Wall clock time and date at job start Fri Apr 10 2020 18:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47285 * 2 1 4 4 N 1.28712 * 126.03832 * 265.51971 * 3 2 1 5 5 N 1.28514 * 110.64127 * 179.88155 * 4 3 2 6 6 C 1.33325 * 109.43614 * 0.38833 * 5 4 3 7 7 C 1.50697 * 126.81055 * 179.76969 * 6 5 4 8 8 C 1.36999 * 106.37151 * 359.77172 * 6 5 4 9 9 C 1.47242 * 127.18757 * 179.97438 * 8 6 5 10 10 O 1.21619 * 119.99521 * 86.77751 * 9 8 6 11 11 N 1.34770 * 119.99793 * 266.78005 * 9 8 6 12 12 C 1.46500 * 119.99608 * 185.30307 * 11 9 8 13 13 C 1.52999 * 109.47183 * 180.02562 * 12 11 9 14 14 N 1.46895 * 109.47506 * 180.02562 * 13 12 11 15 15 C 1.46895 * 111.00494 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47786 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99640 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00391 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99856 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99637 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99866 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99922 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00004 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46856 * 89.99984 * 23 21 19 25 25 H 1.48500 * 109.46956 * 209.99909 * 23 21 19 26 26 H 1.48490 * 109.47141 * 329.99933 * 23 21 19 27 27 H 1.08998 * 109.47527 * 300.00321 * 1 2 3 28 28 H 1.09004 * 109.47030 * 60.00102 * 1 2 3 29 29 H 1.08995 * 109.47400 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47527 * 239.99679 * 2 1 3 31 31 H 1.09004 * 109.47030 * 119.99898 * 2 1 3 32 32 H 1.08994 * 109.47202 * 270.00450 * 7 6 5 33 33 H 1.09004 * 109.47344 * 30.00173 * 7 6 5 34 34 H 1.09004 * 109.47023 * 149.99821 * 7 6 5 35 35 H 0.96998 * 120.00179 * 5.30360 * 11 9 8 36 36 H 1.09000 * 109.47384 * 300.00209 * 12 11 9 37 37 H 1.09001 * 109.47578 * 59.99861 * 12 11 9 38 38 H 1.09000 * 109.47067 * 300.00325 * 13 12 11 39 39 H 1.09007 * 109.47016 * 59.99889 * 13 12 11 40 40 H 1.00900 * 111.00157 * 56.04299 * 14 13 12 41 41 H 1.08998 * 109.47206 * 300.00154 * 15 14 13 42 42 H 1.09005 * 109.46941 * 60.00175 * 15 14 13 43 43 H 0.96994 * 119.99718 * 0.02562 * 18 16 15 44 44 H 0.97006 * 119.99816 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3474 2.0680 -1.0376 5 7 2.7330 3.2459 -0.6976 6 6 2.6727 3.3668 0.6287 7 6 3.0396 4.5811 1.4423 8 6 2.2112 2.1682 1.1052 9 6 1.9726 1.8017 2.5112 10 8 0.9033 2.0546 3.0324 11 7 2.9393 1.1862 3.2205 12 6 2.6639 0.7175 4.5809 13 6 3.9194 0.0607 5.1580 14 7 3.6432 -0.4099 6.5218 15 6 4.8288 -1.0482 7.1089 16 6 4.5080 -1.5165 8.5049 17 8 3.4007 -1.3357 8.9657 18 7 5.4518 -2.1351 9.2417 19 6 5.1597 -2.5615 10.5116 20 1 4.1735 -2.4013 10.9215 21 6 6.1329 -3.1989 11.2715 22 7 7.3333 -3.3924 10.7731 23 14 5.7352 -3.7793 13.0019 24 1 5.2175 -5.1702 12.9507 25 1 6.9655 -3.7392 13.8324 26 1 4.7063 -2.8899 13.5981 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0941 4.5318 1.7135 33 1 2.8573 5.4809 0.8546 34 1 2.4325 4.6091 2.3472 35 1 3.8174 1.0536 2.8302 36 1 2.3770 1.5634 5.2055 37 1 1.8515 -0.0088 4.5575 38 1 4.2068 -0.7852 4.5334 39 1 4.7316 0.7874 5.1815 40 1 2.8520 -1.0359 6.5350 41 1 5.1222 -1.9015 6.4975 42 1 5.6474 -0.3294 7.1463 43 1 6.3376 -2.2786 8.8736 44 1 8.0126 -3.8377 11.3035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129283980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:16 Heat of formation + Delta-G solvation = 23.131789 kcal Electronic energy + Delta-G solvation = -26247.227472 eV Core-core repulsion = 22236.869788 eV Total energy + Delta-G solvation = -4010.357684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.69982 -39.96359 -38.39375 -36.49499 -36.15030 -34.58533 -33.84519 -33.12802 -31.43857 -31.27911 -29.67440 -28.21607 -26.25774 -25.22935 -24.26803 -23.29334 -22.24842 -21.68844 -20.77123 -19.36488 -18.52887 -17.95995 -17.14839 -16.99249 -16.29119 -16.24425 -15.98523 -15.46975 -15.14360 -14.67227 -14.58442 -14.23071 -14.04879 -14.02777 -13.78273 -13.51314 -13.30279 -13.20275 -12.99413 -12.66686 -12.53189 -12.32862 -12.09797 -12.04645 -11.64973 -11.55607 -11.54822 -11.35526 -11.07868 -10.69799 -10.51140 -10.43021 -10.26731 -9.59482 -9.58888 -9.56253 -8.59073 -8.22822 -8.02272 -6.47009 -3.88028 0.82656 1.41698 1.99908 2.09416 2.57551 3.14305 3.23601 3.29615 3.74808 3.83416 3.92436 4.06503 4.16934 4.20566 4.30324 4.44765 4.47958 4.68602 4.81482 4.85241 4.95830 5.07542 5.12185 5.19052 5.21776 5.22953 5.32833 5.46338 5.49607 5.60658 5.61867 5.74069 5.78975 5.83818 5.87130 5.97349 6.17192 6.84256 6.99974 7.44776 7.50486 7.54735 7.98522 8.00374 8.54899 9.12366 9.47795 9.98784 10.70562 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.027197 B = 0.001768 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.284439 B =15829.302909 C =16081.698303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.266 5.266 4 N -0.062 5.062 5 N -0.268 5.268 6 C 0.030 3.970 7 C -0.075 4.075 8 C -0.067 4.067 9 C 0.597 3.403 10 O -0.508 6.508 11 N -0.713 5.713 12 C 0.118 3.882 13 C 0.049 3.951 14 N -0.664 5.664 15 C 0.052 3.948 16 C 0.439 3.561 17 O -0.582 6.582 18 N -0.562 5.562 19 C -0.300 4.300 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.404 0.596 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.080 0.920 40 H 0.353 0.647 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.595 7.194 -22.762 24.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.014 4.014 3 N -0.064 5.064 4 N -0.041 5.041 5 N -0.133 5.133 6 C -0.110 4.110 7 C -0.134 4.134 8 C -0.201 4.201 9 C 0.378 3.622 10 O -0.380 6.380 11 N -0.365 5.365 12 C -0.005 4.005 13 C -0.081 4.081 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.224 3.776 17 O -0.467 6.467 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.239 0.761 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.098 0.902 40 H 0.172 0.828 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.226 0.774 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.740 7.941 -23.195 25.427 hybrid contribution 0.848 -1.566 0.988 2.037 sum -5.892 6.375 -22.207 23.844 Atomic orbital electron populations 1.22203 0.92290 1.04414 1.04230 1.22276 0.97041 0.75896 1.06194 1.47861 1.41530 1.13372 1.03630 1.78202 1.14616 0.99690 1.11574 1.74857 1.17454 1.09219 1.11792 1.22208 1.02045 0.95537 0.91198 1.20218 1.02451 0.92541 0.98186 1.21791 1.13493 0.94549 0.90270 1.16719 0.84277 0.78046 0.83188 1.90902 1.24948 1.51733 1.70433 1.45890 1.14992 1.59008 1.16626 1.21431 0.97966 1.00383 0.80706 1.22078 0.96961 0.99038 0.90055 1.59925 1.07200 1.45565 1.17066 1.21673 0.93300 0.97773 0.95271 1.19751 0.86358 0.84213 0.87275 1.90537 1.22810 1.60444 1.72865 1.41856 1.12755 1.50967 1.14295 1.19711 0.99519 1.34082 0.89654 0.87855 1.25276 0.94898 0.97419 1.00354 1.69611 1.03271 1.42931 1.38437 0.85843 0.77880 0.79079 0.81417 1.20406 1.20893 1.19354 0.90926 0.91069 0.89202 0.86644 0.87825 0.89861 0.89666 0.90226 0.76130 0.89390 0.90874 0.94868 0.90195 0.82783 0.93683 0.89387 0.77449 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 37.16 0.38 -0.55 16 2 C 0.11 0.57 6.90 -4.04 -0.03 0.54 16 3 N -0.27 -2.38 3.39 -57.37 -0.19 -2.57 16 4 N -0.06 -0.69 13.14 60.35 0.79 0.10 16 5 N -0.27 -3.19 12.35 33.51 0.41 -2.78 16 6 C 0.03 0.31 7.30 -82.39 -0.60 -0.30 16 7 C -0.08 -0.55 10.28 36.00 0.37 -0.18 16 8 C -0.07 -0.65 6.74 -82.33 -0.55 -1.20 16 9 C 0.60 5.95 6.99 -12.60 -0.09 5.86 16 10 O -0.51 -6.91 17.12 5.26 0.09 -6.82 16 11 N -0.71 -5.42 5.55 -61.44 -0.34 -5.77 16 12 C 0.12 1.09 5.94 -4.04 -0.02 1.06 16 13 C 0.05 0.47 5.80 -3.83 -0.02 0.44 16 14 N -0.66 -9.48 6.13 -115.06 -0.70 -10.18 16 15 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 16 C 0.44 9.92 7.82 -10.99 -0.09 9.84 16 17 O -0.58 -15.35 15.78 5.55 0.09 -15.26 16 18 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16 19 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -23.99 13.05 55.50 0.72 -23.26 16 23 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.41 7.99 -51.93 -0.41 0.00 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.59 8.02 -51.93 -0.42 0.17 16 35 H 0.40 2.17 8.46 -40.82 -0.35 1.82 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 40 H 0.35 5.20 8.43 -39.29 -0.33 4.87 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.39 9.14 7.90 -40.82 -0.32 8.81 16 44 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -34.82 385.99 -5.74 -40.56 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.41 Total: 9.91 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -0.92 Total: 8.47 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.63 Total: -58.30 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.18 Total: -22.09 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.82 -5.74 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129283980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.689 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds