Wall clock time and date at job start Fri Apr 10 2020 18:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00313 * 2 1 4 4 H 1.48497 * 109.47437 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46979 * 300.00474 * 3 2 1 6 6 H 1.48502 * 109.46958 * 60.00068 * 3 2 1 7 7 C 1.38816 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99526 * 179.97438 * 7 2 1 9 9 N 1.36925 * 120.00387 * 359.97438 * 7 2 1 10 10 C 1.47154 * 125.60022 * 0.02720 * 9 7 2 11 11 C 1.54634 * 107.34670 * 179.06344 * 10 9 7 12 12 C 1.53475 * 102.74143 * 339.33654 * 11 10 9 13 13 C 1.53489 * 111.81787 * 272.84220 * 12 11 10 14 14 C 1.55444 * 101.29825 * 204.13008 * 13 12 11 15 15 N 1.47585 * 104.90885 * 35.63078 * 14 13 12 16 16 C 1.34779 * 125.67440 * 156.08756 * 15 14 13 17 17 O 1.21285 * 119.99744 * 179.69119 * 16 15 14 18 18 C 1.50696 * 119.99937 * 359.70402 * 16 15 14 19 19 O 1.42901 * 109.47052 * 179.97438 * 18 16 15 20 20 C 1.42897 * 114.00026 * 179.97438 * 19 18 16 21 21 H 1.08999 * 110.83231 * 333.64818 * 20 19 18 22 22 C 1.54813 * 110.90879 * 209.99747 * 20 19 18 23 23 C 1.54098 * 104.30472 * 220.99045 * 22 20 19 24 24 O 1.43744 * 107.29564 * 357.90152 * 23 22 20 25 25 C 1.44373 * 106.97248 * 26.51652 * 24 23 22 26 26 C 1.47452 * 108.64682 * 335.83389 * 15 14 13 27 27 C 1.47758 * 125.60315 * 179.97438 * 9 7 2 28 28 H 0.96996 * 119.99760 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.87256 * 59.62265 * 10 9 7 30 30 H 1.09003 * 109.98801 * 298.56320 * 10 9 7 31 31 H 1.08997 * 110.75852 * 221.02920 * 11 10 9 32 32 H 1.08997 * 110.91473 * 97.71944 * 11 10 9 33 33 H 1.08998 * 111.04277 * 322.33466 * 13 12 11 34 34 H 1.09004 * 111.04500 * 86.27833 * 13 12 11 35 35 H 1.09005 * 110.47120 * 276.74518 * 14 13 12 36 36 H 1.09002 * 110.30871 * 154.44023 * 14 13 12 37 37 H 1.08994 * 109.47566 * 59.99136 * 18 16 15 38 38 H 1.09004 * 109.46947 * 299.99065 * 18 16 15 39 39 H 1.09002 * 110.48794 * 102.24589 * 22 20 19 40 40 H 1.09002 * 110.48657 * 339.73012 * 22 20 19 41 41 H 1.08999 * 109.88182 * 117.33024 * 23 22 20 42 42 H 1.09008 * 109.87958 * 238.32904 * 23 22 20 43 43 H 1.09002 * 110.62093 * 78.43762 * 25 24 23 44 44 H 1.09000 * 110.61898 * 201.27906 * 25 24 23 45 45 H 1.08994 * 109.99755 * 121.79786 * 26 15 14 46 46 H 1.09003 * 109.98877 * 243.08611 * 26 15 14 47 47 H 1.09001 * 110.39437 * 83.56390 * 27 9 7 48 48 H 1.09000 * 110.39671 * 321.17066 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1389 -2.5316 -0.0006 11 6 -0.4538 -4.0454 -0.0247 12 6 0.8478 -4.6533 -0.5649 13 6 0.8661 -4.6907 -2.0992 14 6 1.8739 -5.8443 -2.3637 15 7 1.6311 -6.8165 -1.2801 16 6 1.9155 -8.1331 -1.3271 17 8 1.6768 -8.8395 -0.3705 18 6 2.5302 -8.7273 -2.5680 19 8 2.7360 -10.1280 -2.3737 20 6 3.3176 -10.7915 -3.4978 21 1 3.0839 -10.2642 -4.4227 22 6 2.8527 -12.2664 -3.5702 23 6 4.1217 -13.0467 -3.9643 24 8 5.1753 -12.0858 -4.1454 25 6 4.8520 -10.9455 -3.3209 26 6 1.0314 -6.1065 -0.1354 27 6 1.9359 -3.7337 -0.0016 28 1 -0.4849 0.8400 0.0004 29 1 -0.5582 -2.0519 -0.8849 30 1 -0.5576 -2.0805 0.8991 31 1 -1.2862 -4.2562 -0.6959 32 1 -0.6653 -4.4148 0.9787 33 1 -0.1204 -4.9294 -2.4967 34 1 1.2343 -3.7503 -2.5094 35 1 2.8980 -5.4739 -2.3176 36 1 1.6791 -6.3019 -3.3337 37 1 3.4867 -8.2440 -2.7669 38 1 1.8617 -8.5721 -3.4148 39 1 2.0800 -12.3860 -4.3296 40 1 2.4865 -12.5991 -2.5989 41 1 4.3890 -13.7447 -3.1709 42 1 3.9491 -13.5903 -4.8932 43 1 5.0984 -11.1439 -2.2778 44 1 5.3732 -10.0560 -3.6747 45 1 0.0655 -6.5469 0.1119 46 1 1.6967 -6.1600 0.7263 47 1 2.1979 -4.0328 1.0133 48 1 2.8171 -3.7506 -0.6429 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041281038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:45 Heat of formation + Delta-G solvation = -87.073010 kcal Electronic energy + Delta-G solvation = -27908.687053 eV Core-core repulsion = 23964.798122 eV Total energy + Delta-G solvation = -3943.888930 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.45896 -39.92000 -38.61096 -37.17096 -35.68591 -32.80569 -31.88730 -30.55736 -29.57951 -29.35377 -28.71409 -27.48805 -25.43503 -23.62419 -23.11907 -22.82791 -21.74842 -20.28621 -19.55156 -18.87994 -17.76912 -17.29229 -16.84998 -16.54287 -16.34437 -15.96390 -15.43717 -15.06628 -15.00130 -14.73421 -14.29229 -13.99887 -13.84875 -13.62359 -13.30996 -13.01263 -12.69088 -12.54411 -12.49190 -12.39148 -12.04924 -11.98409 -11.83721 -11.58589 -11.32231 -11.22143 -11.16967 -10.91176 -10.81813 -10.30250 -10.21577 -10.06226 -9.99334 -9.89202 -9.85512 -9.76747 -9.67404 -8.65334 -8.63100 -6.86900 -5.74836 -3.08282 2.45735 2.53073 3.32996 3.36902 3.42845 3.45075 3.74137 4.04355 4.27786 4.37901 4.45475 4.46986 4.66563 4.70071 4.76182 4.82780 4.84539 4.90334 4.98843 5.22834 5.26794 5.27587 5.34082 5.39157 5.43646 5.47702 5.49097 5.51665 5.72816 5.78457 5.90543 5.97117 6.09238 6.20270 6.23565 6.30898 6.32914 6.47253 6.57151 6.64860 6.72139 6.77854 7.45951 7.52877 7.58930 7.79641 8.09878 8.21612 9.18483 9.78419 10.44373 11.36763 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.028429 B = 0.002198 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.664932 B =12735.413990 C =13289.569903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.131 4.131 12 C -0.084 4.084 13 C -0.109 4.109 14 C 0.095 3.905 15 N -0.615 5.615 16 C 0.527 3.473 17 O -0.525 6.525 18 C 0.047 3.953 19 O -0.346 6.346 20 C 0.054 3.946 21 H 0.083 0.917 22 C -0.157 4.157 23 C 0.048 3.952 24 O -0.374 6.374 25 C 0.026 3.974 26 C 0.127 3.873 27 C 0.150 3.850 28 H 0.251 0.749 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.021 0.979 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.009 -20.682 -10.153 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.169 4.169 12 C -0.086 4.086 13 C -0.147 4.147 14 C -0.027 4.027 15 N -0.351 5.351 16 C 0.314 3.686 17 O -0.401 6.401 18 C -0.033 4.033 19 O -0.264 6.264 20 C -0.005 4.005 21 H 0.101 0.899 22 C -0.194 4.194 23 C -0.029 4.029 24 O -0.293 6.293 25 C -0.051 4.051 26 C 0.005 3.995 27 C 0.024 3.976 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.038 0.962 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.993 -21.055 -9.595 23.480 hybrid contribution 0.282 1.166 -0.099 1.204 sum 4.275 -19.889 -9.694 22.535 Atomic orbital electron populations 1.69972 1.04852 1.24911 1.57172 1.24800 0.95722 0.97655 1.02324 0.86056 0.78711 0.83824 0.77235 1.20537 1.21792 1.21788 1.19085 0.90429 0.82363 1.43629 0.90446 1.44572 1.01598 0.99691 1.87229 1.21199 0.84250 0.87888 1.01147 1.22712 0.94769 0.99613 0.99835 1.21580 0.99044 0.92525 0.95439 1.22569 0.98679 0.98159 0.95326 1.22617 1.00392 0.89951 0.89781 1.48637 1.62087 1.06557 1.17839 1.19736 0.79184 0.80731 0.88899 1.90734 1.52634 1.59247 1.37446 1.22293 1.01007 0.83318 0.96638 1.88054 1.82084 1.18965 1.37325 1.23780 0.93003 0.93949 0.89750 0.89908 1.22995 0.98715 0.93528 1.04187 1.23140 0.85907 0.92010 1.01793 1.88898 1.45178 1.28490 1.66734 1.24079 0.94705 0.89852 0.96511 1.21816 0.98264 0.90944 0.88450 1.21323 0.93494 0.85866 0.96882 0.93809 0.93493 0.93936 0.91843 0.92122 0.90813 0.88624 0.90815 0.90994 0.90060 0.90053 0.89661 0.88958 0.91873 0.89448 0.90827 0.88510 0.91202 0.91112 0.96166 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 10.30 55.49 0.57 -25.78 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.09 10.28 -15.06 -0.15 -6.24 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.60 -14.61 3.41 -170.56 -0.58 -15.19 16 10 C 0.18 4.14 5.35 -2.83 -0.02 4.12 16 11 C -0.13 -2.27 5.85 -25.63 -0.15 -2.42 16 12 C -0.08 -1.34 0.61 -154.09 -0.09 -1.43 16 13 C -0.11 -1.48 5.99 -25.18 -0.15 -1.63 16 14 C 0.10 1.04 6.63 -2.15 -0.01 1.02 16 15 N -0.62 -8.11 3.34 -170.73 -0.57 -8.68 16 16 C 0.53 7.36 7.93 -10.99 -0.09 7.27 16 17 O -0.52 -9.59 16.83 -14.36 -0.24 -9.83 16 18 C 0.05 0.46 5.26 36.00 0.19 0.65 16 19 O -0.35 -3.93 9.64 -55.14 -0.53 -4.46 16 20 C 0.05 0.44 3.64 -24.60 -0.09 0.35 16 21 H 0.08 0.54 7.83 -51.93 -0.41 0.13 16 22 C -0.16 -1.12 6.78 -25.20 -0.17 -1.29 16 23 C 0.05 0.34 7.70 37.73 0.29 0.63 16 24 O -0.37 -3.55 11.52 -35.23 -0.41 -3.95 16 25 C 0.03 0.21 7.46 38.34 0.29 0.50 16 26 C 0.13 1.87 6.14 -3.70 -0.02 1.85 16 27 C 0.15 2.91 6.10 -3.25 -0.02 2.89 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.05 1.19 7.39 -51.93 -0.38 0.81 16 30 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 31 H 0.06 0.99 7.80 -51.93 -0.40 0.59 16 32 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 33 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 34 H 0.10 1.47 8.00 -51.93 -0.42 1.05 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.58 7.49 -51.93 -0.39 0.19 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.61 7.83 -51.93 -0.41 0.20 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.73 8.08 -51.93 -0.42 0.32 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 46 H 0.07 1.10 7.62 -51.93 -0.40 0.70 16 47 H 0.02 0.41 7.79 -51.93 -0.40 0.00 16 48 H 0.04 0.74 7.95 -51.93 -0.41 0.32 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -33.14 379.32 -9.53 -42.67 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -8.17 Total: -3.02 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.30 Total: 5.94 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.58 Total: -49.66 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.18 Total: -18.24 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.14 -9.53 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041281038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.402 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds