Wall clock time and date at job start Fri Apr 10 2020 18:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28597 * 124.61755 * 2 1 4 4 C 1.31384 * 108.71793 * 179.97438 * 3 2 1 5 5 C 1.39673 * 105.89841 * 359.97438 * 4 3 2 6 6 C 1.50696 * 127.04861 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47473 * 124.99911 * 6 5 4 8 8 C 1.50695 * 109.47160 * 179.97438 * 7 6 5 9 9 O 1.21287 * 120.00347 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99804 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00069 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47359 * 180.02562 * 11 10 8 13 13 N 1.46900 * 109.47070 * 180.02562 * 12 11 10 14 14 C 1.46908 * 110.99702 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.46776 * 179.97438 * 14 13 12 16 16 O 1.21293 * 120.00542 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99835 * 179.97438 * 15 14 13 18 18 C 1.37099 * 120.00074 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99543 * 0.02562 * 18 17 15 20 20 C 1.38945 * 119.99891 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00070 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00138 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46767 * 90.00335 * 22 20 18 24 24 H 1.48496 * 109.46969 * 209.99721 * 22 20 18 25 25 H 1.48493 * 109.46805 * 330.00147 * 22 20 18 26 26 N 1.28596 * 124.61789 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47019 * 90.02793 * 1 2 3 28 28 H 1.08995 * 109.46959 * 210.03428 * 1 2 3 29 29 H 1.09004 * 109.46895 * 330.02913 * 1 2 3 30 30 H 1.07994 * 127.04821 * 180.02562 * 4 3 2 31 31 H 1.09009 * 109.47336 * 244.99627 * 6 5 4 32 32 H 1.09002 * 109.47615 * 4.99478 * 6 5 4 33 33 H 1.08999 * 109.46419 * 299.99649 * 7 6 5 34 34 H 1.08995 * 109.47234 * 59.99596 * 7 6 5 35 35 H 0.97001 * 120.00029 * 0.02562 * 10 8 7 36 36 H 1.09003 * 109.47010 * 300.00607 * 11 10 8 37 37 H 1.09003 * 109.46645 * 60.00192 * 11 10 8 38 38 H 1.08994 * 109.47139 * 300.00217 * 12 11 10 39 39 H 1.09002 * 109.46839 * 59.99704 * 12 11 10 40 40 H 1.00895 * 110.99812 * 56.04626 * 13 12 11 41 41 H 1.09003 * 109.46902 * 300.00030 * 14 13 12 42 42 H 1.09003 * 109.47166 * 59.99844 * 14 13 12 43 43 H 0.97002 * 120.00127 * 0.02562 * 17 15 14 44 44 H 0.97005 * 120.00576 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4592 0.6984 0.0006 5 6 3.4591 -0.6983 0.0015 6 6 4.6619 -1.6063 0.0019 7 6 4.5707 -2.5732 1.1842 8 6 5.7731 -3.4815 1.1842 9 8 6.6195 -3.3672 0.3230 10 7 5.9080 -4.4209 2.1411 11 6 7.0767 -5.3044 2.1408 12 6 6.9856 -6.2711 3.3232 13 7 8.1578 -7.1565 3.3231 14 6 8.1040 -8.1011 4.4470 15 6 9.3196 -8.9911 4.4136 16 8 10.1490 -8.8526 3.5395 17 7 9.4853 -9.9411 5.3552 18 6 10.5910 -10.7512 5.3246 19 1 11.3294 -10.6277 4.5462 20 6 10.7615 -11.7309 6.2950 21 7 11.8210 -12.5077 6.2654 22 14 9.4845 -11.9438 7.6418 23 1 8.4532 -12.9151 7.1968 24 1 10.1431 -12.4503 8.8726 25 1 8.8425 -10.6355 7.9264 26 7 2.1956 -1.0583 0.0005 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8896 0.5143 29 1 -0.3633 0.8903 0.5134 30 1 4.3211 1.3491 0.0011 31 1 4.6900 -2.1726 -0.9291 32 1 5.5687 -1.0081 0.0908 33 1 4.5427 -2.0069 2.1151 34 1 3.6639 -3.1713 1.0953 35 1 5.2310 -4.5126 2.8297 36 1 7.1037 -5.8709 1.2099 37 1 7.9840 -4.7066 2.2288 38 1 6.9584 -5.7049 4.2541 39 1 6.0783 -6.8687 3.2347 40 1 9.0140 -6.6229 3.3395 41 1 8.0839 -7.5479 5.3859 42 1 7.2047 -8.7117 4.3657 43 1 8.8219 -10.0522 6.0541 44 1 11.9403 -13.1914 6.9431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133914142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:30 Heat of formation + Delta-G solvation = 38.986557 kcal Electronic energy + Delta-G solvation = -25106.290304 eV Core-core repulsion = 21096.620135 eV Total energy + Delta-G solvation = -4009.670169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.97467 -39.95599 -38.52144 -36.48265 -35.28979 -34.41834 -33.81201 -33.37432 -32.10300 -31.67757 -29.71293 -28.13132 -26.34579 -24.95933 -23.58950 -22.77953 -22.18094 -21.21912 -20.35945 -19.41367 -18.39821 -17.87479 -17.38068 -17.10113 -16.36905 -16.19017 -15.96364 -15.66487 -15.22627 -14.96339 -14.61196 -14.39285 -14.09017 -13.80850 -13.75876 -13.46225 -13.42263 -13.18305 -13.03730 -12.56419 -12.52239 -12.28273 -12.07290 -11.90159 -11.59460 -11.50210 -11.37821 -11.20917 -11.16399 -10.66184 -10.61166 -10.12533 -9.98501 -9.58734 -9.54890 -9.28294 -8.64071 -8.25217 -8.18517 -6.31924 -3.83594 1.36838 1.88034 1.97880 2.42340 2.85768 3.00743 3.05618 3.13919 3.62851 3.71823 4.08273 4.12451 4.29361 4.39897 4.45939 4.52955 4.70273 4.72464 4.77793 4.80198 4.85794 4.97515 5.03635 5.19646 5.21437 5.31665 5.37373 5.55176 5.60327 5.71635 5.74408 5.77949 5.84178 5.85860 5.92282 6.17946 6.24114 6.96426 7.23200 7.47024 7.56787 7.89233 7.98790 8.13392 8.58407 8.93939 9.41091 9.80943 10.81165 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.036008 B = 0.001401 C = 0.001361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.413449 B =19982.323765 C =20575.623415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.161 5.161 3 N -0.291 5.291 4 C -0.021 4.021 5 C 0.005 3.995 6 C -0.013 4.013 7 C -0.134 4.134 8 C 0.513 3.487 9 O -0.537 6.537 10 N -0.730 5.730 11 C 0.119 3.881 12 C 0.050 3.950 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.449 3.551 16 O -0.563 6.563 17 N -0.590 5.590 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 N -0.287 5.287 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.198 0.802 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.400 0.600 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.354 0.646 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.529 25.664 -6.504 36.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.062 5.062 3 N -0.133 5.133 4 C -0.203 4.203 5 C -0.158 4.158 6 C -0.053 4.053 7 C -0.174 4.174 8 C 0.299 3.701 9 O -0.414 6.414 10 N -0.383 5.383 11 C -0.005 4.005 12 C -0.081 4.081 13 N -0.299 5.299 14 C -0.083 4.083 15 C 0.234 3.766 16 O -0.445 6.445 17 N -0.229 5.229 18 C -0.435 4.435 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 N -0.129 5.129 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.215 0.785 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.234 0.766 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.174 0.826 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.203 0.797 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.900 25.220 -8.082 37.042 hybrid contribution -0.258 0.186 2.366 2.387 sum -26.158 25.406 -5.716 36.910 Atomic orbital electron populations 1.22126 0.70231 1.05856 1.04978 1.47919 1.08892 0.99363 1.49991 1.74060 1.04033 1.16110 1.19049 1.24715 0.94470 0.94741 1.06415 1.23213 0.92569 0.94241 1.05778 1.19630 0.91795 0.94857 0.99044 1.21604 0.97363 0.97714 1.00758 1.20607 0.87680 0.80734 0.81057 1.90744 1.43353 1.70341 1.36934 1.45935 1.25698 1.35843 1.30782 1.21285 0.87990 0.91402 0.99815 1.22082 0.95681 0.94179 0.96114 1.59911 1.04695 1.20078 1.45207 1.21702 0.99160 0.95327 0.92099 1.19674 0.88456 0.83999 0.84442 1.90579 1.45246 1.71592 1.37058 1.42197 1.22657 1.32020 1.26071 1.19445 0.99659 1.10728 1.13641 0.86239 1.25036 0.96937 0.96225 0.97907 1.69621 1.26922 1.20244 1.35273 0.86665 0.81703 0.78655 0.82300 1.19595 1.20186 1.19566 1.73995 1.03625 1.15649 1.19654 0.89271 0.87884 0.87952 0.78475 0.89066 0.88628 0.88811 0.88266 0.76639 0.90104 0.91262 0.94928 0.90459 0.82603 0.93612 0.89340 0.79693 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.31 11.57 59.85 0.69 1.00 16 2 N -0.16 -1.24 4.35 -16.64 -0.07 -1.32 16 3 N -0.29 -2.53 12.05 30.67 0.37 -2.16 16 4 C -0.02 -0.16 12.15 -17.21 -0.21 -0.37 16 5 C 0.00 0.04 6.61 -82.25 -0.54 -0.51 16 6 C -0.01 -0.10 5.10 -27.88 -0.14 -0.24 16 7 C -0.13 -0.86 5.68 -27.88 -0.16 -1.02 16 8 C 0.51 4.89 7.83 -10.99 -0.09 4.80 16 9 O -0.54 -7.37 15.98 5.55 0.09 -7.28 16 10 N -0.73 -5.96 5.56 -60.29 -0.33 -6.30 16 11 C 0.12 1.25 5.93 -4.04 -0.02 1.23 16 12 C 0.05 0.51 5.80 -3.83 -0.02 0.49 16 13 N -0.67 -9.85 6.12 -115.06 -0.70 -10.55 16 14 C 0.05 0.79 6.17 -4.97 -0.03 0.76 16 15 C 0.45 10.07 7.82 -10.99 -0.09 9.98 16 16 O -0.56 -15.11 15.78 5.55 0.09 -15.02 16 17 N -0.59 -13.91 5.09 -10.96 -0.06 -13.96 16 18 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 19 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 22 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 26 N -0.29 -2.52 12.04 33.71 0.41 -2.12 16 27 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.20 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.09 0.74 8.10 -51.92 -0.42 0.32 16 32 H 0.10 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.40 2.07 8.47 -40.82 -0.35 1.73 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.35 5.47 8.43 -39.29 -0.33 5.14 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -38.16 381.90 -5.64 -43.80 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.38 Total: 11.22 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -0.86 Total: 8.39 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.38 Total: -61.30 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.18 Total: -22.30 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.16 -5.64 -43.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133914142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.789 kcal (2) G-P(sol) polarization free energy of solvation -38.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds