Wall clock time and date at job start Fri Apr 10 2020 18:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35850 * 117.00187 * 2 1 4 4 N 1.30804 * 126.05863 * 0.19361 * 3 2 1 5 5 N 1.39918 * 108.88196 * 180.23998 * 4 3 2 6 6 C 1.46493 * 125.69363 * 179.73531 * 5 4 3 7 7 C 1.34162 * 108.61910 * 359.73696 * 5 4 3 8 8 C 1.38130 * 107.51273 * 359.97438 * 7 5 4 9 9 C 1.47244 * 126.45241 * 179.97438 * 8 7 5 10 10 O 1.21626 * 120.00184 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00046 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00245 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.46157 * 35.00001 * 12 11 9 14 14 C 1.53043 * 109.45876 * 275.02680 * 12 11 9 15 15 C 1.53192 * 109.31034 * 178.61205 * 14 12 11 16 16 N 1.46925 * 108.77352 * 54.63474 * 15 14 12 17 17 C 1.36943 * 120.62891 * 126.36780 * 16 15 14 18 18 H 1.08007 * 119.99933 * 331.83490 * 17 16 15 19 19 C 1.38810 * 119.99982 * 151.83354 * 17 16 15 20 20 N 1.31612 * 120.00051 * 343.07604 * 19 17 16 21 21 Si 1.86804 * 119.99921 * 163.08087 * 19 17 16 22 22 H 1.48494 * 109.47196 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47107 * 119.99983 * 21 19 17 24 24 H 1.48497 * 109.47011 * 239.99986 * 21 19 17 25 25 C 1.46918 * 118.74204 * 306.39030 * 16 15 14 26 26 C 1.53038 * 109.46014 * 154.96856 * 12 11 9 27 27 H 1.08992 * 109.50441 * 301.34120 * 26 12 11 28 28 O 1.42904 * 109.49678 * 61.43929 * 26 12 11 29 29 H 1.09001 * 109.46998 * 59.99948 * 1 2 3 30 30 H 1.08999 * 109.47331 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47376 * 300.00275 * 1 2 3 32 32 H 1.09004 * 109.47431 * 270.00554 * 6 5 4 33 33 H 1.09001 * 109.46861 * 29.99961 * 6 5 4 34 34 H 1.09005 * 109.47636 * 150.00032 * 6 5 4 35 35 H 1.08005 * 126.24521 * 180.02562 * 7 5 4 36 36 H 0.97000 * 120.00065 * 359.72121 * 11 9 8 37 37 H 1.08992 * 109.49571 * 298.56274 * 14 12 11 38 38 H 1.09003 * 109.49763 * 58.66485 * 14 12 11 39 39 H 1.09004 * 109.58365 * 174.42033 * 15 14 12 40 40 H 1.08993 * 109.58834 * 294.84689 * 15 14 12 41 41 H 0.96998 * 120.00216 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.59010 * 173.39646 * 25 16 15 43 43 H 1.09002 * 109.58258 * 293.67764 * 25 16 15 44 44 H 0.96700 * 114.00450 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4532 2.3765 0.0036 5 7 2.4283 3.3800 -0.0034 6 6 2.1706 4.8221 -0.0077 7 6 3.6386 2.8011 -0.0055 8 6 3.4453 1.4335 0.0006 9 6 4.4955 0.4014 0.0004 10 8 4.1911 -0.7761 0.0058 11 7 5.7943 0.7616 -0.0058 12 6 6.8392 -0.2651 -0.0066 13 1 6.5060 -1.1220 -0.5922 14 6 7.1199 -0.7081 1.4311 15 6 8.1881 -1.8061 1.4236 16 7 9.3692 -1.3118 0.7029 17 6 10.6077 -1.3472 1.2862 18 1 10.7003 -1.2930 2.3609 19 6 11.7441 -1.4529 0.4961 20 7 11.6415 -1.8492 -0.7547 21 14 13.4192 -1.0328 1.2083 22 1 13.2643 -0.6161 2.6251 23 1 14.3010 -2.2255 1.1362 24 1 14.0238 0.0776 0.4295 25 6 9.1963 -0.7784 -0.6550 26 6 8.1169 0.3082 -0.6240 27 1 7.9107 0.6451 -1.6398 28 8 8.5728 1.4113 0.1618 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.1031 5.1761 -1.0364 33 1 1.2324 5.0250 0.5087 34 1 2.9846 5.3382 0.5015 35 1 4.5905 3.3115 -0.0102 36 1 6.0371 1.7007 -0.0142 37 1 7.4771 0.1430 2.0108 38 1 6.2039 -1.0947 1.8781 39 1 8.4631 -2.0554 2.4485 40 1 7.7982 -2.6918 0.9220 41 1 12.4355 -1.9227 -1.3070 42 1 10.1365 -0.3496 -1.0017 43 1 8.8910 -1.5808 -1.3266 44 1 9.3806 1.8249 -0.1721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090486317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:32 Heat of formation + Delta-G solvation = -9.100786 kcal Electronic energy + Delta-G solvation = -28120.388843 eV Core-core repulsion = 24076.340699 eV Total energy + Delta-G solvation = -4044.048144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.65100 -39.31488 -38.39957 -37.64602 -34.75059 -34.12956 -33.14287 -32.10365 -30.71251 -29.16714 -28.90556 -28.09600 -26.47824 -25.01753 -23.01378 -22.18683 -21.67875 -21.02351 -19.92672 -19.41200 -18.07700 -17.23393 -16.88609 -16.46362 -15.91195 -15.80248 -15.36696 -15.20669 -15.12556 -14.84725 -14.33688 -14.03180 -13.77045 -13.72789 -13.23360 -13.11538 -13.06489 -12.91600 -12.61004 -12.10720 -12.02080 -11.92608 -11.39734 -11.23656 -11.11166 -10.99176 -10.78965 -10.53524 -10.42065 -10.11249 -9.98828 -9.71070 -9.48676 -9.34353 -9.12768 -8.72643 -8.53474 -8.39946 -6.63865 -5.78701 -3.19369 1.29873 1.94055 2.16624 3.06335 3.36318 3.45389 3.48257 3.59697 3.67873 4.12731 4.41579 4.50218 4.72538 4.81629 4.88279 4.98599 5.04225 5.08396 5.21753 5.32497 5.34932 5.39913 5.51620 5.55571 5.61308 5.66472 6.04308 6.11071 6.29072 6.39361 6.49712 6.56999 6.66453 6.86808 6.97764 7.03458 7.07570 7.23372 7.41441 7.47573 7.80881 7.95305 8.27297 8.46211 8.65974 9.21207 9.84448 10.41818 11.30073 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024807 B = 0.002817 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.427175 B = 9936.060110 C =10629.825196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.265 6.265 3 C 0.315 3.685 4 N -0.355 5.355 5 N -0.351 5.351 6 C 0.101 3.899 7 C 0.122 3.878 8 C -0.285 4.285 9 C 0.588 3.412 10 O -0.535 6.535 11 N -0.719 5.719 12 C 0.166 3.834 13 H 0.090 0.910 14 C -0.136 4.136 15 C 0.148 3.852 16 N -0.583 5.583 17 C -0.240 4.240 18 H 0.066 0.934 19 C -0.002 4.002 20 N -0.907 5.907 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.145 3.855 26 C 0.074 3.926 27 H 0.043 0.957 28 O -0.560 6.560 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.191 0.809 36 H 0.396 0.604 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.252 0.748 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.571 14.727 -0.903 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.167 6.167 3 C 0.110 3.890 4 N -0.196 5.196 5 N -0.133 5.133 6 C -0.040 4.040 7 C -0.030 4.030 8 C -0.301 4.301 9 C 0.374 3.626 10 O -0.412 6.412 11 N -0.369 5.369 12 C 0.062 3.938 13 H 0.108 0.892 14 C -0.176 4.176 15 C 0.021 3.979 16 N -0.306 5.306 17 C -0.370 4.370 18 H 0.083 0.917 19 C -0.200 4.200 20 N -0.553 5.553 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.018 3.982 26 C 0.012 3.988 27 H 0.061 0.939 28 O -0.365 6.365 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.207 0.793 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.113 0.887 43 H 0.046 0.954 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -20.255 14.051 -0.636 24.660 hybrid contribution 2.018 0.626 -0.130 2.117 sum -18.237 14.677 -0.766 23.422 Atomic orbital electron populations 1.23025 0.77909 1.03782 1.01816 1.86538 1.21604 1.20378 1.88192 1.20425 0.90172 0.85199 0.93217 1.77286 1.13189 0.94614 1.34484 1.47650 1.03188 1.06452 1.55975 1.21998 1.04532 0.73590 1.03902 1.23097 0.91206 0.92230 0.96511 1.19836 0.91946 0.92686 1.25617 1.17103 0.81646 0.87468 0.76374 1.90805 1.82229 1.17960 1.50176 1.45991 1.05007 1.10432 1.75502 1.20962 0.84565 0.90149 0.98147 0.89170 1.22295 0.99034 1.00653 0.95630 1.20905 0.87419 0.93048 0.96540 1.43888 1.03012 1.69803 1.13861 1.19231 0.82568 1.43544 0.91638 0.91668 1.25022 0.97976 1.00302 0.96679 1.70027 1.28121 1.49502 1.07601 0.86222 0.84376 0.77681 0.78512 1.20298 1.21846 1.21703 1.21426 0.96677 0.92808 0.87265 1.22836 0.94861 0.89321 0.91735 0.93918 1.86344 1.46457 1.47488 1.56243 0.92577 0.88008 0.92552 0.90214 0.88935 0.88778 0.79258 0.77040 0.91318 0.92788 0.92528 0.96201 0.93750 0.88744 0.95428 0.77964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.70 101.05 1.08 1.39 16 2 O -0.27 -4.03 9.98 -24.63 -0.25 -4.28 16 3 C 0.32 4.65 7.85 -16.66 -0.13 4.52 16 4 N -0.36 -4.50 11.90 30.79 0.37 -4.13 16 5 N -0.35 -3.29 3.97 -67.60 -0.27 -3.55 16 6 C 0.10 0.42 11.44 59.84 0.68 1.10 16 7 C 0.12 1.17 10.98 -16.57 -0.18 0.99 16 8 C -0.29 -4.05 6.14 -104.95 -0.64 -4.69 16 9 C 0.59 9.98 7.77 -12.60 -0.10 9.88 16 10 O -0.53 -11.27 16.09 -0.11 0.00 -11.27 16 11 N -0.72 -11.04 5.04 -54.90 -0.28 -11.32 16 12 C 0.17 3.02 2.20 -67.89 -0.15 2.87 16 13 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 14 C -0.14 -2.65 5.51 -26.61 -0.15 -2.80 16 15 C 0.15 3.26 6.52 -3.71 -0.02 3.24 16 16 N -0.58 -14.45 2.93 -172.32 -0.51 -14.96 16 17 C -0.24 -6.50 9.58 -15.06 -0.14 -6.65 16 18 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 19 C 0.00 -0.06 4.92 -17.43 -0.09 -0.14 16 20 N -0.91 -25.70 11.20 55.49 0.62 -25.08 16 21 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.15 3.31 4.95 -3.71 -0.02 3.29 16 26 C 0.07 1.33 3.38 -26.61 -0.09 1.24 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 O -0.56 -9.58 12.09 -35.23 -0.43 -10.00 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.19 1.05 7.46 -52.48 -0.39 0.66 16 36 H 0.40 4.98 7.17 -40.82 -0.29 4.69 16 37 H 0.07 1.39 7.61 -51.93 -0.40 0.99 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.37 5.51 9.08 45.56 0.41 5.92 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -36.19 366.55 -5.75 -41.94 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.56 Total: 6.56 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 0.05 Total: 14.25 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.06 Total: -59.04 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.67 Total: -25.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.19 -5.75 -41.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090486317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.841 kcal (2) G-P(sol) polarization free energy of solvation -36.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds