Wall clock time and date at job start Fri Apr 10 2020 18:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00313 * 2 1 4 4 H 1.48497 * 109.47437 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46979 * 300.00474 * 3 2 1 6 6 H 1.48502 * 109.46958 * 60.00068 * 3 2 1 7 7 C 1.38816 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99526 * 179.97438 * 7 2 1 9 9 N 1.36925 * 120.00387 * 359.97438 * 7 2 1 10 10 C 1.47154 * 125.60022 * 0.02720 * 9 7 2 11 11 C 1.54634 * 107.34670 * 179.06344 * 10 9 7 12 12 C 1.53475 * 102.74143 * 339.33654 * 11 10 9 13 13 C 1.53489 * 111.81787 * 272.84220 * 12 11 10 14 14 C 1.55444 * 101.29825 * 204.13008 * 13 12 11 15 15 N 1.47585 * 104.90885 * 35.63078 * 14 13 12 16 16 C 1.34779 * 125.67440 * 156.08756 * 15 14 13 17 17 O 1.21285 * 119.99744 * 179.69119 * 16 15 14 18 18 C 1.50696 * 119.99937 * 359.70402 * 16 15 14 19 19 O 1.42901 * 109.47052 * 179.97438 * 18 16 15 20 20 C 1.42897 * 114.00026 * 179.97438 * 19 18 16 21 21 H 1.08999 * 110.83231 * 333.64818 * 20 19 18 22 22 C 1.54813 * 110.90879 * 209.99747 * 20 19 18 23 23 C 1.54098 * 104.30472 * 220.99045 * 22 20 19 24 24 O 1.43744 * 107.29564 * 357.90152 * 23 22 20 25 25 C 1.44373 * 106.97248 * 26.51652 * 24 23 22 26 26 C 1.47452 * 108.64682 * 335.83389 * 15 14 13 27 27 C 1.47758 * 125.60315 * 179.97438 * 9 7 2 28 28 H 0.96996 * 119.99760 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.87256 * 59.62265 * 10 9 7 30 30 H 1.09003 * 109.98801 * 298.56320 * 10 9 7 31 31 H 1.08997 * 110.75852 * 221.02920 * 11 10 9 32 32 H 1.08997 * 110.91473 * 97.71944 * 11 10 9 33 33 H 1.08998 * 111.04277 * 322.33466 * 13 12 11 34 34 H 1.09004 * 111.04500 * 86.27833 * 13 12 11 35 35 H 1.09005 * 110.47120 * 276.74518 * 14 13 12 36 36 H 1.09002 * 110.30871 * 154.44023 * 14 13 12 37 37 H 1.08994 * 109.47566 * 59.99136 * 18 16 15 38 38 H 1.09004 * 109.46947 * 299.99065 * 18 16 15 39 39 H 1.09002 * 110.48794 * 102.24589 * 22 20 19 40 40 H 1.09002 * 110.48657 * 339.73012 * 22 20 19 41 41 H 1.08999 * 109.88182 * 117.33024 * 23 22 20 42 42 H 1.09008 * 109.87958 * 238.32904 * 23 22 20 43 43 H 1.09002 * 110.62093 * 78.43762 * 25 24 23 44 44 H 1.09000 * 110.61898 * 201.27906 * 25 24 23 45 45 H 1.08994 * 109.99755 * 121.79786 * 26 15 14 46 46 H 1.09003 * 109.98877 * 243.08611 * 26 15 14 47 47 H 1.09001 * 110.39437 * 83.56390 * 27 9 7 48 48 H 1.09000 * 110.39671 * 321.17066 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1389 -2.5316 -0.0006 11 6 -0.4538 -4.0454 -0.0247 12 6 0.8478 -4.6533 -0.5649 13 6 0.8661 -4.6907 -2.0992 14 6 1.8739 -5.8443 -2.3637 15 7 1.6311 -6.8165 -1.2801 16 6 1.9155 -8.1331 -1.3271 17 8 1.6768 -8.8395 -0.3705 18 6 2.5302 -8.7273 -2.5680 19 8 2.7360 -10.1280 -2.3737 20 6 3.3176 -10.7915 -3.4978 21 1 3.0839 -10.2642 -4.4227 22 6 2.8527 -12.2664 -3.5702 23 6 4.1217 -13.0467 -3.9643 24 8 5.1753 -12.0858 -4.1454 25 6 4.8520 -10.9455 -3.3209 26 6 1.0314 -6.1065 -0.1354 27 6 1.9359 -3.7337 -0.0016 28 1 -0.4849 0.8400 0.0004 29 1 -0.5582 -2.0519 -0.8849 30 1 -0.5576 -2.0805 0.8991 31 1 -1.2862 -4.2562 -0.6959 32 1 -0.6653 -4.4148 0.9787 33 1 -0.1204 -4.9294 -2.4967 34 1 1.2343 -3.7503 -2.5094 35 1 2.8980 -5.4739 -2.3176 36 1 1.6791 -6.3019 -3.3337 37 1 3.4867 -8.2440 -2.7669 38 1 1.8617 -8.5721 -3.4148 39 1 2.0800 -12.3860 -4.3296 40 1 2.4865 -12.5991 -2.5989 41 1 4.3890 -13.7447 -3.1709 42 1 3.9491 -13.5903 -4.8932 43 1 5.0984 -11.1439 -2.2778 44 1 5.3732 -10.0560 -3.6747 45 1 0.0655 -6.5469 0.1119 46 1 1.6967 -6.1600 0.7263 47 1 2.1979 -4.0328 1.0133 48 1 2.8171 -3.7506 -0.6429 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041281038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:45 Heat of formation + Delta-G solvation = -108.832641 kcal Electronic energy + Delta-G solvation = -27909.630621 eV Core-core repulsion = 23964.798122 eV Total energy + Delta-G solvation = -3944.832499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55449 -40.64079 -39.78075 -38.00050 -37.12085 -34.53101 -32.57305 -32.06530 -30.84074 -30.33430 -29.73501 -28.59590 -27.12774 -25.01795 -24.01211 -23.70996 -22.32737 -22.09837 -20.54586 -20.20282 -18.84546 -18.48471 -17.95191 -17.41777 -17.24648 -16.82954 -16.70917 -16.18007 -16.03495 -15.87015 -15.64440 -15.54421 -14.90968 -14.56910 -14.23080 -14.12491 -13.87068 -13.83385 -13.78461 -13.37090 -13.25031 -13.03926 -12.93439 -12.81830 -12.59227 -12.57685 -12.41999 -12.38673 -11.97454 -11.78281 -11.72488 -11.52794 -11.42450 -11.27495 -10.90246 -10.89370 -10.68456 -10.53088 -9.72365 -8.87183 -7.82948 -5.17748 1.47318 1.48107 1.51770 1.57827 1.58602 2.50602 2.60462 3.12894 3.32441 3.38989 3.50492 3.57446 3.61621 3.71541 3.79484 3.91636 3.95324 4.12614 4.19880 4.23771 4.24278 4.28214 4.32033 4.37484 4.61534 4.65111 4.66909 4.72517 4.73829 4.78192 4.81875 4.87435 4.92530 4.97208 5.01242 5.05598 5.06581 5.23021 5.30146 5.38777 5.48403 5.69721 5.72052 5.81123 6.07106 6.21635 6.46694 7.07517 7.12796 7.79549 8.44168 9.27419 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.028429 B = 0.002198 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.664932 B =12735.413990 C =13289.569903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.297 1.297 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.623 5.623 10 C 0.189 3.811 11 C -0.118 4.118 12 C -0.072 4.072 13 C -0.107 4.107 14 C 0.101 3.899 15 N -0.613 5.613 16 C 0.523 3.477 17 O -0.578 6.578 18 C 0.051 3.949 19 O -0.377 6.377 20 C 0.053 3.947 21 H 0.108 0.892 22 C -0.156 4.156 23 C 0.044 3.956 24 O -0.393 6.393 25 C 0.023 3.977 26 C 0.133 3.867 27 C 0.148 3.852 28 H 0.245 0.755 29 H 0.017 0.983 30 H 0.000 1.000 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.058 0.942 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.014 0.986 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.928 -21.967 -12.551 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.224 1.224 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.350 5.350 10 C 0.064 3.936 11 C -0.156 4.156 12 C -0.074 4.074 13 C -0.145 4.145 14 C -0.020 4.020 15 N -0.348 5.348 16 C 0.312 3.688 17 O -0.458 6.458 18 C -0.028 4.028 19 O -0.295 6.295 20 C -0.005 4.005 21 H 0.126 0.874 22 C -0.194 4.194 23 C -0.032 4.032 24 O -0.312 6.312 25 C -0.054 4.054 26 C 0.010 3.990 27 C 0.023 3.977 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.019 0.981 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.076 0.924 44 H 0.130 0.870 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.032 0.968 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.943 -22.357 -12.019 25.860 hybrid contribution 0.019 1.540 0.698 1.691 sum 4.963 -20.818 -11.321 24.211 Atomic orbital electron populations 1.70188 1.06209 1.25063 1.58564 1.25609 0.96580 1.00875 1.02930 0.85047 0.78244 0.79711 0.76561 1.18992 1.21834 1.22431 1.19459 0.90949 0.83641 1.42412 0.90007 1.44846 1.02326 1.00862 1.86921 1.20927 0.83680 0.91299 0.97687 1.22577 0.96523 0.95404 1.01133 1.21396 0.96306 0.92367 0.97316 1.22539 1.00433 0.98617 0.92945 1.22742 0.99926 0.88566 0.90811 1.48670 1.61529 1.06841 1.17724 1.20558 0.78264 0.80319 0.89653 1.90712 1.54933 1.60443 1.39692 1.22409 1.02701 0.82793 0.94910 1.88028 1.82524 1.19832 1.39134 1.23940 0.92462 0.94348 0.89776 0.87406 1.23022 0.99185 0.93130 1.04036 1.23288 0.85329 0.91732 1.02835 1.88875 1.46268 1.29193 1.66906 1.24129 0.95366 0.90176 0.95715 1.21575 0.98334 0.90119 0.88971 1.21466 0.94878 0.84385 0.96959 0.94514 0.96458 0.98137 0.89503 0.91531 0.89295 0.90438 0.89955 0.86759 0.87324 0.86681 0.87818 0.90393 0.91920 0.87574 0.92360 0.86989 0.91082 0.92292 0.96805 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.24 10.30 21.65 0.22 -56.02 16 2 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 3 Si 0.98 45.00 29.55 68.60 2.03 47.03 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.24 -12.79 10.28 84.04 0.86 -11.93 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.62 -30.62 3.41 -693.53 -2.36 -32.98 16 10 C 0.19 8.98 5.35 86.81 0.46 9.44 16 11 C -0.12 -4.04 5.85 31.31 0.18 -3.86 16 12 C -0.07 -2.19 0.61 -51.91 -0.03 -2.23 16 13 C -0.11 -2.62 5.99 31.60 0.19 -2.43 16 14 C 0.10 1.78 6.63 87.01 0.58 2.36 16 15 N -0.61 -14.39 3.34 -812.46 -2.72 -17.11 16 16 C 0.52 13.32 7.93 87.66 0.70 14.01 16 17 O -0.58 -20.73 16.83 15.99 0.27 -20.46 16 18 C 0.05 0.80 5.26 71.23 0.37 1.18 16 19 O -0.38 -7.65 9.64 -129.94 -1.25 -8.90 16 20 C 0.05 0.72 3.64 31.98 0.12 0.84 16 21 H 0.11 0.92 7.83 -2.39 -0.02 0.90 16 22 C -0.16 -1.92 6.78 31.58 0.21 -1.70 16 23 C 0.04 0.54 7.70 72.35 0.56 1.10 16 24 O -0.39 -6.77 11.52 -148.98 -1.72 -8.49 16 25 C 0.02 0.34 7.46 72.75 0.54 0.89 16 26 C 0.13 3.70 6.14 86.08 0.53 4.23 16 27 C 0.15 5.66 6.10 86.20 0.53 6.19 16 28 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.02 0.91 7.39 -2.39 -0.02 0.89 16 30 H 0.00 0.02 7.49 -2.39 -0.02 0.00 16 31 H 0.09 2.58 7.80 -2.39 -0.02 2.56 16 32 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 33 H 0.09 1.93 7.85 -2.39 -0.02 1.91 16 34 H 0.08 2.23 8.00 -2.38 -0.02 2.21 16 35 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.11 1.15 7.49 -2.39 -0.02 1.13 16 37 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.12 1.06 7.83 -2.39 -0.02 1.04 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 1.99 7.88 -2.39 -0.02 1.97 16 46 H 0.06 1.79 7.62 -2.39 -0.02 1.77 16 47 H 0.01 0.56 7.79 -2.39 -0.02 0.54 16 48 H 0.05 1.79 7.95 -2.39 -0.02 1.77 16 Total: -1.00 -75.60 379.32 1.67 -73.93 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.93 Total: 8.20 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.26 Total: 14.81 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.86 Total: -106.11 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -2.70 Total: -37.85 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -75.60 1.67 -73.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041281038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.902 kcal (2) G-P(sol) polarization free energy of solvation -75.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds