Wall clock time and date at job start Fri Apr 10 2020 18:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00070 * 2 1 4 4 H 1.48502 * 109.46947 * 274.98516 * 3 2 1 5 5 H 1.48503 * 109.47332 * 34.98550 * 3 2 1 6 6 H 1.48498 * 109.47305 * 154.98736 * 3 2 1 7 7 C 1.38814 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99242 * 187.05337 * 7 2 1 9 9 N 1.36931 * 120.00284 * 7.05525 * 7 2 1 10 10 C 1.47155 * 125.60235 * 354.75545 * 9 7 2 11 11 C 1.54627 * 107.34639 * 179.06760 * 10 9 7 12 12 C 1.53451 * 102.74060 * 339.34836 * 11 10 9 13 13 C 1.52926 * 112.20518 * 155.00114 * 12 11 10 14 14 C 1.54396 * 104.57216 * 141.97184 * 13 12 11 15 15 N 1.47634 * 107.21660 * 2.21769 * 14 13 12 16 16 C 1.34777 * 126.90474 * 155.14512 * 15 14 13 17 17 O 1.21280 * 120.00167 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.00098 * 0.02562 * 16 15 14 19 19 O 1.42901 * 109.47294 * 180.02562 * 18 16 15 20 20 C 1.42902 * 114.00109 * 180.02562 * 19 18 16 21 21 H 1.09005 * 110.45610 * 330.70309 * 20 19 18 22 22 C 1.54508 * 110.51022 * 208.09375 * 20 19 18 23 23 C 1.54477 * 104.06444 * 241.35309 * 22 20 19 24 24 O 1.44428 * 104.80196 * 23.97910 * 23 22 20 25 25 C 1.44789 * 105.29630 * 319.45562 * 24 23 22 26 26 C 1.48720 * 106.04462 * 335.28448 * 15 14 13 27 27 C 1.47761 * 125.59833 * 174.73421 * 9 7 2 28 28 H 0.96998 * 120.00016 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.86823 * 59.62535 * 10 9 7 30 30 H 1.09003 * 109.98322 * 298.57523 * 10 9 7 31 31 H 1.08999 * 110.75996 * 221.03284 * 11 10 9 32 32 H 1.09007 * 110.91548 * 97.73019 * 11 10 9 33 33 H 1.08998 * 110.41876 * 23.20376 * 13 12 11 34 34 H 1.08997 * 110.52214 * 260.79486 * 13 12 11 35 35 H 1.08998 * 109.91679 * 121.66587 * 14 13 12 36 36 H 1.08994 * 109.92184 * 242.76884 * 14 13 12 37 37 H 1.09005 * 109.47321 * 300.00260 * 18 16 15 38 38 H 1.09003 * 109.47080 * 60.00085 * 18 16 15 39 39 H 1.08991 * 110.51191 * 0.02562 * 22 20 19 40 40 H 1.09000 * 110.50626 * 122.70771 * 22 20 19 41 41 H 1.08994 * 110.37526 * 142.80559 * 23 22 20 42 42 H 1.09002 * 110.37381 * 265.15244 * 23 22 20 43 43 H 1.09001 * 110.42370 * 281.77175 * 25 24 23 44 44 H 1.08998 * 110.48692 * 159.32791 * 25 24 23 45 45 H 1.08998 * 110.53504 * 278.76618 * 26 15 14 46 46 H 1.08990 * 110.87158 * 155.73025 * 26 15 14 47 47 H 1.08995 * 110.39883 * 83.55220 * 27 9 7 48 48 H 1.09003 * 110.39367 * 321.14389 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6200 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0842 -1.2056 0.1154 9 7 1.3333 -2.3836 -0.1446 10 6 -0.1297 -2.5314 -0.2003 11 6 -0.4341 -4.0350 -0.3940 12 6 0.8853 -4.5774 -0.9593 13 6 1.0664 -6.0689 -0.6746 14 6 1.7260 -6.6311 -1.9524 15 7 1.9460 -5.4935 -2.8673 16 6 2.8683 -5.4091 -3.8465 17 8 2.9396 -4.4082 -4.5277 18 6 3.8108 -6.5583 -4.0949 19 8 4.6872 -6.2307 -5.1751 20 6 5.6262 -7.2595 -5.4942 21 1 5.8650 -7.8460 -4.6070 22 6 6.9096 -6.6513 -6.1028 23 6 6.9806 -7.2644 -7.5189 24 8 5.6173 -7.6207 -7.8356 25 6 5.0721 -8.1704 -6.6121 26 6 0.9465 -4.4603 -2.4862 27 6 1.9521 -3.7195 -0.2714 28 1 -0.4850 0.8400 0.0004 29 1 -0.5279 -1.9616 -1.0398 30 1 -0.5753 -2.1800 0.7304 31 1 -1.2467 -4.1760 -1.1066 32 1 -0.6706 -4.5100 0.5583 33 1 0.1000 -6.5438 -0.5052 34 1 1.7182 -6.2172 0.1864 35 1 2.6792 -7.0975 -1.7038 36 1 1.0661 -7.3616 -2.4203 37 1 4.3977 -6.7479 -3.1961 38 1 3.2376 -7.4499 -4.3493 39 1 6.8279 -5.5659 -6.1598 40 1 7.7831 -6.9390 -5.5177 41 1 7.3563 -6.5305 -8.2318 42 1 7.6139 -8.1516 -7.5169 43 1 5.4137 -9.1957 -6.4704 44 1 3.9829 -8.1314 -6.6284 45 1 -0.0238 -4.6854 -2.9288 46 1 1.2825 -3.4668 -2.7831 47 1 2.1881 -4.1238 0.7128 48 1 2.8505 -3.6651 -0.8863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041281037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:43 Heat of formation + Delta-G solvation = -83.362160 kcal Electronic energy + Delta-G solvation = -28372.328983 eV Core-core repulsion = 24428.600968 eV Total energy + Delta-G solvation = -3943.728016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.33390 -39.82720 -38.41846 -36.90993 -35.61540 -32.72402 -31.77610 -30.68537 -29.34717 -29.18433 -28.57167 -27.42663 -25.41168 -24.04320 -23.15967 -22.37161 -21.52237 -20.24554 -19.41061 -18.82076 -17.66086 -17.17984 -16.82893 -16.41329 -16.12058 -15.91327 -15.55174 -14.94852 -14.87742 -14.70197 -14.40499 -13.79035 -13.68138 -13.49427 -13.09219 -12.96513 -12.75076 -12.35389 -12.31373 -12.02074 -11.93134 -11.80368 -11.75852 -11.64357 -11.36357 -11.19936 -11.14140 -10.84850 -10.75553 -10.40410 -10.16715 -9.96395 -9.95340 -9.86665 -9.73572 -9.61870 -9.58156 -8.56460 -8.51876 -6.78958 -5.68428 -3.00125 2.60914 2.71157 3.44890 3.50828 3.51523 3.57737 3.63822 4.15906 4.43319 4.47877 4.54007 4.61214 4.66126 4.74807 4.81755 4.87569 4.94790 5.01429 5.03567 5.08782 5.23293 5.30644 5.36774 5.40051 5.47177 5.51334 5.54866 5.71234 5.76681 5.82268 5.91627 5.98993 6.08348 6.21337 6.30442 6.36642 6.38475 6.52851 6.59464 6.74179 6.82433 6.85679 7.58119 7.63691 7.65287 7.86014 8.28475 8.29382 9.26128 9.86255 10.52071 11.43793 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.002897 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.708785 B = 9661.204258 C =10975.650037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.176 3.824 11 C -0.130 4.130 12 C -0.085 4.085 13 C -0.119 4.119 14 C 0.100 3.900 15 N -0.621 5.621 16 C 0.530 3.470 17 O -0.514 6.514 18 C 0.048 3.952 19 O -0.345 6.345 20 C 0.053 3.947 21 H 0.079 0.921 22 C -0.155 4.155 23 C 0.045 3.955 24 O -0.369 6.369 25 C 0.024 3.976 26 C 0.130 3.870 27 C 0.153 3.847 28 H 0.252 0.748 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.095 0.905 47 H 0.019 0.981 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.912 -22.496 -6.995 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.169 4.169 12 C -0.087 4.087 13 C -0.157 4.157 14 C -0.023 4.023 15 N -0.358 5.358 16 C 0.317 3.683 17 O -0.388 6.388 18 C -0.032 4.032 19 O -0.263 6.263 20 C -0.005 4.005 21 H 0.097 0.903 22 C -0.192 4.192 23 C -0.031 4.031 24 O -0.287 6.287 25 C -0.054 4.054 26 C 0.009 3.991 27 C 0.026 3.974 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.086 0.914 46 H 0.113 0.887 47 H 0.037 0.963 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.876 -21.497 -7.758 24.173 hybrid contribution 0.524 0.501 0.511 0.887 sum 8.400 -20.996 -7.247 23.747 Atomic orbital electron populations 1.69969 1.04878 1.24987 1.56972 1.24794 0.95694 0.97603 1.02182 0.86141 0.78666 0.83674 0.77572 1.21553 1.21815 1.20686 1.19036 0.91074 0.82591 1.42816 0.90590 1.44572 1.01557 1.00849 1.86108 1.21235 0.84427 0.88284 1.00906 1.22691 0.94664 0.99921 0.99593 1.21612 0.98824 0.93752 0.94520 1.22314 1.01199 0.95579 0.96607 1.22215 1.00407 0.89007 0.90684 1.48933 1.34411 1.19239 1.33187 1.19686 0.80388 0.88442 0.79818 1.90779 1.69695 1.31750 1.46560 1.22262 0.92933 0.96581 0.91448 1.88160 1.47211 1.39790 1.51118 1.23595 0.89647 0.89592 0.97706 0.90259 1.23084 0.96056 1.03671 0.96437 1.23427 0.84659 0.99131 0.95928 1.89240 1.25489 1.82052 1.31950 1.24040 1.00596 0.96136 0.84596 1.22296 0.90465 0.93068 0.93316 1.21295 0.93848 0.86407 0.95810 0.93805 0.93393 0.94091 0.91881 0.91926 0.90343 0.90335 0.91285 0.91586 0.90239 0.90510 0.88683 0.89430 0.88670 0.92150 0.91350 0.88463 0.91359 0.88695 0.96334 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.41 10.35 55.49 0.57 -26.84 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 22.82 29.56 -169.99 -5.02 17.80 16 4 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.48 10.27 -15.06 -0.15 -6.64 16 8 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 9 N -0.60 -15.50 3.41 -170.56 -0.58 -16.08 16 10 C 0.18 4.21 5.36 -2.83 -0.02 4.19 16 11 C -0.13 -2.26 5.87 -25.64 -0.15 -2.41 16 12 C -0.09 -1.39 0.69 -154.07 -0.11 -1.49 16 13 C -0.12 -1.35 6.16 -26.04 -0.16 -1.51 16 14 C 0.10 1.01 6.76 -2.69 -0.02 0.99 16 15 N -0.62 -9.04 3.32 -169.94 -0.56 -9.60 16 16 C 0.53 8.55 7.97 -10.99 -0.09 8.46 16 17 O -0.51 -11.08 16.75 -14.35 -0.24 -11.32 16 18 C 0.05 0.53 5.35 36.00 0.19 0.73 16 19 O -0.34 -4.60 9.51 -55.14 -0.52 -5.13 16 20 C 0.05 0.48 3.59 -25.17 -0.09 0.39 16 21 H 0.08 0.50 7.84 -51.93 -0.41 0.09 16 22 C -0.15 -1.29 6.90 -25.16 -0.17 -1.46 16 23 C 0.05 0.37 7.63 37.93 0.29 0.66 16 24 O -0.37 -4.20 11.66 -35.23 -0.41 -4.62 16 25 C 0.02 0.21 7.40 37.93 0.28 0.49 16 26 C 0.13 2.21 5.97 -2.68 -0.02 2.19 16 27 C 0.15 3.13 6.16 -3.25 -0.02 3.11 16 28 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.05 1.28 7.30 -51.93 -0.38 0.90 16 30 H 0.04 1.08 7.60 -51.93 -0.39 0.69 16 31 H 0.06 0.98 7.81 -51.93 -0.41 0.58 16 32 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.08 0.76 7.91 -51.93 -0.41 0.35 16 34 H 0.08 0.85 7.64 -51.93 -0.40 0.45 16 35 H 0.07 0.54 7.55 -51.93 -0.39 0.15 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.97 8.00 -51.93 -0.42 0.56 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 45 H 0.07 1.06 7.86 -51.93 -0.41 0.65 16 46 H 0.09 2.05 7.78 -51.93 -0.40 1.65 16 47 H 0.02 0.38 7.79 -51.93 -0.40 -0.03 16 48 H 0.04 0.81 8.01 -51.93 -0.42 0.39 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -36.40 379.54 -9.54 -45.94 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -8.16 Total: -3.28 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -0.33 Total: 7.41 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.57 Total: -52.52 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -1.18 Total: -21.06 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.40 -9.54 -45.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041281037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.425 kcal (2) G-P(sol) polarization free energy of solvation -36.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds