Wall clock time and date at job start Fri Apr 10 2020 18:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86791 * 119.99925 * 2 1 4 4 H 1.48501 * 109.47196 * 269.99503 * 3 2 1 5 5 H 1.48503 * 109.47443 * 29.99777 * 3 2 1 6 6 H 1.48500 * 109.47506 * 149.99728 * 3 2 1 7 7 C 1.38812 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99912 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99963 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99967 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.57283 * 324.84544 * 10 9 7 12 12 C 1.53805 * 109.52023 * 204.68924 * 10 9 7 13 13 C 1.52446 * 109.41794 * 162.22538 * 12 10 9 14 14 C 1.53962 * 110.73451 * 113.72909 * 13 12 10 15 15 C 1.52887 * 109.71707 * 315.64604 * 14 13 12 16 16 C 1.53054 * 109.24072 * 287.12418 * 15 14 13 17 17 N 1.45335 * 108.62565 * 77.97125 * 16 15 14 18 18 C 1.34777 * 120.35158 * 223.24884 * 17 16 15 19 19 O 1.21283 * 119.99546 * 179.72597 * 18 17 16 20 20 C 1.50696 * 120.00037 * 359.73040 * 18 17 16 21 21 C 1.53001 * 109.46922 * 179.97438 * 20 18 17 22 22 H 1.09000 * 110.91026 * 302.57359 * 21 20 18 23 23 C 1.54489 * 110.99647 * 66.45373 * 21 20 18 24 24 O 1.45417 * 105.67642 * 143.43883 * 23 21 20 25 25 C 1.33827 * 111.66887 * 342.89944 * 24 23 21 26 26 O 1.20825 * 124.94790 * 180.55778 * 25 24 23 27 27 C 1.51325 * 110.09754 * 0.53694 * 25 24 23 28 28 C 1.46960 * 119.29279 * 42.98049 * 17 16 15 29 29 H 0.96996 * 119.99847 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99917 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47675 * 282.20492 * 12 10 9 32 32 H 1.08995 * 109.47859 * 42.22548 * 12 10 9 33 33 H 1.09002 * 109.22320 * 234.05371 * 13 12 10 34 34 H 1.08997 * 109.22743 * 353.44568 * 13 12 10 35 35 H 1.08998 * 109.43059 * 75.71825 * 14 13 12 36 36 H 1.09001 * 109.43477 * 195.61824 * 14 13 12 37 37 H 1.09003 * 109.47664 * 47.08652 * 15 14 13 38 38 H 1.08989 * 109.48232 * 167.12484 * 15 14 13 39 39 H 1.08997 * 109.64469 * 318.13030 * 16 15 14 40 40 H 1.09002 * 109.48684 * 197.72453 * 16 15 14 41 41 H 1.08994 * 109.47361 * 59.99891 * 20 18 17 42 42 H 1.09005 * 109.46969 * 299.99414 * 20 18 17 43 43 H 1.09002 * 110.22210 * 24.36249 * 23 21 20 44 44 H 1.09006 * 110.21780 * 262.51220 * 23 21 20 45 45 H 1.09007 * 110.53179 * 134.66930 * 27 25 24 46 46 H 1.08997 * 110.53847 * 257.29738 * 27 25 24 47 47 H 1.09003 * 109.53138 * 8.53539 * 28 17 16 48 48 H 1.09006 * 109.53520 * 128.68359 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5673 -3.2071 0.5920 12 6 5.5095 -2.2576 0.6072 13 6 6.0964 -3.6044 1.0143 14 6 7.3241 -3.9474 0.1510 15 6 7.0256 -3.6384 -1.3163 16 6 6.0569 -4.6882 -1.8658 17 7 4.7164 -4.3703 -1.4031 18 6 3.9034 -5.3450 -0.9497 19 8 2.7877 -5.0717 -0.5604 20 6 4.3807 -6.7742 -0.9263 21 6 3.2739 -7.6724 -0.3704 22 1 2.9735 -7.3482 0.6260 23 6 2.0620 -7.7145 -1.3276 24 8 1.5548 -9.0756 -1.2598 25 6 2.4553 -9.9128 -0.7314 26 8 2.2881 -11.0988 -0.5726 27 6 3.7137 -9.1575 -0.3624 28 6 4.2589 -2.9740 -1.4293 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3621 0.0014 31 1 6.1581 -1.7869 -0.1316 32 1 5.4311 -1.6150 1.4840 33 1 6.3943 -3.5641 2.0621 34 1 5.3404 -4.3789 0.8859 35 1 8.1765 -3.3533 0.4804 36 1 7.5578 -5.0067 0.2574 37 1 6.5744 -2.6492 -1.3948 38 1 7.9528 -3.6617 -1.8886 39 1 6.3446 -5.6761 -1.5063 40 1 6.0827 -4.6718 -2.9554 41 1 5.2639 -6.8519 -0.2925 42 1 4.6312 -7.0901 -1.9391 43 1 2.3768 -7.4800 -2.3445 44 1 1.2974 -7.0106 -0.9986 45 1 4.0572 -9.4489 0.6302 46 1 4.4948 -9.3313 -1.1025 47 1 4.9890 -2.3612 -1.9582 48 1 3.2968 -2.9151 -1.9382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088297807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:42 Heat of formation + Delta-G solvation = -123.494069 kcal Electronic energy + Delta-G solvation = -29307.452937 eV Core-core repulsion = 25361.984672 eV Total energy + Delta-G solvation = -3945.468266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.15969 -41.35085 -39.02156 -38.44512 -36.76345 -35.27381 -35.03252 -33.94172 -31.73768 -30.45357 -29.01185 -27.95729 -27.10104 -25.38236 -23.85011 -22.73267 -22.31303 -21.98716 -20.87735 -19.80734 -19.37109 -18.57260 -17.87955 -17.76845 -17.28971 -17.05544 -16.87071 -16.39023 -15.99017 -15.66639 -15.29534 -15.03287 -14.86575 -14.73425 -14.66184 -14.35630 -14.09757 -13.93441 -13.72340 -13.55634 -13.17771 -13.05111 -12.87451 -12.78931 -12.61652 -12.27757 -12.19026 -12.15010 -11.94758 -11.84837 -11.69870 -11.52810 -11.45994 -11.38040 -11.31578 -11.20764 -11.00845 -10.50983 -9.66265 -9.08723 -8.00888 -5.35685 1.08006 1.35141 1.40689 1.48090 1.80343 2.11889 2.18043 2.48447 2.94964 3.19848 3.29769 3.51088 3.64771 3.70949 3.87685 4.01037 4.03942 4.15434 4.23693 4.27140 4.32559 4.42749 4.49319 4.53802 4.57293 4.65653 4.68778 4.70750 4.82078 4.87065 4.90200 4.94803 4.97780 5.09986 5.13302 5.22307 5.32838 5.35528 5.49332 5.52090 5.63398 5.75949 5.80748 5.83555 6.23704 6.39108 6.65825 7.09294 7.40077 7.83879 8.04769 9.21557 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.003783 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.789068 B = 7400.431569 C = 9045.126487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.070 4.070 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.248 1.248 7 C -0.223 4.223 8 H 0.042 0.958 9 N -0.748 5.748 10 C 0.167 3.833 11 H 0.031 0.969 12 C -0.125 4.125 13 C -0.114 4.114 14 C -0.107 4.107 15 C -0.151 4.151 16 C 0.099 3.901 17 N -0.599 5.599 18 C 0.492 3.508 19 O -0.583 6.583 20 C -0.117 4.117 21 C -0.099 4.099 22 H 0.090 0.910 23 C 0.059 3.941 24 O -0.371 6.371 25 C 0.476 3.524 26 O -0.512 6.512 27 C -0.160 4.160 28 C 0.114 3.886 29 H 0.257 0.743 30 H 0.367 0.633 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.078 0.922 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.135 0.865 46 H 0.157 0.843 47 H 0.096 0.904 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.640 -14.361 -4.373 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.260 4.260 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.172 1.172 7 C -0.354 4.354 8 H 0.060 0.940 9 N -0.391 5.391 10 C 0.059 3.941 11 H 0.049 0.951 12 C -0.163 4.163 13 C -0.152 4.152 14 C -0.144 4.144 15 C -0.189 4.189 16 C -0.023 4.023 17 N -0.331 5.331 18 C 0.282 3.718 19 O -0.463 6.463 20 C -0.156 4.156 21 C -0.119 4.119 22 H 0.108 0.892 23 C -0.015 4.015 24 O -0.287 6.287 25 C 0.320 3.680 26 O -0.400 6.400 27 C -0.197 4.197 28 C -0.012 4.012 29 H 0.065 0.935 30 H 0.200 0.800 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.096 0.904 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.122 0.878 44 H 0.106 0.894 45 H 0.153 0.847 46 H 0.174 0.826 47 H 0.114 0.886 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 23.578 -14.885 -4.178 28.195 hybrid contribution -1.036 1.585 0.174 1.901 sum 22.542 -13.300 -4.003 26.478 Atomic orbital electron populations 1.69933 1.07447 1.26587 1.60036 1.25600 0.96152 1.01507 1.02783 0.85308 0.78574 0.78995 0.78232 1.20053 1.22534 1.17246 1.18935 0.82807 0.92882 1.40768 0.94026 1.42712 1.02278 1.03966 1.90183 1.20829 0.91897 0.86659 0.94763 0.95084 1.22056 0.94801 0.98952 1.00487 1.21623 0.98348 0.95538 0.99673 1.21735 0.96113 1.02639 0.93920 1.22269 1.00215 0.99608 0.96790 1.21935 0.79536 1.01005 0.99808 1.47921 1.15856 1.06272 1.63100 1.21447 0.84702 0.88928 0.76751 1.90828 1.22529 1.84481 1.48456 1.21800 0.99477 0.87830 1.06527 1.22281 0.94503 0.94473 1.00611 0.89151 1.24285 0.97879 0.77243 1.02099 1.86738 1.45137 1.22423 1.74441 1.23838 0.85723 0.85994 0.72468 1.90689 1.81496 1.14926 1.52890 1.23065 0.96178 0.92102 1.08377 1.21936 0.98506 0.82176 0.98533 0.93473 0.79994 0.89651 0.93612 0.92489 0.93113 0.91361 0.89511 0.91632 0.88233 0.86460 0.90371 0.83993 0.84665 0.87752 0.89353 0.84694 0.82591 0.88623 0.95540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -66.17 13.97 21.65 0.30 -65.87 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.96 46.09 27.74 68.60 1.90 47.99 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 6 H -0.25 -10.52 6.52 99.48 0.65 -9.88 16 7 C -0.22 -13.34 10.39 84.03 0.87 -12.46 16 8 H 0.04 2.88 8.06 -2.91 -0.02 2.86 16 9 N -0.75 -35.36 4.93 -322.69 -1.59 -36.95 16 10 C 0.17 6.26 2.39 45.04 0.11 6.37 16 11 H 0.03 1.41 6.14 -2.39 -0.01 1.40 16 12 C -0.13 -3.39 4.97 30.68 0.15 -3.23 16 13 C -0.11 -2.25 5.40 30.74 0.17 -2.08 16 14 C -0.11 -1.15 5.75 30.88 0.18 -0.97 16 15 C -0.15 -1.55 5.45 30.57 0.17 -1.38 16 16 C 0.10 0.97 5.85 86.62 0.51 1.48 16 17 N -0.60 -12.79 1.69 -824.72 -1.40 -14.18 16 18 C 0.49 11.64 5.95 87.66 0.52 12.17 16 19 O -0.58 -21.74 13.58 -3.04 -0.04 -21.78 16 20 C -0.12 -1.19 3.46 29.85 0.10 -1.09 16 21 C -0.10 -1.47 2.75 -9.64 -0.03 -1.50 16 22 H 0.09 1.71 8.07 -2.39 -0.02 1.69 16 23 C 0.06 1.24 6.57 72.49 0.48 1.72 16 24 O -0.37 -9.59 10.93 -47.92 -0.52 -10.11 16 25 C 0.48 10.81 8.65 71.43 0.62 11.43 16 26 O -0.51 -15.54 18.00 21.67 0.39 -15.15 16 27 C -0.16 -1.67 6.45 30.69 0.20 -1.47 16 28 C 0.11 3.61 4.76 86.07 0.41 4.02 16 29 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 30 H 0.37 16.18 5.66 -92.71 -0.52 15.65 16 31 H 0.09 1.94 5.47 -2.39 -0.01 1.93 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.14 5.38 -2.39 -0.01 1.13 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 0.52 7.85 -2.39 -0.02 0.50 16 37 H 0.07 1.01 3.35 -2.39 -0.01 1.00 16 38 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.12 0.31 5.74 -2.39 -0.01 0.30 16 40 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.14 0.44 7.50 -2.39 -0.02 0.42 16 42 H 0.14 0.45 8.03 -2.38 -0.02 0.43 16 43 H 0.10 1.80 7.84 -2.39 -0.02 1.78 16 44 H 0.09 2.46 7.60 -2.38 -0.02 2.44 16 45 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.16 0.46 7.91 -2.39 -0.02 0.44 16 47 H 0.10 2.53 6.07 -2.39 -0.01 2.52 16 48 H 0.03 1.11 8.07 -2.38 -0.02 1.09 16 Total: -1.00 -90.62 361.74 4.36 -86.26 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.40 Total: 20.60 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 4.92 Total: 9.20 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -2.68 Total: -117.01 kcal Atomic # 8 Polarization: -46.86 SS G_CDS: -0.18 Total: -47.04 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 47.99 kcal Total: -90.62 4.36 -86.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088297807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.237 kcal (2) G-P(sol) polarization free energy of solvation -90.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds