Wall clock time and date at job start Fri Apr 10 2020 18:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35764 * 117.00117 * 2 1 4 4 C 1.35594 * 126.08617 * 175.33788 * 3 2 1 5 5 C 1.41057 * 107.79804 * 180.15722 * 4 3 2 6 6 C 1.47722 * 125.97994 * 179.82499 * 5 4 3 7 7 O 1.21570 * 120.00027 * 359.72040 * 6 5 4 8 8 N 1.34778 * 119.99982 * 179.71356 * 6 5 4 9 9 C 1.46500 * 120.00245 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.45729 * 324.98037 * 9 8 6 11 11 C 1.53044 * 109.44657 * 84.94030 * 9 8 6 12 12 C 1.52759 * 109.38112 * 181.25809 * 11 9 8 13 13 N 1.46925 * 109.00954 * 305.58525 * 12 11 9 14 14 C 1.36935 * 120.63274 * 233.58672 * 13 12 11 15 15 H 1.08004 * 119.99809 * 151.51739 * 14 13 12 16 16 C 1.38812 * 120.00339 * 331.52029 * 14 13 12 17 17 N 1.31624 * 119.99608 * 344.85237 * 16 14 13 18 18 Si 1.86795 * 120.00076 * 164.85137 * 16 14 13 19 19 H 1.48499 * 109.46933 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.47417 * 299.99908 * 18 16 14 21 21 H 1.48500 * 109.47028 * 60.00079 * 18 16 14 22 22 C 1.46927 * 118.73599 * 53.31216 * 13 12 11 23 23 C 1.53035 * 109.46212 * 205.00364 * 9 8 6 24 24 H 1.09000 * 109.49873 * 298.57961 * 23 9 8 25 25 O 1.42895 * 109.49880 * 58.67857 * 23 9 8 26 26 N 1.31862 * 108.03653 * 359.56599 * 5 4 3 27 27 N 1.35843 * 126.08459 * 355.01933 * 3 2 1 28 28 C 1.46499 * 125.94788 * 359.95573 * 27 3 2 29 29 H 1.09006 * 109.47343 * 176.20446 * 1 2 3 30 30 H 1.09005 * 109.47190 * 296.20072 * 1 2 3 31 31 H 1.08999 * 109.47258 * 56.20077 * 1 2 3 32 32 H 1.08006 * 126.10095 * 359.97438 * 4 3 2 33 33 H 0.96998 * 119.99805 * 0.02562 * 8 6 5 34 34 H 1.08997 * 109.49754 * 301.33320 * 11 9 8 35 35 H 1.08994 * 109.49721 * 61.42804 * 11 9 8 36 36 H 1.09009 * 109.50635 * 185.70694 * 12 11 9 37 37 H 1.08999 * 109.43858 * 65.42779 * 12 11 9 38 38 H 0.97002 * 119.99494 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.58323 * 66.43176 * 22 13 12 40 40 H 1.08997 * 109.58892 * 186.71435 * 22 13 12 41 41 H 0.96701 * 113.99990 * 179.83784 * 25 23 9 42 42 H 1.08995 * 109.47621 * 277.04161 * 28 27 3 43 43 H 1.08997 * 109.46937 * 37.04569 * 28 27 3 44 44 H 1.09005 * 109.47232 * 157.04085 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.3810 1.4254 0.0891 5 6 3.5958 2.8192 0.0568 6 6 4.9059 3.4974 0.1318 7 8 5.9245 2.8421 0.2364 8 7 4.9720 4.8427 0.0841 9 6 6.2713 5.5154 0.1591 10 1 6.9308 4.9582 0.8245 11 6 6.8929 5.5802 -1.2379 12 6 8.2613 6.2538 -1.1532 13 7 8.1118 7.5602 -0.4977 14 6 8.5802 8.6991 -1.0967 15 1 8.1072 9.6489 -0.8952 16 6 9.6629 8.6328 -1.9629 17 7 10.4228 7.5583 -1.9855 18 14 10.0414 10.0684 -3.0965 19 1 11.2392 9.7506 -3.9147 20 1 8.8811 10.3125 -3.9906 21 1 10.3051 11.2838 -2.2849 22 6 7.4448 7.6223 0.8099 23 6 6.0805 6.9339 0.7007 24 1 5.4410 7.4993 0.0228 25 8 5.4720 6.8735 1.9922 26 7 2.4227 3.4104 -0.0578 27 7 1.4341 2.4191 -0.0953 28 6 -0.0079 2.6467 -0.2172 29 1 -0.3634 -1.0255 -0.0680 30 1 -0.3634 0.4538 0.9221 31 1 -0.3634 0.5717 -0.8540 32 1 4.1442 0.6657 0.1730 33 1 4.1593 5.3655 0.0009 34 1 7.0069 4.5706 -1.6326 35 1 6.2458 6.1582 -1.8976 36 1 8.6615 6.3926 -2.1576 37 1 8.9381 5.6283 -0.5712 38 1 11.1795 7.5121 -2.5906 39 1 8.0537 7.1106 1.5553 40 1 7.3087 8.6636 1.1017 41 1 5.3232 7.7387 2.3977 42 1 -0.3060 2.5389 -1.2601 43 1 -0.5435 1.9177 0.3909 44 1 -0.2474 3.6528 0.1270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090424109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:24 Heat of formation + Delta-G solvation = 4.052627 kcal Electronic energy + Delta-G solvation = -27768.268634 eV Core-core repulsion = 23724.790865 eV Total energy + Delta-G solvation = -4043.477769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.82407 -39.63979 -38.56378 -37.70102 -35.35941 -34.27334 -33.74343 -31.93947 -30.56306 -29.78216 -28.54807 -28.19192 -26.71875 -25.19762 -23.35433 -22.25399 -21.77092 -21.43715 -19.95085 -19.37719 -18.31858 -17.09409 -17.04515 -16.56505 -16.40245 -16.05931 -15.64277 -15.19833 -15.06033 -14.82148 -14.43642 -14.28256 -14.02407 -13.85905 -13.50362 -13.43652 -13.24413 -13.09344 -12.70936 -12.23723 -12.04577 -11.82824 -11.66034 -11.51249 -11.08005 -10.99053 -10.84379 -10.64812 -10.30796 -10.22592 -10.00547 -9.88319 -9.67970 -9.43405 -9.39941 -8.70174 -8.63008 -8.41234 -6.72416 -5.80944 -3.26539 1.25147 1.86840 2.05722 2.54112 3.36490 3.40136 3.43490 3.44255 3.54184 3.92921 4.30796 4.37929 4.41902 4.56070 4.59452 4.67649 4.75904 4.98599 5.08610 5.27260 5.34708 5.38289 5.52600 5.61410 5.67726 5.72219 5.82078 6.02705 6.15767 6.22666 6.37510 6.52857 6.57562 6.72635 6.82593 6.89491 6.98853 7.15238 7.35223 7.66733 7.75918 7.81671 7.97868 8.41849 8.43127 9.17144 9.79056 10.35169 11.27485 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.002531 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.588211 B =11059.615909 C =11256.581886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.288 6.288 3 C 0.266 3.734 4 C -0.233 4.233 5 C 0.066 3.934 6 C 0.596 3.404 7 O -0.524 6.524 8 N -0.699 5.699 9 C 0.162 3.838 10 H 0.091 0.909 11 C -0.147 4.147 12 C 0.171 3.829 13 N -0.588 5.588 14 C -0.259 4.259 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.900 5.900 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.121 3.879 23 C 0.080 3.920 24 H 0.057 0.943 25 O -0.570 6.570 26 N -0.250 5.250 27 N -0.395 5.395 28 C 0.076 3.924 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.166 0.834 33 H 0.403 0.597 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.024 0.976 38 H 0.256 0.744 39 H 0.030 0.970 40 H 0.060 0.940 41 H 0.373 0.627 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.572 -10.970 4.116 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.194 6.194 3 C 0.099 3.901 4 C -0.263 4.263 5 C -0.102 4.102 6 C 0.378 3.622 7 O -0.398 6.398 8 N -0.348 5.348 9 C 0.058 3.942 10 H 0.109 0.891 11 C -0.188 4.188 12 C 0.044 3.956 13 N -0.312 5.312 14 C -0.388 4.388 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.544 5.544 18 Si 0.735 3.265 19 H -0.216 1.216 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.006 4.006 23 C 0.019 3.981 24 H 0.075 0.925 25 O -0.374 6.374 26 N -0.081 5.081 27 N -0.193 5.193 28 C -0.064 4.064 29 H 0.127 0.873 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.184 0.816 33 H 0.237 0.763 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.220 0.780 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -23.268 -11.308 3.878 26.159 hybrid contribution -0.285 0.866 -0.530 1.055 sum -23.553 -10.442 3.348 25.980 Atomic orbital electron populations 1.23641 0.78117 1.05314 1.01403 1.86310 1.21500 1.21624 1.89967 1.19545 0.91116 0.78924 1.00492 1.20387 0.92085 0.95741 1.18106 1.22006 0.92968 0.93071 1.02142 1.16856 0.85664 0.82336 0.77305 1.90821 1.34202 1.65194 1.49600 1.45963 1.10780 1.05541 1.72515 1.21094 0.83517 0.91216 0.98328 0.89109 1.22559 1.00814 1.01074 0.94332 1.20771 0.90028 0.84536 1.00221 1.44018 1.67172 1.04457 1.15589 1.19114 1.09262 0.87375 1.23054 0.91636 1.25096 0.95358 0.97487 1.01495 1.70007 1.16959 1.28587 1.38818 0.86327 0.77413 0.81944 0.80781 1.21561 1.20982 1.20858 1.21530 0.90995 0.98281 0.89825 1.22775 0.96109 0.95648 0.83563 0.92536 1.86494 1.83214 1.34195 1.33533 1.77730 0.95254 1.10918 1.24176 1.49058 1.07175 1.03067 1.59955 1.22526 0.74935 1.05632 1.03303 0.87262 0.91911 0.91769 0.81612 0.76287 0.91700 0.92289 0.88683 0.95745 0.93378 0.95229 0.92151 0.78032 0.90376 0.88638 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.37 101.05 0.95 0.99 16 2 O -0.29 -2.70 10.57 -19.00 -0.20 -2.90 16 3 C 0.27 3.10 7.78 -16.72 -0.13 2.97 16 4 C -0.23 -3.28 10.59 -39.46 -0.42 -3.70 16 5 C 0.07 1.02 7.09 -82.91 -0.59 0.43 16 6 C 0.60 10.57 7.79 -12.38 -0.10 10.48 16 7 O -0.52 -10.87 16.56 5.30 0.09 -10.78 16 8 N -0.70 -11.73 4.92 -54.75 -0.27 -12.00 16 9 C 0.16 3.05 2.12 -67.89 -0.14 2.91 16 10 H 0.09 1.93 7.58 -51.93 -0.39 1.53 16 11 C -0.15 -3.00 5.63 -26.83 -0.15 -3.15 16 12 C 0.17 4.14 5.27 -3.93 -0.02 4.12 16 13 N -0.59 -14.56 3.00 -172.58 -0.52 -15.08 16 14 C -0.26 -6.95 9.59 -15.06 -0.14 -7.10 16 15 H 0.07 1.71 7.87 -52.48 -0.41 1.29 16 16 C 0.00 0.13 4.96 -17.43 -0.09 0.04 16 17 N -0.90 -26.01 11.10 55.49 0.62 -25.40 16 18 Si 0.91 21.44 29.58 -169.99 -5.03 16.41 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.12 2.50 6.14 -3.71 -0.02 2.48 16 23 C 0.08 1.41 3.14 -26.61 -0.08 1.33 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 25 O -0.57 -8.91 13.16 -35.23 -0.46 -9.37 16 26 N -0.25 -3.44 12.26 33.34 0.41 -3.03 16 27 N -0.40 -4.25 4.03 -68.19 -0.28 -4.53 16 28 C 0.08 0.41 9.63 59.85 0.58 0.98 16 29 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.19 6.51 -51.93 -0.34 -0.15 16 31 H 0.06 0.19 6.00 -51.93 -0.31 -0.12 16 32 H 0.17 2.25 8.06 -52.48 -0.42 1.82 16 33 H 0.40 6.07 8.30 -40.82 -0.34 5.73 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.10 2.55 6.02 -51.92 -0.31 2.24 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 41 H 0.37 4.19 9.08 45.56 0.41 4.60 16 42 H 0.08 0.30 7.71 -51.93 -0.40 -0.10 16 43 H 0.10 0.26 4.53 -51.93 -0.24 0.02 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -34.64 360.52 -5.83 -40.47 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.26 Total: 8.00 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: -0.36 Total: 12.78 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.04 Total: -60.04 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.58 Total: -23.05 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.64 -5.83 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090424109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.523 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds