Wall clock time and date at job start Fri Apr 10 2020 18:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 110.99870 * 2 1 4 4 C 1.46896 * 111.00215 * 123.95494 * 2 1 3 5 5 C 1.50700 * 109.47082 * 66.04272 * 4 2 1 6 6 C 1.35317 * 126.66384 * 90.02403 * 5 4 2 7 7 C 1.42272 * 103.92011 * 179.97438 * 6 5 4 8 8 C 1.48327 * 126.93491 * 180.26047 * 7 6 5 9 9 O 1.21503 * 120.00133 * 359.70574 * 8 7 6 10 10 N 1.34778 * 120.00115 * 179.70956 * 8 7 6 11 11 C 1.46503 * 120.00293 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.88148 * 31.11812 * 11 10 8 13 13 C 1.54913 * 111.00099 * 267.19565 * 11 10 8 14 14 N 1.47432 * 104.82903 * 204.91515 * 13 11 10 15 15 C 1.36938 * 125.64663 * 204.08727 * 14 13 11 16 16 H 1.07990 * 120.00026 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99575 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00156 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99856 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47386 * 89.99133 * 19 17 15 21 21 H 1.48499 * 109.47232 * 209.99543 * 19 17 15 22 22 H 1.48508 * 109.47038 * 329.99615 * 19 17 15 23 23 C 1.47020 * 108.70126 * 24.12980 * 14 13 11 24 24 C 1.54323 * 107.27458 * 358.94237 * 23 14 13 25 25 H 1.09007 * 110.87394 * 219.37797 * 24 23 14 26 26 O 1.42899 * 110.72235 * 96.16812 * 24 23 14 27 27 N 1.30984 * 106.12336 * 359.97438 * 7 6 5 28 28 O 1.20900 * 111.43877 * 0.02562 * 27 7 6 29 29 H 1.09003 * 109.47028 * 296.05002 * 1 2 3 30 30 H 1.09005 * 109.46915 * 56.04597 * 1 2 3 31 31 H 1.08997 * 109.47162 * 176.04310 * 1 2 3 32 32 H 1.09002 * 109.46964 * 183.95818 * 3 2 1 33 33 H 1.08998 * 109.46970 * 303.95423 * 3 2 1 34 34 H 1.08993 * 109.46872 * 63.95638 * 3 2 1 35 35 H 1.09006 * 109.46945 * 306.04382 * 4 2 1 36 36 H 1.08999 * 109.47279 * 186.04815 * 4 2 1 37 37 H 1.07998 * 128.03623 * 359.97438 * 6 5 4 38 38 H 0.97001 * 119.99730 * 0.02562 * 10 8 7 39 39 H 1.08995 * 110.36747 * 323.75297 * 13 11 10 40 40 H 1.09000 * 110.36583 * 86.08112 * 13 11 10 41 41 H 0.97001 * 119.99942 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.88398 * 239.52656 * 23 14 13 43 43 H 1.09003 * 110.01363 * 118.43142 * 23 14 13 44 44 H 0.96702 * 113.99731 * 66.47942 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6369 -2.2204 0.9728 6 6 2.3709 -3.1673 0.3438 7 6 1.5897 -4.3491 0.4749 8 6 1.9266 -5.7013 -0.0332 9 8 2.9648 -5.8817 -0.6382 10 7 1.0813 -6.7299 0.1762 11 6 1.4138 -8.0653 -0.3261 12 1 2.4928 -8.2193 -0.3355 13 6 0.8066 -8.2966 -1.7324 14 7 0.6682 -9.7599 -1.8476 15 6 0.6244 -10.4676 -3.0191 16 1 0.6942 -9.9510 -3.9649 17 6 0.4904 -11.8489 -2.9909 18 7 0.4058 -12.4785 -1.8381 19 14 0.4299 -12.8143 -4.5889 20 1 1.8072 -13.2046 -4.9839 21 1 -0.3952 -14.0343 -4.3994 22 1 -0.1703 -11.9713 -5.6541 23 6 0.5839 -10.3333 -0.4964 24 6 0.7021 -9.1653 0.5052 25 1 1.3079 -9.4510 1.3653 26 8 -0.5914 -8.7252 0.9238 27 7 0.5157 -4.0032 1.1403 28 8 0.5297 -2.8275 1.4216 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0828 1.3433 -0.0709 33 1 1.5898 1.9163 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5612 -0.3872 2.0628 36 1 3.0798 -0.6611 1.1756 37 1 3.3275 -3.0526 -0.1443 38 1 0.2523 -6.5858 0.6589 39 1 -0.1688 -7.8162 -1.8081 40 1 1.4782 -7.9173 -2.5026 41 1 0.3125 -13.4438 -1.8184 42 1 1.4004 -11.0386 -0.3414 43 1 -0.3727 -10.8390 -0.3648 44 1 -1.0781 -9.3767 1.4472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083590933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:54 Heat of formation + Delta-G solvation = 24.867306 kcal Electronic energy + Delta-G solvation = -27359.967753 eV Core-core repulsion = 23317.392576 eV Total energy + Delta-G solvation = -4042.575177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.24729 -39.66245 -38.00736 -37.90082 -34.84802 -34.19848 -34.00153 -32.64002 -31.58574 -28.57657 -28.05777 -27.78670 -27.23407 -25.07746 -23.95404 -23.23858 -22.27677 -20.57694 -20.26980 -19.80782 -18.05709 -17.92105 -17.35107 -16.76624 -16.69433 -15.80593 -15.73294 -15.38336 -15.19792 -14.80860 -14.62759 -14.23459 -13.97273 -13.86250 -13.28835 -13.15434 -12.89115 -12.73939 -12.65308 -12.60836 -12.25615 -12.23781 -12.10019 -11.58923 -11.30626 -10.99299 -10.84064 -10.58676 -10.51270 -10.50712 -10.21341 -10.02312 -9.81806 -9.79536 -9.32170 -8.92923 -8.77550 -8.65299 -6.87959 -5.74769 -3.07886 0.97959 1.51176 2.65371 3.03960 3.24060 3.40808 3.45715 3.47728 3.54978 3.88480 4.18402 4.49447 4.55264 4.59981 4.74459 4.78459 4.89569 4.94003 5.12180 5.14792 5.21319 5.27665 5.28886 5.36894 5.40108 5.53734 5.55485 5.69055 5.71796 5.85119 6.03813 6.19541 6.35427 6.41954 6.51296 6.63230 6.89237 7.32671 7.44147 7.59825 7.73816 7.90759 8.07051 8.19270 8.27933 9.17817 9.77745 10.42128 11.37562 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.002359 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.847260 B =11865.154322 C =12328.089168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.545 5.545 3 C 0.025 3.975 4 C 0.138 3.862 5 C -0.039 4.039 6 C -0.156 4.156 7 C -0.020 4.020 8 C 0.592 3.408 9 O -0.525 6.525 10 N -0.690 5.690 11 C 0.136 3.864 12 H 0.109 0.891 13 C 0.131 3.869 14 N -0.600 5.600 15 C -0.224 4.224 16 H 0.080 0.920 17 C -0.010 4.010 18 N -0.927 5.927 19 Si 0.916 3.084 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.155 3.845 24 C 0.068 3.932 25 H 0.062 0.938 26 O -0.567 6.567 27 N -0.326 5.326 28 O 0.120 5.880 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.182 0.818 38 H 0.413 0.587 39 H 0.027 0.973 40 H 0.046 0.954 41 H 0.253 0.747 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.817 25.056 10.604 27.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.269 5.269 3 C -0.123 4.123 4 C 0.009 3.991 5 C -0.102 4.102 6 C -0.179 4.179 7 C -0.180 4.180 8 C 0.375 3.625 9 O -0.400 6.400 10 N -0.341 5.341 11 C 0.031 3.969 12 H 0.127 0.873 13 C 0.004 3.996 14 N -0.327 5.327 15 C -0.352 4.352 16 H 0.098 0.902 17 C -0.206 4.206 18 N -0.575 5.575 19 Si 0.746 3.254 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.029 3.971 24 C 0.008 3.992 25 H 0.080 0.920 26 O -0.373 6.373 27 N -0.027 5.027 28 O 0.044 5.956 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.129 0.871 37 H 0.199 0.801 38 H 0.250 0.750 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.806 24.242 9.728 26.184 hybrid contribution -0.221 -0.493 0.080 0.546 sum 1.585 23.749 9.808 25.744 Atomic orbital electron populations 1.22490 0.86430 1.02958 1.01040 1.61972 1.08903 1.14276 1.41798 1.22404 1.01102 0.87683 1.01091 1.20520 1.01526 0.83825 0.93207 1.24154 0.87976 0.97229 1.00850 1.22416 1.03187 0.89485 1.02803 1.23605 0.93375 0.97823 1.03161 1.16917 0.84008 0.81807 0.79723 1.90812 1.24871 1.83238 1.41050 1.45659 1.23579 1.08305 1.56541 1.22483 1.00136 0.78921 0.95338 0.87327 1.21836 0.97394 0.87094 0.93304 1.44275 1.86448 0.99614 1.02357 1.19095 1.42933 0.88999 0.84182 0.90218 1.24801 1.02159 0.96317 0.97294 1.69911 1.56962 1.07826 1.22775 0.86055 0.77527 0.79480 0.82334 1.21521 1.21676 1.20652 1.21863 1.01964 0.90705 0.82528 1.23529 0.83733 0.95433 0.96538 0.91986 1.86265 1.30165 1.45855 1.75043 1.74207 1.20272 0.94060 1.14136 1.84774 1.37071 1.15770 1.58015 0.94907 0.90808 0.91128 0.90843 0.90728 0.95162 0.91977 0.87059 0.80103 0.75005 0.95518 0.93578 0.93705 0.92539 0.92789 0.77194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.37 60.07 0.56 0.69 16 2 N -0.54 -3.73 5.01 -252.72 -1.27 -4.99 16 3 C 0.02 0.11 9.57 60.07 0.57 0.69 16 4 C 0.14 0.84 5.52 -4.98 -0.03 0.81 16 5 C -0.04 -0.37 6.03 -35.35 -0.21 -0.58 16 6 C -0.16 -1.80 10.92 -39.07 -0.43 -2.23 16 7 C -0.02 -0.29 7.19 -82.53 -0.59 -0.89 16 8 C 0.59 10.23 7.85 -12.11 -0.10 10.13 16 9 O -0.52 -10.42 16.59 5.36 0.09 -10.33 16 10 N -0.69 -11.88 5.16 -52.51 -0.27 -12.15 16 11 C 0.14 2.65 3.31 -65.78 -0.22 2.43 16 12 H 0.11 2.18 7.54 -51.93 -0.39 1.79 16 13 C 0.13 2.97 6.92 -2.52 -0.02 2.95 16 14 N -0.60 -15.73 3.39 -170.07 -0.58 -16.31 16 15 C -0.22 -6.38 10.28 -15.06 -0.15 -6.54 16 16 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 18 N -0.93 -27.03 10.31 55.49 0.57 -26.46 16 19 Si 0.92 22.40 29.55 -169.99 -5.02 17.37 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.15 3.69 5.14 -3.07 -0.02 3.67 16 24 C 0.07 1.26 4.20 -24.90 -0.10 1.16 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 O -0.57 -9.57 12.14 -35.23 -0.43 -10.00 16 27 N -0.33 -4.47 11.84 33.29 0.39 -4.08 16 28 O 0.12 1.36 10.61 17.26 0.18 1.54 16 29 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 0.59 6.83 -51.93 -0.35 0.24 16 32 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 33 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 34 H 0.03 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16 36 H 0.11 0.48 8.06 -51.93 -0.42 0.06 16 37 H 0.18 1.84 8.06 -52.49 -0.42 1.41 16 38 H 0.41 6.80 7.35 -40.82 -0.30 6.50 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.06 1.47 7.38 -51.93 -0.38 1.08 16 43 H 0.05 1.40 7.43 -51.93 -0.39 1.01 16 44 H 0.38 4.96 9.12 45.56 0.42 5.38 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -33.79 368.83 -7.18 -40.97 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.59 Total: 6.95 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -0.82 Total: 11.92 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -1.15 Total: -63.99 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.16 Total: -18.79 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.79 -7.18 -40.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083590933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.838 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds