Wall clock time and date at job start Fri Apr 10 2020 18:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 110.99870 * 2 1 4 4 C 1.46896 * 111.00215 * 123.95494 * 2 1 3 5 5 C 1.50700 * 109.47082 * 66.04272 * 4 2 1 6 6 C 1.35317 * 126.66384 * 90.02403 * 5 4 2 7 7 C 1.42272 * 103.92011 * 179.97438 * 6 5 4 8 8 C 1.48327 * 126.93491 * 180.26047 * 7 6 5 9 9 O 1.21503 * 120.00133 * 359.70574 * 8 7 6 10 10 N 1.34778 * 120.00115 * 179.70956 * 8 7 6 11 11 C 1.46503 * 120.00293 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.88148 * 31.11812 * 11 10 8 13 13 C 1.54913 * 111.00099 * 267.19565 * 11 10 8 14 14 N 1.47432 * 104.82903 * 204.91515 * 13 11 10 15 15 C 1.36938 * 125.64663 * 204.08727 * 14 13 11 16 16 H 1.07990 * 120.00026 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99575 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00156 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99856 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47386 * 89.99133 * 19 17 15 21 21 H 1.48499 * 109.47232 * 209.99543 * 19 17 15 22 22 H 1.48508 * 109.47038 * 329.99615 * 19 17 15 23 23 C 1.47020 * 108.70126 * 24.12980 * 14 13 11 24 24 C 1.54323 * 107.27458 * 358.94237 * 23 14 13 25 25 H 1.09007 * 110.87394 * 219.37797 * 24 23 14 26 26 O 1.42899 * 110.72235 * 96.16812 * 24 23 14 27 27 N 1.30984 * 106.12336 * 359.97438 * 7 6 5 28 28 O 1.20900 * 111.43877 * 0.02562 * 27 7 6 29 29 H 1.09003 * 109.47028 * 296.05002 * 1 2 3 30 30 H 1.09005 * 109.46915 * 56.04597 * 1 2 3 31 31 H 1.08997 * 109.47162 * 176.04310 * 1 2 3 32 32 H 1.09002 * 109.46964 * 183.95818 * 3 2 1 33 33 H 1.08998 * 109.46970 * 303.95423 * 3 2 1 34 34 H 1.08993 * 109.46872 * 63.95638 * 3 2 1 35 35 H 1.09006 * 109.46945 * 306.04382 * 4 2 1 36 36 H 1.08999 * 109.47279 * 186.04815 * 4 2 1 37 37 H 1.07998 * 128.03623 * 359.97438 * 6 5 4 38 38 H 0.97001 * 119.99730 * 0.02562 * 10 8 7 39 39 H 1.08995 * 110.36747 * 323.75297 * 13 11 10 40 40 H 1.09000 * 110.36583 * 86.08112 * 13 11 10 41 41 H 0.97001 * 119.99942 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.88398 * 239.52656 * 23 14 13 43 43 H 1.09003 * 110.01363 * 118.43142 * 23 14 13 44 44 H 0.96702 * 113.99731 * 66.47942 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6369 -2.2204 0.9728 6 6 2.3709 -3.1673 0.3438 7 6 1.5897 -4.3491 0.4749 8 6 1.9266 -5.7013 -0.0332 9 8 2.9648 -5.8817 -0.6382 10 7 1.0813 -6.7299 0.1762 11 6 1.4138 -8.0653 -0.3261 12 1 2.4928 -8.2193 -0.3355 13 6 0.8066 -8.2966 -1.7324 14 7 0.6682 -9.7599 -1.8476 15 6 0.6244 -10.4676 -3.0191 16 1 0.6942 -9.9510 -3.9649 17 6 0.4904 -11.8489 -2.9909 18 7 0.4058 -12.4785 -1.8381 19 14 0.4299 -12.8143 -4.5889 20 1 1.8072 -13.2046 -4.9839 21 1 -0.3952 -14.0343 -4.3994 22 1 -0.1703 -11.9713 -5.6541 23 6 0.5839 -10.3333 -0.4964 24 6 0.7021 -9.1653 0.5052 25 1 1.3079 -9.4510 1.3653 26 8 -0.5914 -8.7252 0.9238 27 7 0.5157 -4.0032 1.1403 28 8 0.5297 -2.8275 1.4216 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0828 1.3433 -0.0709 33 1 1.5898 1.9163 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5612 -0.3872 2.0628 36 1 3.0798 -0.6611 1.1756 37 1 3.3275 -3.0526 -0.1443 38 1 0.2523 -6.5858 0.6589 39 1 -0.1688 -7.8162 -1.8081 40 1 1.4782 -7.9173 -2.5026 41 1 0.3125 -13.4438 -1.8184 42 1 1.4004 -11.0386 -0.3414 43 1 -0.3727 -10.8390 -0.3648 44 1 -1.0781 -9.3767 1.4472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083590933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:53 Heat of formation + Delta-G solvation = -3.260551 kcal Electronic energy + Delta-G solvation = -27361.187469 eV Core-core repulsion = 23317.392576 eV Total energy + Delta-G solvation = -4043.794893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -46.22543 -41.14223 -39.50905 -38.48232 -36.52206 -35.66293 -35.11724 -33.76392 -33.27836 -30.40117 -28.99681 -28.53758 -28.31842 -26.79913 -25.44364 -24.04525 -23.02691 -22.36937 -21.81356 -21.17110 -19.29804 -19.00302 -18.71540 -18.38716 -17.90491 -17.00452 -16.75543 -16.27071 -16.22375 -16.05693 -15.99169 -15.76684 -15.46295 -14.86383 -14.78448 -14.57156 -14.40618 -14.04008 -13.79871 -13.41899 -13.22958 -13.07117 -12.88674 -12.77227 -12.72702 -12.53408 -12.39234 -12.34447 -12.17830 -12.03143 -11.90845 -11.59164 -11.54101 -10.93549 -10.79162 -10.64162 -10.28851 -9.36138 -8.99024 -7.91017 -5.27503 -0.03333 0.58260 1.44439 1.46660 1.55034 1.66815 1.91555 1.97524 2.46077 2.78587 3.08140 3.12134 3.27897 3.38636 3.59957 3.75704 3.86341 3.86919 4.05111 4.11974 4.17951 4.30585 4.39501 4.43381 4.58085 4.58723 4.60677 4.75388 4.76266 4.79700 4.87822 4.88673 5.04712 5.13524 5.23998 5.35448 5.42843 5.61652 5.92072 6.01263 6.10997 6.25276 6.76794 6.90071 6.98445 7.03613 7.66863 8.30791 9.19059 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.002359 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.847260 B =11865.154322 C =12328.089168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.564 5.564 3 C 0.026 3.974 4 C 0.137 3.863 5 C -0.015 4.015 6 C -0.166 4.166 7 C -0.045 4.045 8 C 0.594 3.406 9 O -0.555 6.555 10 N -0.683 5.683 11 C 0.149 3.851 12 H 0.103 0.897 13 C 0.132 3.868 14 N -0.620 5.620 15 C -0.248 4.248 16 H 0.078 0.922 17 C -0.061 4.061 18 N -0.948 5.948 19 Si 0.982 3.018 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.272 1.272 23 C 0.161 3.839 24 C 0.090 3.910 25 H 0.095 0.905 26 O -0.567 6.567 27 N -0.340 5.340 28 O 0.132 5.868 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.135 0.865 37 H 0.193 0.807 38 H 0.419 0.581 39 H 0.022 0.978 40 H 0.034 0.966 41 H 0.250 0.750 42 H 0.029 0.971 43 H 0.028 0.972 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 27.263 11.525 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.289 5.289 3 C -0.121 4.121 4 C 0.009 3.991 5 C -0.079 4.079 6 C -0.190 4.190 7 C -0.203 4.203 8 C 0.379 3.621 9 O -0.432 6.432 10 N -0.334 5.334 11 C 0.043 3.957 12 H 0.121 0.879 13 C 0.005 3.995 14 N -0.347 5.347 15 C -0.377 4.377 16 H 0.095 0.905 17 C -0.254 4.254 18 N -0.596 5.596 19 Si 0.810 3.190 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.197 1.197 23 C 0.036 3.964 24 C 0.030 3.970 25 H 0.112 0.888 26 O -0.376 6.376 27 N -0.039 5.039 28 O 0.053 5.947 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.153 0.847 37 H 0.210 0.790 38 H 0.257 0.743 39 H 0.039 0.961 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 1.929 26.460 10.672 28.597 hybrid contribution -0.312 -1.048 -0.192 1.110 sum 1.617 25.412 10.480 27.536 Atomic orbital electron populations 1.22465 0.86756 1.01768 1.01921 1.61950 1.08856 1.15783 1.42296 1.22445 1.01600 0.86346 1.01748 1.20792 1.03072 0.81302 0.93927 1.24743 0.86210 0.98369 0.98563 1.22603 1.03868 0.88827 1.03684 1.23334 0.94877 0.97126 1.04945 1.17237 0.83311 0.82662 0.78875 1.90788 1.26089 1.83961 1.42403 1.45514 1.23915 1.07539 1.56469 1.22130 0.99578 0.80499 0.93541 0.87922 1.21857 0.96991 0.85369 0.95283 1.44549 1.86386 1.01067 1.02733 1.19414 1.43285 0.89769 0.85186 0.90455 1.25643 1.02011 0.97130 1.00635 1.70106 1.57313 1.07727 1.24493 0.85029 0.77472 0.77819 0.78678 1.21061 1.21559 1.19739 1.21712 0.99427 0.92246 0.83017 1.23197 0.85023 0.92727 0.96038 0.88774 1.86232 1.29574 1.46455 1.75348 1.74201 1.20167 0.95161 1.14324 1.84751 1.37628 1.14998 1.57309 0.93663 0.90450 0.93221 0.89904 0.90698 0.93960 0.89909 0.84706 0.79022 0.74347 0.96051 0.94741 0.94037 0.95281 0.95369 0.74963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.37 127.69 1.20 1.42 16 2 N -0.56 -6.23 5.01 -953.45 -4.78 -11.01 16 3 C 0.03 0.15 9.57 127.69 1.22 1.38 16 4 C 0.14 1.23 5.52 85.56 0.47 1.71 16 5 C -0.02 -0.26 6.03 25.01 0.15 -0.11 16 6 C -0.17 -3.62 10.92 22.60 0.25 -3.38 16 7 C -0.05 -1.29 7.19 42.96 0.31 -0.98 16 8 C 0.59 20.50 7.85 86.93 0.68 21.19 16 9 O -0.56 -22.28 16.59 -3.72 -0.06 -22.34 16 10 N -0.68 -23.30 5.16 -438.34 -2.26 -25.57 16 11 C 0.15 5.78 3.31 46.38 0.15 5.93 16 12 H 0.10 4.16 7.54 -2.39 -0.02 4.14 16 13 C 0.13 6.12 6.92 86.85 0.60 6.72 16 14 N -0.62 -33.39 3.39 -691.97 -2.35 -35.74 16 15 C -0.25 -14.46 10.28 84.03 0.86 -13.59 16 16 H 0.08 4.40 7.83 -2.92 -0.02 4.38 16 17 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 18 N -0.95 -56.42 10.31 21.65 0.22 -56.20 16 19 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 C 0.16 7.85 5.14 86.73 0.45 8.30 16 24 C 0.09 3.31 4.20 31.78 0.13 3.44 16 25 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 26 O -0.57 -18.36 12.14 -148.98 -1.81 -20.17 16 27 N -0.34 -8.98 11.84 -49.53 -0.59 -9.57 16 28 O 0.13 2.77 10.61 71.94 0.76 3.53 16 29 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.08 0.80 8.12 -2.38 -0.02 0.79 16 31 H 0.05 0.77 6.83 -2.39 -0.02 0.75 16 32 H 0.08 0.35 8.12 -2.39 -0.02 0.33 16 33 H 0.07 0.45 8.12 -2.39 -0.02 0.43 16 34 H 0.04 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.08 0.46 8.12 -2.38 -0.02 0.44 16 36 H 0.14 0.63 8.06 -2.39 -0.02 0.61 16 37 H 0.19 3.64 8.06 -2.91 -0.02 3.61 16 38 H 0.42 13.45 7.35 -92.71 -0.68 12.77 16 39 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.03 1.56 7.38 -2.39 -0.02 1.54 16 43 H 0.03 1.50 7.43 -2.39 -0.02 1.48 16 44 H 0.40 9.72 9.12 -74.06 -0.68 9.04 16 Total: -1.00 -74.39 368.83 -2.21 -76.59 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -0.32 Total: 22.94 kcal Atomic # 6 Polarization: 22.03 SS G_CDS: 6.94 Total: 28.97 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -9.75 Total: -138.08 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -1.11 Total: -38.97 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -74.39 -2.21 -76.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083590933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.333 kcal (2) G-P(sol) polarization free energy of solvation -74.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds