Wall clock time and date at job start Fri Apr 10 2020 18:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28597 * 124.61755 * 2 1 4 4 C 1.31384 * 108.71793 * 179.97438 * 3 2 1 5 5 C 1.39673 * 105.89841 * 359.97438 * 4 3 2 6 6 C 1.50696 * 127.04861 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47473 * 124.99911 * 6 5 4 8 8 C 1.50695 * 109.47160 * 179.97438 * 7 6 5 9 9 O 1.21287 * 120.00347 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99804 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00069 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47359 * 180.02562 * 11 10 8 13 13 N 1.46900 * 109.47070 * 180.02562 * 12 11 10 14 14 C 1.46908 * 110.99702 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.46776 * 179.97438 * 14 13 12 16 16 O 1.21293 * 120.00542 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99835 * 179.97438 * 15 14 13 18 18 C 1.37099 * 120.00074 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99543 * 0.02562 * 18 17 15 20 20 C 1.38945 * 119.99891 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00070 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00138 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46767 * 90.00335 * 22 20 18 24 24 H 1.48496 * 109.46969 * 209.99721 * 22 20 18 25 25 H 1.48493 * 109.46805 * 330.00147 * 22 20 18 26 26 N 1.28596 * 124.61789 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47019 * 90.02793 * 1 2 3 28 28 H 1.08995 * 109.46959 * 210.03428 * 1 2 3 29 29 H 1.09004 * 109.46895 * 330.02913 * 1 2 3 30 30 H 1.07994 * 127.04821 * 180.02562 * 4 3 2 31 31 H 1.09009 * 109.47336 * 244.99627 * 6 5 4 32 32 H 1.09002 * 109.47615 * 4.99478 * 6 5 4 33 33 H 1.08999 * 109.46419 * 299.99649 * 7 6 5 34 34 H 1.08995 * 109.47234 * 59.99596 * 7 6 5 35 35 H 0.97001 * 120.00029 * 0.02562 * 10 8 7 36 36 H 1.09003 * 109.47010 * 300.00607 * 11 10 8 37 37 H 1.09003 * 109.46645 * 60.00192 * 11 10 8 38 38 H 1.08994 * 109.47139 * 300.00217 * 12 11 10 39 39 H 1.09002 * 109.46839 * 59.99704 * 12 11 10 40 40 H 1.00895 * 110.99812 * 56.04626 * 13 12 11 41 41 H 1.09003 * 109.46902 * 300.00030 * 14 13 12 42 42 H 1.09003 * 109.47166 * 59.99844 * 14 13 12 43 43 H 0.97002 * 120.00127 * 0.02562 * 17 15 14 44 44 H 0.97005 * 120.00576 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4592 0.6984 0.0006 5 6 3.4591 -0.6983 0.0015 6 6 4.6619 -1.6063 0.0019 7 6 4.5707 -2.5732 1.1842 8 6 5.7731 -3.4815 1.1842 9 8 6.6195 -3.3672 0.3230 10 7 5.9080 -4.4209 2.1411 11 6 7.0767 -5.3044 2.1408 12 6 6.9856 -6.2711 3.3232 13 7 8.1578 -7.1565 3.3231 14 6 8.1040 -8.1011 4.4470 15 6 9.3196 -8.9911 4.4136 16 8 10.1490 -8.8526 3.5395 17 7 9.4853 -9.9411 5.3552 18 6 10.5910 -10.7512 5.3246 19 1 11.3294 -10.6277 4.5462 20 6 10.7615 -11.7309 6.2950 21 7 11.8210 -12.5077 6.2654 22 14 9.4845 -11.9438 7.6418 23 1 8.4532 -12.9151 7.1968 24 1 10.1431 -12.4503 8.8726 25 1 8.8425 -10.6355 7.9264 26 7 2.1956 -1.0583 0.0005 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8896 0.5143 29 1 -0.3633 0.8903 0.5134 30 1 4.3211 1.3491 0.0011 31 1 4.6900 -2.1726 -0.9291 32 1 5.5687 -1.0081 0.0908 33 1 4.5427 -2.0069 2.1151 34 1 3.6639 -3.1713 1.0953 35 1 5.2310 -4.5126 2.8297 36 1 7.1037 -5.8709 1.2099 37 1 7.9840 -4.7066 2.2288 38 1 6.9584 -5.7049 4.2541 39 1 6.0783 -6.8687 3.2347 40 1 9.0140 -6.6229 3.3395 41 1 8.0839 -7.5479 5.3859 42 1 7.2047 -8.7117 4.3657 43 1 8.8219 -10.0522 6.0541 44 1 11.9403 -13.1914 6.9431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133914142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:29 Heat of formation + Delta-G solvation = 4.982657 kcal Electronic energy + Delta-G solvation = -25107.764824 eV Core-core repulsion = 21096.620135 eV Total energy + Delta-G solvation = -4011.144689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.50766 -40.75361 -40.27928 -37.52412 -36.04952 -35.81671 -35.17571 -33.87822 -33.73873 -32.66677 -30.69976 -28.72332 -27.66454 -25.92818 -24.93355 -23.29363 -23.04235 -21.86680 -21.28450 -21.03181 -20.27829 -18.47009 -18.00755 -17.77014 -17.52602 -17.30402 -17.03179 -16.72573 -16.54524 -15.72292 -15.61473 -15.58388 -15.08969 -14.98880 -14.75784 -14.51017 -14.29157 -14.10778 -13.87036 -13.77914 -13.52661 -13.36155 -13.05592 -12.95375 -12.64267 -12.56650 -12.39733 -12.33906 -11.96456 -11.93375 -11.78621 -11.50416 -11.25119 -10.93497 -10.44733 -10.24146 -10.09371 -10.04633 -9.36323 -8.40228 -6.01748 0.81826 1.31354 1.37667 1.42180 1.46486 1.52881 1.68094 1.96619 2.10278 2.24706 2.83874 3.16062 3.16633 3.48151 3.74071 3.84289 3.93893 4.12088 4.18206 4.21298 4.25618 4.32342 4.39272 4.46049 4.47882 4.50056 4.59247 4.61687 4.70831 4.85826 4.95051 4.99977 5.07497 5.19242 5.32296 5.43809 5.53672 5.78401 5.89271 6.02325 6.32642 6.58363 6.60792 6.89055 7.30075 7.34688 7.40589 7.97800 8.77531 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.036008 B = 0.001401 C = 0.001361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.413449 B =19982.323765 C =20575.623415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.163 5.163 3 N -0.312 5.312 4 C -0.028 4.028 5 C -0.003 4.003 6 C -0.010 4.010 7 C -0.120 4.120 8 C 0.511 3.489 9 O -0.585 6.585 10 N -0.716 5.716 11 C 0.125 3.875 12 C 0.059 3.941 13 N -0.691 5.691 14 C 0.066 3.934 15 C 0.445 3.555 16 O -0.617 6.617 17 N -0.589 5.589 18 C -0.332 4.332 19 H 0.053 0.947 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.257 1.257 24 H -0.276 1.276 25 H -0.228 1.228 26 N -0.303 5.303 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.221 0.779 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.418 0.582 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.346 0.654 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.391 0.609 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.589 26.930 -3.993 40.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.065 5.065 3 N -0.154 5.154 4 C -0.209 4.209 5 C -0.165 4.165 6 C -0.050 4.050 7 C -0.160 4.160 8 C 0.299 3.701 9 O -0.465 6.465 10 N -0.369 5.369 11 C 0.000 4.000 12 C -0.070 4.070 13 N -0.324 5.324 14 C -0.067 4.067 15 C 0.233 3.767 16 O -0.501 6.501 17 N -0.231 5.231 18 C -0.461 4.461 19 H 0.071 0.929 20 C -0.214 4.214 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.182 1.182 24 H -0.201 1.201 25 H -0.151 1.151 26 N -0.147 5.147 27 H 0.119 0.881 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.238 0.762 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.164 0.836 41 H 0.101 0.899 42 H 0.137 0.863 43 H 0.227 0.773 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -30.028 26.507 -5.547 40.436 hybrid contribution 1.047 -0.163 1.442 1.789 sum -28.980 26.344 -4.105 39.379 Atomic orbital electron populations 1.22524 0.68125 1.07361 1.06271 1.48394 1.10124 0.98820 1.49158 1.74043 1.04664 1.16811 1.19852 1.25166 0.94942 0.95006 1.05789 1.23294 0.92522 0.94575 1.06112 1.19566 0.91816 0.94852 0.98720 1.21542 0.95910 0.97143 1.01431 1.21163 0.87853 0.80780 0.80287 1.90731 1.45255 1.71691 1.38838 1.45769 1.25330 1.34828 1.30952 1.21050 0.88461 0.91417 0.99043 1.22074 0.94281 0.93804 0.96797 1.59884 1.05907 1.21284 1.45368 1.21625 0.95973 0.94873 0.94188 1.21074 0.89605 0.83446 0.82548 1.90559 1.47789 1.72839 1.38960 1.42009 1.21869 1.31931 1.27327 1.19020 1.00690 1.13200 1.13189 0.92873 1.26149 0.99715 0.94734 1.00777 1.69813 1.29812 1.21158 1.36824 0.85334 0.78086 0.80747 0.77135 1.18165 1.20145 1.15111 1.73950 1.04120 1.16389 1.20201 0.88079 0.86444 0.86469 0.76228 0.90572 0.88251 0.86582 0.87205 0.74441 0.92684 0.92663 0.92190 0.88643 0.83553 0.89897 0.86295 0.77326 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.39 11.57 127.77 1.48 1.87 16 2 N -0.16 -2.30 4.35 -206.55 -0.90 -3.20 16 3 N -0.31 -5.07 12.05 -56.87 -0.69 -5.75 16 4 C -0.03 -0.38 12.15 85.11 1.03 0.65 16 5 C 0.00 -0.04 6.61 42.97 0.28 0.24 16 6 C -0.01 -0.13 5.10 29.85 0.15 0.02 16 7 C -0.12 -1.31 5.68 29.85 0.17 -1.14 16 8 C 0.51 9.12 7.83 87.66 0.69 9.81 16 9 O -0.59 -16.20 15.98 -3.05 -0.05 -16.24 16 10 N -0.72 -10.10 5.56 -463.05 -2.57 -12.67 16 11 C 0.13 2.47 5.93 86.38 0.51 2.99 16 12 C 0.06 1.02 5.80 86.30 0.50 1.52 16 13 N -0.69 -19.06 6.12 -517.92 -3.17 -22.23 16 14 C 0.07 1.84 6.17 85.55 0.53 2.37 16 15 C 0.45 19.75 7.82 87.66 0.69 20.43 16 16 O -0.62 -34.37 15.78 -3.07 -0.05 -34.41 16 17 N -0.59 -27.31 5.09 -306.99 -1.56 -28.88 16 18 C -0.33 -19.42 10.16 84.04 0.85 -18.57 16 19 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 20 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 21 N -0.94 -56.42 13.96 21.66 0.30 -56.12 16 22 Si 0.97 38.02 27.74 68.60 1.90 39.93 16 23 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 24 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 26 N -0.30 -4.95 12.04 -47.25 -0.57 -5.52 16 27 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.12 0.10 8.14 -2.39 -0.02 0.09 16 30 H 0.22 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.08 1.25 8.10 -2.38 -0.02 1.23 16 32 H 0.10 1.23 8.09 -2.39 -0.02 1.21 16 33 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.42 2.81 8.47 -92.71 -0.79 2.03 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.35 10.47 8.43 -89.70 -0.76 9.71 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.39 14.67 5.76 -92.71 -0.53 14.14 16 44 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -90.48 381.90 -1.08 -91.56 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -1.08 Total: 33.72 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 7.35 Total: 19.82 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -9.16 Total: -134.37 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.10 Total: -50.66 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.90 Total: 39.93 kcal Total: -90.48 -1.08 -91.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133914142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.543 kcal (2) G-P(sol) polarization free energy of solvation -90.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds