Wall clock time and date at job start Fri Apr 10 2020 18:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47051 * 2 1 4 4 C 1.36008 * 117.00215 * 180.02562 * 3 2 1 5 5 C 1.39681 * 125.67450 * 180.02562 * 4 3 2 6 6 C 1.37980 * 107.64253 * 180.02562 * 5 4 3 7 7 C 1.47167 * 126.43946 * 180.02562 * 6 5 4 8 8 O 1.21626 * 120.00039 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00162 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99857 * 180.02562 * 9 7 6 11 11 H 1.08995 * 110.88828 * 31.11618 * 10 9 7 12 12 C 1.54909 * 111.00257 * 267.19116 * 10 9 7 13 13 N 1.47424 * 104.83164 * 204.91928 * 12 10 9 14 14 C 1.36937 * 125.64741 * 204.17622 * 13 12 10 15 15 H 1.08007 * 120.00221 * 359.97237 * 14 13 12 16 16 C 1.38819 * 120.00280 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99457 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00291 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47063 * 59.99867 * 18 16 14 20 20 H 1.48497 * 109.47335 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47084 * 300.00029 * 18 16 14 22 22 C 1.47013 * 108.70549 * 24.12977 * 13 12 10 23 23 C 1.54325 * 107.27315 * 358.94229 * 22 13 12 24 24 H 1.08998 * 110.72209 * 96.16840 * 23 22 13 25 25 O 1.42903 * 110.72418 * 219.44644 * 23 22 13 26 26 C 1.42893 * 113.99670 * 263.52329 * 25 23 22 27 27 N 1.36677 * 107.12618 * 359.97438 * 6 5 4 28 28 H 0.97001 * 126.09489 * 179.97438 * 27 6 5 29 29 N 1.31223 * 125.66576 * 0.34707 * 4 3 2 30 30 H 1.08997 * 109.47327 * 60.00227 * 1 2 3 31 31 H 1.09008 * 109.47091 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47053 * 300.00100 * 1 2 3 33 33 H 1.09001 * 109.47438 * 239.99655 * 2 1 3 34 34 H 1.09005 * 109.47170 * 119.99497 * 2 1 3 35 35 H 1.08003 * 126.18165 * 0.03193 * 5 4 3 36 36 H 0.97001 * 119.99943 * 359.97438 * 9 7 6 37 37 H 1.09003 * 110.37015 * 323.75760 * 12 10 9 38 38 H 1.08998 * 110.36576 * 86.08183 * 12 10 9 39 39 H 0.97000 * 119.99717 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.88435 * 239.52482 * 22 13 12 41 41 H 1.09000 * 109.88660 * 118.35578 * 22 13 12 42 42 H 1.09009 * 109.47071 * 299.99279 * 26 25 23 43 43 H 1.08997 * 109.47701 * 59.99273 * 26 25 23 44 44 H 1.09006 * 109.47209 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.0135 2.7572 -0.0001 6 6 5.3701 2.5057 -0.0015 7 6 6.4454 3.5105 -0.0011 8 8 6.1706 4.6953 0.0001 9 7 7.7348 3.1179 -0.0021 10 6 8.8051 4.1181 -0.0011 11 1 8.4939 5.0197 0.5264 12 6 9.2586 4.4474 -1.4453 13 7 10.6448 4.9292 -1.3049 14 6 11.2967 5.7518 -2.1845 15 1 10.7910 6.1026 -3.0720 16 6 12.6075 6.1348 -1.9354 17 7 13.2236 5.7077 -0.8536 18 14 13.4970 7.2563 -3.1355 19 1 12.7629 8.5422 -3.2484 20 1 14.8742 7.5147 -2.6439 21 1 13.5609 6.6041 -4.4681 22 6 11.2110 4.3813 -0.0638 23 6 10.1080 3.5379 0.6098 24 1 10.2179 2.4841 0.3540 25 8 10.1266 3.7201 2.0270 26 6 10.8498 2.7102 2.7334 27 7 5.5278 1.1481 -0.0022 28 1 6.3724 0.6709 -0.0035 29 7 4.2529 0.5689 -0.0075 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.5455 3.7306 0.0012 36 1 7.9540 2.1729 -0.0027 37 1 9.2293 3.5516 -2.0657 38 1 8.6276 5.2266 -1.8727 39 1 14.1394 5.9756 -0.6794 40 1 11.5116 5.1943 0.5971 41 1 12.0701 3.7514 -0.2946 42 1 10.3977 1.7373 2.5402 43 1 11.8863 2.7025 2.3964 44 1 10.8172 2.9204 3.8025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081839413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:11 Heat of formation + Delta-G solvation = -31.893354 kcal Electronic energy + Delta-G solvation = -27282.539660 eV Core-core repulsion = 23237.503156 eV Total energy + Delta-G solvation = -4045.036504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.58140 -40.99687 -39.71581 -39.16351 -37.52139 -35.82782 -33.85595 -32.98634 -31.77759 -31.16654 -30.48275 -28.91079 -27.52285 -26.33953 -25.14348 -23.91395 -22.41765 -22.27363 -21.94044 -21.38609 -20.17572 -18.99539 -18.15725 -17.93285 -17.41637 -17.31033 -16.83998 -16.64263 -16.35133 -15.88157 -15.82183 -15.44425 -15.23181 -15.07418 -14.91733 -14.68120 -14.48823 -14.09260 -13.61017 -13.57509 -13.41131 -13.23701 -13.00875 -12.73635 -12.65919 -12.58508 -12.33591 -12.12895 -12.03220 -11.85951 -11.82901 -11.66326 -11.40916 -10.76670 -10.69648 -10.38300 -10.16774 -9.80184 -8.96515 -7.87103 -5.24900 -0.13478 1.31505 1.35535 1.46566 1.50164 1.54916 1.58031 2.00980 2.25845 2.47224 2.75417 3.32369 3.42772 3.48152 3.52108 3.82165 3.89403 4.06093 4.07540 4.13514 4.21882 4.36773 4.39416 4.41009 4.42069 4.57985 4.65219 4.81091 4.83034 4.87824 4.89162 4.96346 5.02140 5.22318 5.25339 5.36151 5.42273 5.67014 5.76139 6.14079 6.19190 6.26572 6.31208 6.41497 6.87916 7.05450 7.70433 8.31925 9.22025 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.021738 B = 0.002471 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.733826 B =11327.457369 C =12189.360187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.299 6.299 4 C 0.255 3.745 5 C -0.205 4.205 6 C 0.069 3.931 7 C 0.591 3.409 8 O -0.548 6.548 9 N -0.689 5.689 10 C 0.150 3.850 11 H 0.085 0.915 12 C 0.129 3.871 13 N -0.621 5.621 14 C -0.246 4.246 15 H 0.084 0.916 16 C -0.062 4.062 17 N -0.948 5.948 18 Si 0.980 3.020 19 H -0.280 1.280 20 H -0.293 1.293 21 H -0.274 1.274 22 C 0.174 3.826 23 C 0.076 3.924 24 H 0.102 0.898 25 O -0.396 6.396 26 C 0.025 3.975 27 N -0.429 5.429 28 H 0.460 0.540 29 N -0.317 5.317 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.167 0.833 36 H 0.415 0.585 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.249 0.751 40 H 0.018 0.982 41 H 0.024 0.976 42 H 0.066 0.934 43 H 0.036 0.964 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.455 -16.721 4.659 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.204 6.204 4 C 0.052 3.948 5 C -0.237 4.237 6 C -0.062 4.062 7 C 0.376 3.624 8 O -0.423 6.423 9 N -0.341 5.341 10 C 0.044 3.956 11 H 0.103 0.897 12 C 0.003 3.997 13 N -0.349 5.349 14 C -0.374 4.374 15 H 0.102 0.898 16 C -0.256 4.256 17 N -0.597 5.597 18 Si 0.808 3.192 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.200 1.200 22 C 0.048 3.952 23 C 0.016 3.984 24 H 0.119 0.881 25 O -0.315 6.315 26 C -0.070 4.070 27 N -0.149 5.149 28 H 0.310 0.690 29 N -0.161 5.161 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.184 0.816 36 H 0.252 0.748 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.672 -16.646 4.740 25.460 hybrid contribution 1.523 0.706 -0.579 1.776 sum -17.149 -15.940 4.161 23.780 Atomic orbital electron populations 1.21826 0.90815 1.04392 1.03489 1.22995 0.96945 0.79847 1.02487 1.86330 1.13173 1.31625 1.89281 1.20277 0.85000 0.91742 0.97786 1.21219 0.90136 0.98791 1.13521 1.20848 0.94486 0.84689 1.06190 1.17152 0.81860 0.86985 0.76443 1.90887 1.83204 1.17930 1.50256 1.45475 1.04149 1.10565 1.73898 1.21975 0.85386 0.91969 0.96315 0.89690 1.21957 0.85616 0.97895 0.94259 1.44496 1.09966 1.56539 1.23901 1.19402 0.95081 1.21378 1.01579 0.89834 1.25661 0.97854 1.02305 0.99759 1.70140 1.12173 1.49520 1.27826 0.85132 0.77110 0.78691 0.78269 1.20605 1.21949 1.19983 1.21302 0.92521 0.94654 0.86717 1.23525 0.93821 0.99679 0.81344 0.88066 1.87908 1.74581 1.51531 1.17476 1.23000 0.95405 0.91077 0.97557 1.46061 1.07332 1.02629 1.58887 0.69023 1.77295 0.88446 1.20089 1.30241 0.91565 0.88000 0.91515 0.91504 0.91431 0.81577 0.74782 0.93543 0.94150 0.94225 0.96399 0.95825 0.91517 0.94571 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.05 0.75 6.33 71.98 0.46 1.21 16 3 O -0.30 -6.30 10.22 -93.64 -0.96 -7.26 16 4 C 0.25 5.83 7.85 85.13 0.67 6.50 16 5 C -0.21 -4.96 10.63 22.56 0.24 -4.72 16 6 C 0.07 1.57 7.12 40.67 0.29 1.86 16 7 C 0.59 16.30 7.80 86.59 0.68 16.97 16 8 O -0.55 -20.04 16.54 -4.11 -0.07 -20.11 16 9 N -0.69 -16.81 5.19 -439.46 -2.28 -19.09 16 10 C 0.15 5.13 3.15 46.39 0.15 5.28 16 11 H 0.08 3.47 7.54 -2.39 -0.02 3.45 16 12 C 0.13 5.19 6.93 86.86 0.60 5.79 16 13 N -0.62 -31.46 3.39 -691.99 -2.35 -33.80 16 14 C -0.25 -13.70 10.28 84.04 0.86 -12.84 16 15 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 16 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 17 N -0.95 -56.20 10.31 21.65 0.22 -55.98 16 18 Si 0.98 45.55 29.55 68.60 2.03 47.58 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 C 0.17 8.32 5.15 86.73 0.45 8.77 16 23 C 0.08 2.59 3.09 31.79 0.10 2.69 16 24 H 0.10 2.71 7.69 -2.39 -0.02 2.69 16 25 O -0.40 -13.34 10.43 -148.98 -1.55 -14.90 16 26 C 0.03 0.62 10.85 113.37 1.23 1.84 16 27 N -0.43 -7.40 7.33 -48.20 -0.35 -7.75 16 28 H 0.46 4.48 8.23 -213.36 -1.76 2.72 16 29 N -0.32 -6.63 12.05 -170.75 -2.06 -8.69 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.17 3.96 8.06 -2.91 -0.02 3.93 16 36 H 0.41 6.51 7.74 -92.71 -0.72 5.79 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 40 H 0.02 1.00 7.29 -2.39 -0.02 0.99 16 41 H 0.02 1.23 7.51 -2.39 -0.02 1.21 16 42 H 0.07 1.18 8.12 -2.38 -0.02 1.16 16 43 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -75.10 372.87 -1.89 -76.99 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -1.44 Total: 13.38 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: 6.92 Total: 29.63 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -6.82 Total: -125.31 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -2.58 Total: -42.27 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.10 -1.89 -76.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081839413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.095 kcal (2) G-P(sol) polarization free energy of solvation -75.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds