Wall clock time and date at job start Fri Apr 10 2020 18:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47285 * 2 1 4 4 N 1.28712 * 126.03832 * 265.51971 * 3 2 1 5 5 N 1.28514 * 110.64127 * 179.88155 * 4 3 2 6 6 C 1.33325 * 109.43614 * 0.38833 * 5 4 3 7 7 C 1.50697 * 126.81055 * 179.76969 * 6 5 4 8 8 C 1.36999 * 106.37151 * 359.77172 * 6 5 4 9 9 C 1.47242 * 127.18757 * 179.97438 * 8 6 5 10 10 O 1.21619 * 119.99521 * 86.77751 * 9 8 6 11 11 N 1.34770 * 119.99793 * 266.78005 * 9 8 6 12 12 C 1.46500 * 119.99608 * 185.30307 * 11 9 8 13 13 C 1.52999 * 109.47183 * 180.02562 * 12 11 9 14 14 N 1.46895 * 109.47506 * 180.02562 * 13 12 11 15 15 C 1.46895 * 111.00494 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47786 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99640 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00391 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99856 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99637 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99866 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99922 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00004 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46856 * 89.99984 * 23 21 19 25 25 H 1.48500 * 109.46956 * 209.99909 * 23 21 19 26 26 H 1.48490 * 109.47141 * 329.99933 * 23 21 19 27 27 H 1.08998 * 109.47527 * 300.00321 * 1 2 3 28 28 H 1.09004 * 109.47030 * 60.00102 * 1 2 3 29 29 H 1.08995 * 109.47400 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47527 * 239.99679 * 2 1 3 31 31 H 1.09004 * 109.47030 * 119.99898 * 2 1 3 32 32 H 1.08994 * 109.47202 * 270.00450 * 7 6 5 33 33 H 1.09004 * 109.47344 * 30.00173 * 7 6 5 34 34 H 1.09004 * 109.47023 * 149.99821 * 7 6 5 35 35 H 0.96998 * 120.00179 * 5.30360 * 11 9 8 36 36 H 1.09000 * 109.47384 * 300.00209 * 12 11 9 37 37 H 1.09001 * 109.47578 * 59.99861 * 12 11 9 38 38 H 1.09000 * 109.47067 * 300.00325 * 13 12 11 39 39 H 1.09007 * 109.47016 * 59.99889 * 13 12 11 40 40 H 1.00900 * 111.00157 * 56.04299 * 14 13 12 41 41 H 1.08998 * 109.47206 * 300.00154 * 15 14 13 42 42 H 1.09005 * 109.46941 * 60.00175 * 15 14 13 43 43 H 0.96994 * 119.99718 * 0.02562 * 18 16 15 44 44 H 0.97006 * 119.99816 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3474 2.0680 -1.0376 5 7 2.7330 3.2459 -0.6976 6 6 2.6727 3.3668 0.6287 7 6 3.0396 4.5811 1.4423 8 6 2.2112 2.1682 1.1052 9 6 1.9726 1.8017 2.5112 10 8 0.9033 2.0546 3.0324 11 7 2.9393 1.1862 3.2205 12 6 2.6639 0.7175 4.5809 13 6 3.9194 0.0607 5.1580 14 7 3.6432 -0.4099 6.5218 15 6 4.8288 -1.0482 7.1089 16 6 4.5080 -1.5165 8.5049 17 8 3.4007 -1.3357 8.9657 18 7 5.4518 -2.1351 9.2417 19 6 5.1597 -2.5615 10.5116 20 1 4.1735 -2.4013 10.9215 21 6 6.1329 -3.1989 11.2715 22 7 7.3333 -3.3924 10.7731 23 14 5.7352 -3.7793 13.0019 24 1 5.2175 -5.1702 12.9507 25 1 6.9655 -3.7392 13.8324 26 1 4.7063 -2.8899 13.5981 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0941 4.5318 1.7135 33 1 2.8573 5.4809 0.8546 34 1 2.4325 4.6091 2.3472 35 1 3.8174 1.0536 2.8302 36 1 2.3770 1.5634 5.2055 37 1 1.8515 -0.0088 4.5575 38 1 4.2068 -0.7852 4.5334 39 1 4.7316 0.7874 5.1815 40 1 2.8520 -1.0359 6.5350 41 1 5.1222 -1.9015 6.4975 42 1 5.6474 -0.3294 7.1463 43 1 6.3376 -2.2786 8.8736 44 1 8.0126 -3.8377 11.3035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129283980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:15 Heat of formation + Delta-G solvation = -6.246483 kcal Electronic energy + Delta-G solvation = -26248.501410 eV Core-core repulsion = 22236.869788 eV Total energy + Delta-G solvation = -4011.631621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.43956 -40.80077 -40.13055 -37.53597 -36.75222 -36.01692 -35.33681 -33.84415 -33.25534 -32.03877 -30.65830 -28.95806 -27.68610 -26.04970 -25.55522 -24.20858 -23.05524 -22.35321 -21.52494 -21.08899 -19.91447 -19.25926 -17.96402 -17.79050 -17.57195 -17.19216 -17.00311 -16.62201 -16.30980 -15.93688 -15.65596 -15.48172 -15.17312 -14.90524 -14.68112 -14.45969 -14.44342 -13.99512 -13.73472 -13.54322 -13.51614 -13.32078 -13.18343 -13.04242 -12.93709 -12.61351 -12.59020 -12.44548 -12.40220 -12.12096 -12.05344 -11.53953 -11.49900 -11.23097 -10.36725 -10.35405 -10.32735 -10.00576 -9.36570 -8.46256 -5.94590 0.09241 0.72256 1.22110 1.35887 1.38615 1.43025 1.55280 1.83239 2.06677 2.30385 2.94743 3.16979 3.21516 3.38558 3.52725 3.61384 3.77316 3.79470 3.87395 4.09262 4.11974 4.22763 4.33216 4.46962 4.52058 4.55846 4.56830 4.63270 4.69961 4.73985 4.85203 4.89866 4.93509 5.03805 5.10823 5.19890 5.32688 5.42048 5.84812 6.07338 6.18438 6.35409 6.61032 6.82239 7.13774 7.21798 7.57641 8.13096 8.70910 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.027197 B = 0.001768 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.284439 B =15829.302909 C =16081.698303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 N -0.256 5.256 4 N -0.078 5.078 5 N -0.297 5.297 6 C 0.023 3.977 7 C -0.075 4.075 8 C -0.073 4.073 9 C 0.607 3.393 10 O -0.548 6.548 11 N -0.692 5.692 12 C 0.127 3.873 13 C 0.056 3.944 14 N -0.685 5.685 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.333 4.333 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.274 1.274 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.115 0.885 30 H 0.139 0.861 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.419 0.581 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.347 0.653 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.397 0.603 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 6.485 -23.519 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.023 4.023 3 N -0.055 5.055 4 N -0.057 5.057 5 N -0.161 5.161 6 C -0.117 4.117 7 C -0.133 4.133 8 C -0.208 4.208 9 C 0.388 3.612 10 O -0.424 6.424 11 N -0.344 5.344 12 C 0.003 3.997 13 C -0.073 4.073 14 N -0.318 5.318 15 C -0.064 4.064 16 C 0.223 3.777 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.199 1.199 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.157 0.843 31 H 0.139 0.861 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.257 0.743 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.166 0.834 41 H 0.092 0.908 42 H 0.126 0.874 43 H 0.231 0.769 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.560 7.220 -24.003 25.674 hybrid contribution 0.449 -1.345 1.171 1.839 sum -5.110 5.876 -22.832 24.123 Atomic orbital electron populations 1.22175 0.92367 1.05561 1.02535 1.22695 0.96949 0.74429 1.08247 1.48168 1.40255 1.14172 1.02890 1.78130 1.15325 0.99925 1.12281 1.74826 1.18684 1.09852 1.12737 1.22671 1.01672 0.96438 0.90940 1.20320 1.03532 0.91758 0.97719 1.21767 1.13897 0.94813 0.90287 1.16663 0.83860 0.77527 0.83145 1.90892 1.26684 1.53617 1.71169 1.45655 1.15227 1.57734 1.15801 1.21241 0.97998 0.99573 0.80900 1.22080 0.97172 1.00082 0.87933 1.59875 1.06430 1.45362 1.20114 1.21518 0.94403 0.99329 0.91138 1.20962 0.85159 0.82233 0.89375 1.90507 1.24568 1.61554 1.74509 1.41928 1.13442 1.51759 1.13915 1.19650 0.99033 1.36083 0.91526 0.90389 1.26011 0.94641 0.96980 1.03640 1.69663 1.03701 1.42991 1.39653 0.84950 0.77848 0.78575 0.77115 1.19622 1.19622 1.19907 0.93380 0.91885 0.86646 0.84327 0.86075 0.87973 0.89105 0.90432 0.74340 0.91293 0.91097 0.92225 0.88834 0.83377 0.90837 0.87351 0.76863 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.24 71.98 0.74 -0.88 16 2 C 0.10 0.84 6.90 86.38 0.60 1.43 16 3 N -0.26 -4.30 3.39 -335.42 -1.14 -5.44 16 4 N -0.08 -1.68 13.14 37.02 0.49 -1.20 16 5 N -0.30 -6.95 12.35 -47.89 -0.59 -7.54 16 6 C 0.02 0.46 7.30 42.04 0.31 0.77 16 7 C -0.07 -1.03 10.28 71.23 0.73 -0.29 16 8 C -0.07 -1.35 6.74 40.41 0.27 -1.07 16 9 C 0.61 11.44 6.99 86.61 0.61 12.04 16 10 O -0.55 -14.87 17.12 -4.09 -0.07 -14.94 16 11 N -0.69 -9.02 5.55 -466.56 -2.59 -11.61 16 12 C 0.13 2.09 5.94 86.38 0.51 2.60 16 13 C 0.06 0.89 5.80 86.30 0.50 1.39 16 14 N -0.68 -18.16 6.13 -517.95 -3.17 -21.33 16 15 C 0.07 2.03 6.17 85.56 0.53 2.56 16 16 C 0.44 19.55 7.82 87.66 0.69 20.24 16 17 O -0.62 -33.45 15.78 -3.07 -0.05 -33.50 16 18 N -0.57 -28.19 5.29 -306.99 -1.62 -29.81 16 19 C -0.33 -18.48 9.68 84.04 0.81 -17.67 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 22 N -0.92 -48.31 13.05 21.66 0.28 -48.03 16 23 Si 0.99 42.10 29.55 68.60 2.03 44.12 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.12 0.65 7.99 -2.38 -0.02 0.63 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.08 1.09 8.02 -2.38 -0.02 1.07 16 35 H 0.42 3.17 8.46 -92.71 -0.78 2.39 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.35 9.82 8.43 -89.69 -0.76 9.06 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 42 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 43 H 0.40 18.36 7.90 -92.71 -0.73 17.62 16 44 H 0.28 13.66 8.31 -92.70 -0.77 12.89 16 Total: -1.00 -77.19 385.99 -0.89 -78.08 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -1.21 Total: 30.28 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 6.76 Total: 20.91 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -8.35 Total: -124.95 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.12 Total: -48.44 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -77.19 -0.89 -78.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129283980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.835 kcal (2) G-P(sol) polarization free energy of solvation -77.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds