Wall clock time and date at job start Fri Apr 10 2020 18:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35349 * 116.99695 * 2 1 4 4 C 1.38996 * 126.40802 * 93.91400 * 3 2 1 5 5 C 1.46918 * 126.49884 * 359.97387 * 4 3 2 6 6 O 1.21667 * 119.99610 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00151 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99942 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.45335 * 35.02859 * 8 7 5 10 10 C 1.53041 * 109.45833 * 275.06203 * 8 7 5 11 11 C 1.53197 * 109.31282 * 178.61402 * 10 8 7 12 12 N 1.46932 * 108.77267 * 54.63457 * 11 10 8 13 13 C 1.36937 * 120.62736 * 126.39062 * 12 11 10 14 14 H 1.08001 * 120.00422 * 208.02398 * 13 12 11 15 15 C 1.38816 * 119.99910 * 28.02379 * 13 12 11 16 16 N 1.31619 * 120.00322 * 14.33549 * 15 13 12 17 17 Si 1.86803 * 119.99700 * 194.33255 * 15 13 12 18 18 H 1.48497 * 109.46994 * 90.00271 * 17 15 13 19 19 H 1.48503 * 109.47023 * 209.99822 * 17 15 13 20 20 H 1.48498 * 109.47354 * 330.00223 * 17 15 13 21 21 C 1.46918 * 118.73977 * 306.39332 * 12 11 10 22 22 C 1.53047 * 109.46157 * 154.99455 * 8 7 5 23 23 H 1.09000 * 109.52115 * 61.41385 * 22 8 7 24 24 O 1.42895 * 109.49920 * 301.33849 * 22 8 7 25 25 C 1.41465 * 107.00419 * 180.23865 * 4 3 2 26 26 N 1.30322 * 108.13745 * 359.55728 * 25 4 3 27 27 N 1.34664 * 126.40084 * 273.88371 * 3 2 1 28 28 C 1.46500 * 125.74524 * 359.97438 * 27 3 2 29 29 H 1.09005 * 109.46743 * 184.92083 * 1 2 3 30 30 H 1.09000 * 109.47624 * 304.91925 * 1 2 3 31 31 H 1.08994 * 109.47525 * 64.92135 * 1 2 3 32 32 H 0.97005 * 119.99954 * 359.97438 * 7 5 4 33 33 H 1.08995 * 109.49588 * 298.56592 * 10 8 7 34 34 H 1.08998 * 109.49762 * 58.66889 * 10 8 7 35 35 H 1.08996 * 109.58569 * 174.42113 * 11 10 8 36 36 H 1.08997 * 109.58655 * 294.70972 * 11 10 8 37 37 H 0.96997 * 120.00292 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.58825 * 293.81485 * 21 12 11 39 39 H 1.09004 * 109.58622 * 173.39586 * 21 12 11 40 40 H 0.96692 * 114.00549 * 180.16001 * 24 22 8 41 41 H 1.08008 * 125.93130 * 179.73183 * 25 4 3 42 42 H 1.09004 * 109.46779 * 84.65793 * 28 27 3 43 43 H 1.08997 * 109.47097 * 204.65974 * 28 27 3 44 44 H 1.08996 * 109.47014 * 324.66555 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.4859 1.9064 1.1160 5 6 2.3748 1.4784 2.5171 6 8 1.8530 0.4133 2.7881 7 7 2.8510 2.2655 3.5020 8 6 2.7407 1.8384 4.8990 9 1 2.8580 0.7563 4.9581 10 6 1.3668 2.2330 5.4458 11 6 1.2420 1.7543 6.8956 12 7 2.3739 2.2847 7.6678 13 6 2.1613 2.9934 8.8201 14 1 2.8762 3.7390 9.1353 15 6 1.0267 2.7535 9.5832 16 7 0.3059 1.6733 9.3690 17 14 0.5232 3.9637 10.9141 18 1 -0.3851 4.9861 10.3354 19 1 -0.1784 3.2380 12.0033 20 1 1.7327 4.6290 11.4615 21 6 3.7381 2.0404 7.1802 22 6 3.8350 2.5158 5.7272 23 1 3.7041 3.5972 5.6887 24 8 5.1165 2.1715 5.1971 25 6 3.0580 3.1124 0.6476 26 7 2.9715 3.1243 -0.6527 27 7 2.3408 1.9514 -1.0814 28 6 2.0532 1.5938 -2.4727 29 1 -0.3633 -1.0239 0.0882 30 1 -0.3634 0.5882 0.8426 31 1 -0.3634 0.4356 -0.9307 32 1 3.2674 3.1146 3.2858 33 1 1.2586 3.3169 5.4099 34 1 0.5876 1.7688 4.8411 35 1 0.3068 2.1180 7.3213 36 1 1.2568 0.6647 6.9233 37 1 -0.4871 1.5058 9.9019 38 1 3.9590 0.9742 7.2314 39 1 4.4499 2.5929 7.7937 40 1 5.8588 2.5648 5.6757 41 1 3.4937 3.8874 1.2608 42 1 1.0325 1.8862 -2.7194 43 1 2.7491 2.1121 -3.1323 44 1 2.1638 0.5171 -2.6014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090758659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:59 Heat of formation + Delta-G solvation = -10.636669 kcal Electronic energy + Delta-G solvation = -28227.941109 eV Core-core repulsion = 24183.826364 eV Total energy + Delta-G solvation = -4044.114745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -41.71398 -39.33597 -38.30964 -37.66631 -35.35344 -34.16659 -33.62062 -31.87337 -30.36256 -29.73061 -28.55883 -27.53963 -26.98323 -25.09204 -23.02554 -22.23187 -21.76426 -21.05944 -20.03140 -19.49165 -18.36271 -17.17019 -16.74178 -16.62914 -16.48188 -16.01679 -15.40654 -14.92502 -14.89341 -14.73531 -14.31913 -14.02052 -13.92129 -13.80492 -13.41219 -13.17766 -13.04609 -12.93512 -12.67236 -12.21080 -12.15693 -11.96142 -11.53728 -11.49005 -11.06492 -10.88178 -10.63139 -10.44801 -10.27986 -10.19616 -9.92512 -9.72797 -9.69189 -9.64324 -9.35328 -8.86044 -8.60613 -8.36709 -6.73744 -5.81619 -3.27706 1.07975 1.87867 2.01896 3.26866 3.35714 3.42347 3.43879 3.54567 3.69859 4.18232 4.40749 4.57387 4.70919 4.73116 4.80722 4.95976 5.01555 5.05361 5.15645 5.35014 5.36459 5.38656 5.51243 5.57882 5.64082 5.82949 5.84949 6.04261 6.15267 6.20632 6.41091 6.53413 6.61916 6.73162 6.82545 6.99367 7.13202 7.25688 7.35544 7.67494 7.75321 7.91952 7.98508 8.41240 8.64620 9.16402 9.78172 10.34021 11.26351 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.021788 B = 0.002906 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.805129 B = 9631.364294 C =10168.952448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.296 6.296 3 C 0.317 3.683 4 C -0.288 4.288 5 C 0.591 3.409 6 O -0.541 6.541 7 N -0.712 5.712 8 C 0.166 3.834 9 H 0.088 0.912 10 C -0.146 4.146 11 C 0.170 3.830 12 N -0.589 5.589 13 C -0.257 4.257 14 H 0.067 0.933 15 C 0.004 3.996 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.121 3.879 22 C 0.080 3.920 23 H 0.056 0.944 24 O -0.570 6.570 25 C 0.092 3.908 26 N -0.281 5.281 27 N -0.373 5.373 28 C 0.094 3.906 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.393 0.607 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.023 0.977 37 H 0.255 0.745 38 H 0.029 0.971 39 H 0.059 0.941 40 H 0.373 0.627 41 H 0.195 0.805 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.165 2.087 -21.697 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.204 6.204 3 C 0.144 3.856 4 C -0.304 4.304 5 C 0.378 3.622 6 O -0.419 6.419 7 N -0.361 5.361 8 C 0.062 3.938 9 H 0.106 0.894 10 C -0.186 4.186 11 C 0.044 3.956 12 N -0.313 5.313 13 C -0.386 4.386 14 H 0.085 0.915 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.736 3.264 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.204 1.204 21 C -0.007 4.007 22 C 0.019 3.981 23 H 0.074 0.926 24 O -0.374 6.374 25 C -0.095 4.095 26 N -0.104 5.104 27 N -0.163 5.163 28 C -0.047 4.047 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.227 0.773 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.219 0.781 41 H 0.212 0.788 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.538 1.259 -22.979 23.153 hybrid contribution -0.093 0.984 1.576 1.861 sum 2.446 2.243 -21.403 21.659 Atomic orbital electron populations 1.23128 0.76659 1.04742 1.00923 1.86021 1.21374 1.20208 1.92841 1.19331 0.95212 0.84696 0.86347 1.20183 1.18012 0.98533 0.93672 1.16926 0.78257 0.83832 0.83200 1.90806 1.44610 1.22585 1.83857 1.45812 1.61050 1.22752 1.06503 1.20972 0.94456 1.00323 0.78050 0.89436 1.22607 0.94639 1.01061 1.00328 1.20875 0.93364 0.95861 0.85510 1.44044 0.98714 1.63287 1.25238 1.19189 1.07377 1.12960 0.99068 0.91523 1.25096 0.99957 0.96585 0.97890 1.70002 1.18232 1.24415 1.41890 0.86237 0.78463 0.80488 0.81219 1.21385 1.21689 1.20434 1.21533 0.89546 0.98374 0.91239 1.22775 0.82188 0.97840 0.95293 0.92625 1.86498 1.15632 1.76464 1.58822 1.23939 0.97052 0.96659 0.91851 1.77200 1.18850 1.00922 1.13445 1.48941 1.45923 1.14661 1.06790 1.21971 1.02704 1.02406 0.77580 0.87490 0.91985 0.93695 0.77329 0.92427 0.91992 0.88570 0.95893 0.93456 0.95301 0.92227 0.78105 0.78816 0.90476 0.88446 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.13 101.05 1.12 1.51 16 2 O -0.30 -3.91 9.83 -24.99 -0.25 -4.16 16 3 C 0.32 4.25 6.99 -16.03 -0.11 4.14 16 4 C -0.29 -4.12 6.15 -104.87 -0.64 -4.77 16 5 C 0.59 10.09 7.76 -12.75 -0.10 9.99 16 6 O -0.54 -11.17 16.04 -2.03 -0.03 -11.20 16 7 N -0.71 -11.15 4.91 -55.00 -0.27 -11.42 16 8 C 0.17 3.06 2.12 -67.89 -0.14 2.91 16 9 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 10 C -0.15 -2.91 5.65 -26.61 -0.15 -3.06 16 11 C 0.17 4.09 5.30 -3.70 -0.02 4.07 16 12 N -0.59 -14.44 3.00 -172.32 -0.52 -14.96 16 13 C -0.26 -6.84 9.60 -15.06 -0.14 -6.99 16 14 H 0.07 1.73 7.87 -52.49 -0.41 1.31 16 15 C 0.00 0.10 4.99 -17.43 -0.09 0.01 16 16 N -0.90 -25.89 11.02 55.49 0.61 -25.27 16 17 Si 0.91 21.29 29.58 -169.99 -5.03 16.26 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.12 2.46 6.14 -3.72 -0.02 2.44 16 22 C 0.08 1.37 3.14 -26.61 -0.08 1.29 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 O -0.57 -8.64 13.16 -35.23 -0.46 -9.11 16 25 C 0.09 1.06 11.50 -16.96 -0.20 0.87 16 26 N -0.28 -3.36 12.48 30.88 0.39 -2.98 16 27 N -0.37 -4.16 3.99 -67.67 -0.27 -4.43 16 28 C 0.09 0.60 11.38 59.85 0.68 1.28 16 29 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.39 5.00 7.55 -40.82 -0.31 4.69 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 40 H 0.37 4.04 9.08 45.56 0.41 4.45 16 41 H 0.20 1.56 7.50 -52.48 -0.39 1.17 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -35.22 368.49 -5.77 -40.99 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.60 Total: 7.02 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 0.10 Total: 13.70 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.06 Total: -59.06 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.74 Total: -24.47 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.22 -5.77 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090758659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.354 kcal (2) G-P(sol) polarization free energy of solvation -35.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds