Wall clock time and date at job start Fri Apr 10 2020 18:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86791 * 119.99925 * 2 1 4 4 H 1.48501 * 109.47196 * 269.99503 * 3 2 1 5 5 H 1.48503 * 109.47443 * 29.99777 * 3 2 1 6 6 H 1.48500 * 109.47506 * 149.99728 * 3 2 1 7 7 C 1.38812 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99912 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99963 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99967 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.57283 * 324.84544 * 10 9 7 12 12 C 1.53805 * 109.52023 * 204.68924 * 10 9 7 13 13 C 1.52446 * 109.41794 * 162.22538 * 12 10 9 14 14 C 1.53962 * 110.73451 * 113.72909 * 13 12 10 15 15 C 1.52887 * 109.71707 * 315.64604 * 14 13 12 16 16 C 1.53054 * 109.24072 * 287.12418 * 15 14 13 17 17 N 1.45335 * 108.62565 * 77.97125 * 16 15 14 18 18 C 1.34777 * 120.35158 * 223.24884 * 17 16 15 19 19 O 1.21283 * 119.99546 * 179.72597 * 18 17 16 20 20 C 1.50696 * 120.00037 * 359.73040 * 18 17 16 21 21 C 1.53001 * 109.46922 * 179.97438 * 20 18 17 22 22 H 1.09000 * 110.91026 * 302.57359 * 21 20 18 23 23 C 1.54489 * 110.99647 * 66.45373 * 21 20 18 24 24 O 1.45417 * 105.67642 * 143.43883 * 23 21 20 25 25 C 1.33827 * 111.66887 * 342.89944 * 24 23 21 26 26 O 1.20825 * 124.94790 * 180.55778 * 25 24 23 27 27 C 1.51325 * 110.09754 * 0.53694 * 25 24 23 28 28 C 1.46960 * 119.29279 * 42.98049 * 17 16 15 29 29 H 0.96996 * 119.99847 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99917 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47675 * 282.20492 * 12 10 9 32 32 H 1.08995 * 109.47859 * 42.22548 * 12 10 9 33 33 H 1.09002 * 109.22320 * 234.05371 * 13 12 10 34 34 H 1.08997 * 109.22743 * 353.44568 * 13 12 10 35 35 H 1.08998 * 109.43059 * 75.71825 * 14 13 12 36 36 H 1.09001 * 109.43477 * 195.61824 * 14 13 12 37 37 H 1.09003 * 109.47664 * 47.08652 * 15 14 13 38 38 H 1.08989 * 109.48232 * 167.12484 * 15 14 13 39 39 H 1.08997 * 109.64469 * 318.13030 * 16 15 14 40 40 H 1.09002 * 109.48684 * 197.72453 * 16 15 14 41 41 H 1.08994 * 109.47361 * 59.99891 * 20 18 17 42 42 H 1.09005 * 109.46969 * 299.99414 * 20 18 17 43 43 H 1.09002 * 110.22210 * 24.36249 * 23 21 20 44 44 H 1.09006 * 110.21780 * 262.51220 * 23 21 20 45 45 H 1.09007 * 110.53179 * 134.66930 * 27 25 24 46 46 H 1.08997 * 110.53847 * 257.29738 * 27 25 24 47 47 H 1.09003 * 109.53138 * 8.53539 * 28 17 16 48 48 H 1.09006 * 109.53520 * 128.68359 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5673 -3.2071 0.5920 12 6 5.5095 -2.2576 0.6072 13 6 6.0964 -3.6044 1.0143 14 6 7.3241 -3.9474 0.1510 15 6 7.0256 -3.6384 -1.3163 16 6 6.0569 -4.6882 -1.8658 17 7 4.7164 -4.3703 -1.4031 18 6 3.9034 -5.3450 -0.9497 19 8 2.7877 -5.0717 -0.5604 20 6 4.3807 -6.7742 -0.9263 21 6 3.2739 -7.6724 -0.3704 22 1 2.9735 -7.3482 0.6260 23 6 2.0620 -7.7145 -1.3276 24 8 1.5548 -9.0756 -1.2598 25 6 2.4553 -9.9128 -0.7314 26 8 2.2881 -11.0988 -0.5726 27 6 3.7137 -9.1575 -0.3624 28 6 4.2589 -2.9740 -1.4293 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3621 0.0014 31 1 6.1581 -1.7869 -0.1316 32 1 5.4311 -1.6150 1.4840 33 1 6.3943 -3.5641 2.0621 34 1 5.3404 -4.3789 0.8859 35 1 8.1765 -3.3533 0.4804 36 1 7.5578 -5.0067 0.2574 37 1 6.5744 -2.6492 -1.3948 38 1 7.9528 -3.6617 -1.8886 39 1 6.3446 -5.6761 -1.5063 40 1 6.0827 -4.6718 -2.9554 41 1 5.2639 -6.8519 -0.2925 42 1 4.6312 -7.0901 -1.9391 43 1 2.3768 -7.4800 -2.3445 44 1 1.2974 -7.0106 -0.9986 45 1 4.0572 -9.4489 0.6302 46 1 4.4948 -9.3313 -1.1025 47 1 4.9890 -2.3612 -1.9582 48 1 3.2968 -2.9151 -1.9382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088297807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:43 Heat of formation + Delta-G solvation = -98.835491 kcal Electronic energy + Delta-G solvation = -29306.383661 eV Core-core repulsion = 25361.984672 eV Total energy + Delta-G solvation = -3944.398990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.27737 -40.36595 -38.00023 -37.41257 -35.28180 -34.44591 -34.00912 -32.13519 -30.16061 -29.63752 -28.05959 -26.95493 -26.19897 -23.71524 -22.79343 -21.77308 -21.42417 -20.71557 -20.00304 -18.64880 -17.71823 -17.56297 -16.95726 -16.91215 -16.30521 -16.00029 -15.82534 -15.10018 -14.65027 -14.56165 -14.11972 -13.99052 -13.92725 -13.80213 -13.49534 -13.11213 -13.03974 -12.65040 -12.58426 -12.48348 -12.20365 -11.96644 -11.78801 -11.57257 -11.47003 -11.46093 -11.09733 -10.93585 -10.86388 -10.67929 -10.51695 -10.39826 -10.34812 -10.25728 -9.99733 -9.54128 -9.45084 -9.07488 -8.36519 -7.24635 -5.72783 -3.09662 1.97004 2.71953 3.01682 3.05710 3.36660 3.38453 3.45292 3.67261 3.91981 4.22700 4.40589 4.52034 4.60323 4.67037 4.79027 4.88833 4.92318 4.99305 5.08530 5.11923 5.13454 5.21101 5.25314 5.33672 5.40868 5.51717 5.54964 5.61626 5.66229 5.69102 5.76837 5.80988 5.87494 5.94356 5.96518 6.16516 6.27246 6.34354 6.50226 6.55441 6.66143 6.70193 7.02371 7.28666 7.55579 8.07629 8.31947 8.46470 9.24352 9.95377 10.13515 11.45473 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.003783 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.789068 B = 7400.431569 C = 9045.126487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.881 3.119 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.095 0.905 9 N -0.744 5.744 10 C 0.170 3.830 11 H 0.071 0.929 12 C -0.134 4.134 13 C -0.116 4.116 14 C -0.114 4.114 15 C -0.152 4.152 16 C 0.107 3.893 17 N -0.603 5.603 18 C 0.502 3.498 19 O -0.518 6.518 20 C -0.131 4.131 21 C -0.106 4.106 22 H 0.110 0.890 23 C 0.061 3.939 24 O -0.344 6.344 25 C 0.483 3.517 26 O -0.468 6.468 27 C -0.185 4.185 28 C 0.098 3.902 29 H 0.258 0.742 30 H 0.360 0.640 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.071 0.929 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.649 -13.749 -3.520 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.369 4.369 8 H 0.113 0.887 9 N -0.386 5.386 10 C 0.059 3.941 11 H 0.088 0.912 12 C -0.172 4.172 13 C -0.154 4.154 14 C -0.152 4.152 15 C -0.190 4.190 16 C -0.017 4.017 17 N -0.337 5.337 18 C 0.289 3.711 19 O -0.393 6.393 20 C -0.171 4.171 21 C -0.125 4.125 22 H 0.128 0.872 23 C -0.013 4.013 24 O -0.260 6.260 25 C 0.324 3.676 26 O -0.353 6.353 27 C -0.223 4.223 28 C -0.026 4.026 29 H 0.069 0.931 30 H 0.192 0.808 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.140 0.860 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.089 0.911 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.477 -14.235 -3.306 22.782 hybrid contribution 0.916 1.490 -0.090 1.751 sum 18.393 -12.746 -3.395 22.633 Atomic orbital electron populations 1.69708 1.05069 1.25625 1.57644 1.24681 0.95187 0.97000 1.02260 0.86602 0.79215 0.85355 0.77637 1.21225 1.21824 1.20421 1.19172 0.80385 0.94916 1.42474 0.88684 1.42764 1.04168 1.01746 1.89948 1.20669 0.90511 0.89590 0.93285 0.91157 1.22137 0.97297 0.96835 1.00981 1.21648 0.97108 0.98060 0.98555 1.21739 0.98047 1.00677 0.94702 1.22278 0.99138 1.01058 0.96513 1.21507 0.82503 0.99066 0.98616 1.47914 1.13971 1.08387 1.63455 1.20389 0.85587 0.86756 0.78351 1.90824 1.19472 1.83230 1.45767 1.21733 0.99280 0.92672 1.03463 1.22357 0.94987 0.92975 1.02139 0.87222 1.24268 0.97664 0.78819 1.00534 1.86781 1.43479 1.21441 1.74286 1.23021 0.84466 0.86437 0.73652 1.90719 1.80443 1.12992 1.51158 1.23091 0.98149 0.94982 1.06105 1.22554 1.00131 0.78744 1.01132 0.93146 0.80768 0.91890 0.91893 0.92751 0.91872 0.92249 0.92359 0.89266 0.91237 0.90337 0.92058 0.87996 0.88567 0.89492 0.86012 0.86778 0.86706 0.91088 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 21.81 27.74 -169.99 -4.71 17.10 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 7 C -0.24 -6.72 10.39 -15.06 -0.16 -6.88 16 8 H 0.10 2.97 8.06 -52.48 -0.42 2.55 16 9 N -0.74 -17.02 4.93 -53.35 -0.26 -17.28 16 10 C 0.17 3.08 2.39 -67.85 -0.16 2.92 16 11 H 0.07 1.48 6.14 -51.93 -0.32 1.16 16 12 C -0.13 -1.91 4.97 -26.60 -0.13 -2.05 16 13 C -0.12 -1.31 5.40 -26.51 -0.14 -1.45 16 14 C -0.11 -0.93 5.75 -26.29 -0.15 -1.09 16 15 C -0.15 -1.20 5.45 -26.76 -0.15 -1.35 16 16 C 0.11 0.82 5.85 -4.64 -0.03 0.79 16 17 N -0.60 -7.01 1.69 -174.60 -0.30 -7.31 16 18 C 0.50 6.16 5.95 -10.99 -0.07 6.10 16 19 O -0.52 -8.92 13.58 5.55 0.08 -8.84 16 20 C -0.13 -0.95 3.46 -27.88 -0.10 -1.04 16 21 C -0.11 -0.88 2.75 -88.84 -0.24 -1.12 16 22 H 0.11 1.04 8.07 -51.93 -0.42 0.62 16 23 C 0.06 0.63 6.57 37.94 0.25 0.88 16 24 O -0.34 -4.30 10.93 -37.88 -0.41 -4.72 16 25 C 0.48 5.66 8.65 36.31 0.31 5.97 16 26 O -0.47 -7.09 18.00 -18.43 -0.33 -7.42 16 27 C -0.18 -1.30 6.45 -26.58 -0.17 -1.47 16 28 C 0.10 1.54 4.76 -4.13 -0.02 1.52 16 29 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 30 H 0.36 8.02 5.66 -40.82 -0.23 7.79 16 31 H 0.06 0.81 5.47 -51.93 -0.28 0.52 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.78 5.38 -51.93 -0.28 0.50 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.39 7.85 -51.93 -0.41 -0.02 16 37 H 0.09 0.88 3.35 -51.93 -0.17 0.71 16 38 H 0.07 0.43 8.14 -51.94 -0.42 0.01 16 39 H 0.08 0.41 5.74 -51.93 -0.30 0.12 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.52 7.50 -51.93 -0.39 0.13 16 42 H 0.10 0.48 8.03 -51.93 -0.42 0.06 16 43 H 0.09 0.77 7.84 -51.93 -0.41 0.36 16 44 H 0.12 1.48 7.60 -51.93 -0.39 1.08 16 45 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.11 0.54 7.91 -51.93 -0.41 0.13 16 47 H 0.07 0.99 6.07 -51.93 -0.32 0.67 16 48 H 0.08 1.56 8.07 -51.93 -0.42 1.14 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -35.54 361.74 -8.06 -43.60 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.29 Total: 6.37 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.05 Total: 1.76 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.22 Total: -53.30 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.67 Total: -20.98 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.54 -8.06 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088297807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.236 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds