Wall clock time and date at job start Fri Apr 10 2020 18:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47086 * 2 1 4 4 C 1.52995 * 109.47225 * 239.99826 * 2 1 3 5 5 C 1.52997 * 109.47355 * 174.99942 * 4 2 1 6 6 H 1.09001 * 109.46961 * 304.99956 * 5 4 2 7 7 C 1.53004 * 109.47581 * 184.99807 * 5 4 2 8 8 N 1.46509 * 109.46892 * 64.99929 * 5 4 2 9 9 C 1.34776 * 119.99837 * 205.00109 * 8 5 4 10 10 O 1.21624 * 119.99876 * 0.02562 * 9 8 5 11 11 C 1.47233 * 120.00230 * 179.97438 * 9 8 5 12 12 C 1.36996 * 127.19166 * 179.97438 * 11 9 8 13 13 N 1.33320 * 106.37234 * 180.02562 * 12 11 9 14 14 N 1.28508 * 109.44102 * 0.02562 * 13 12 11 15 15 N 1.28714 * 110.63887 * 0.02562 * 14 13 12 16 16 H 0.97001 * 126.04314 * 179.73816 * 15 14 13 17 17 N 1.46900 * 109.46999 * 119.99838 * 2 1 3 18 18 C 1.46904 * 110.99862 * 274.99812 * 17 2 1 19 19 C 1.50697 * 109.47200 * 180.02562 * 18 17 2 20 20 O 1.21299 * 119.99820 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00342 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00253 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00042 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99896 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00424 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99958 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46997 * 59.99753 * 26 24 22 28 28 H 1.48498 * 109.47305 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47119 * 300.00184 * 26 24 22 30 30 H 1.08998 * 109.47022 * 300.00710 * 1 2 3 31 31 H 1.09005 * 109.46781 * 60.00237 * 1 2 3 32 32 H 1.09001 * 109.47086 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47254 * 54.99798 * 4 2 1 34 34 H 1.09005 * 109.47101 * 295.00438 * 4 2 1 35 35 H 1.08995 * 109.47339 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.46847 * 300.00730 * 7 5 4 37 37 H 1.09001 * 109.46529 * 59.99674 * 7 5 4 38 38 H 0.96995 * 119.99610 * 25.00073 * 8 5 4 39 39 H 1.07997 * 126.81877 * 0.02824 * 12 11 9 40 40 H 1.00892 * 111.00096 * 38.95038 * 17 2 1 41 41 H 1.08996 * 109.47032 * 300.00227 * 18 17 2 42 42 H 1.08999 * 109.46867 * 60.00331 * 18 17 2 43 43 H 0.97005 * 119.99994 * 0.02562 * 21 19 18 44 44 H 0.97000 * 120.00532 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.8571 0.4358 -1.2678 7 6 4.0646 -1.2251 -2.6240 8 7 4.1537 -1.3342 -0.1823 9 6 5.3748 -0.9911 0.2734 10 8 5.9876 -0.0826 -0.2542 11 6 5.9664 -1.7151 1.4108 12 6 7.1879 -1.4919 1.9895 13 7 7.3030 -2.3788 2.9782 14 7 6.2447 -3.1063 3.0256 15 7 5.4109 -2.7544 2.1103 16 1 4.5439 -3.1559 1.9431 17 7 2.0197 -0.6925 1.1995 18 6 2.0825 0.2227 2.3469 19 6 2.5885 -0.5213 3.5558 20 8 2.8697 -1.6981 3.4698 21 7 2.7287 0.1208 4.7324 22 6 3.1895 -0.5560 5.8320 23 1 3.4399 -1.6037 5.7555 24 6 3.3335 0.1059 7.0452 25 7 3.0285 1.3807 7.1385 26 14 3.9608 -0.8164 8.5437 27 1 5.3174 -1.3513 8.2636 28 1 4.0237 0.1086 9.7037 29 1 3.0404 -1.9394 8.8548 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -0.2618 -2.1370 34 1 1.7516 -1.7716 -1.2055 35 1 5.1509 -1.1478 -2.6701 36 1 3.7723 -2.2741 -2.6698 37 1 3.6264 -0.6888 -3.4657 38 1 3.6647 -2.0584 0.2387 39 1 7.9136 -0.7456 1.7020 40 1 1.4496 -1.4978 1.4101 41 1 2.7589 1.0463 2.1181 42 1 1.0871 0.6164 2.5525 43 1 2.5035 1.0618 4.8012 44 1 3.1286 1.8427 7.9855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134842465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:47 Heat of formation + Delta-G solvation = 16.695299 kcal Electronic energy + Delta-G solvation = -28948.122761 eV Core-core repulsion = 24937.485970 eV Total energy + Delta-G solvation = -4010.636791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.88589 -39.67511 -38.49623 -37.29998 -35.07985 -33.96643 -33.22619 -31.90923 -31.31404 -30.88426 -29.97554 -27.03962 -26.29779 -24.32561 -23.99797 -22.62608 -21.50957 -20.94618 -20.45365 -19.34596 -18.88663 -17.96008 -16.47876 -16.44237 -16.04939 -15.90760 -15.37221 -14.90663 -14.79874 -14.53106 -14.20405 -14.12817 -13.90669 -13.75884 -13.53678 -13.19608 -12.87511 -12.57603 -12.32357 -12.27751 -12.01118 -11.76410 -11.62759 -11.53185 -11.41469 -11.03938 -10.95735 -10.92165 -10.85808 -10.45418 -10.29670 -10.24762 -9.96477 -9.54002 -9.22163 -8.97012 -8.54781 -8.15984 -8.01845 -6.45671 -3.86814 1.30628 2.70538 2.88944 3.18579 3.20261 3.26275 3.31661 3.41824 3.81966 4.01224 4.26150 4.42865 4.71002 4.79501 4.98590 5.00171 5.06186 5.15403 5.21398 5.23007 5.32726 5.35947 5.39479 5.55417 5.58509 5.61254 5.66569 5.69362 5.78494 5.90720 5.97102 6.00189 6.11452 6.17850 6.30617 6.55265 7.03112 7.05512 7.47509 7.51647 7.59965 8.00272 8.25302 8.52859 8.69737 9.12532 9.47601 9.95834 10.71411 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.004823 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.707437 B = 5804.712466 C = 7587.445874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 H 0.079 0.921 4 C -0.116 4.116 5 C 0.153 3.847 6 H 0.086 0.914 7 C -0.165 4.165 8 N -0.689 5.689 9 C 0.603 3.397 10 O -0.537 6.537 11 C -0.064 4.064 12 C 0.021 3.979 13 N -0.281 5.281 14 N -0.040 5.040 15 N -0.344 5.344 16 H 0.453 0.547 17 N -0.662 5.662 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.593 6.593 21 N -0.556 5.556 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.026 3.974 25 N -0.900 5.900 26 Si 0.928 3.072 27 H -0.271 1.271 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.403 0.597 39 H 0.195 0.805 40 H 0.346 0.654 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.391 0.609 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 -2.806 -18.252 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 H 0.097 0.903 4 C -0.154 4.154 5 C 0.048 3.952 6 H 0.105 0.895 7 C -0.224 4.224 8 N -0.340 5.340 9 C 0.387 3.613 10 O -0.413 6.413 11 C -0.199 4.199 12 C -0.140 4.140 13 N -0.145 5.145 14 N -0.022 5.022 15 N -0.071 5.071 16 H 0.300 0.700 17 N -0.294 5.294 18 C -0.082 4.082 19 C 0.225 3.775 20 O -0.479 6.479 21 N -0.191 5.191 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.176 4.176 25 N -0.540 5.540 26 Si 0.755 3.245 27 H -0.196 1.196 28 H -0.209 1.209 29 H -0.199 1.199 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.240 0.760 39 H 0.212 0.788 40 H 0.165 0.835 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.224 0.776 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.278 -3.613 -17.488 18.002 hybrid contribution -2.005 0.669 0.492 2.170 sum -4.283 -2.944 -16.996 17.773 Atomic orbital electron populations 1.22503 0.97229 1.02166 1.02218 1.21639 0.92380 0.98365 0.90654 0.90316 1.21937 0.94230 1.01650 0.97588 1.20823 0.92109 0.97393 0.84858 0.89544 1.22218 1.02256 1.00980 0.96902 1.45705 1.16935 1.37632 1.33682 1.16701 0.81443 0.82369 0.80813 1.90804 1.62055 1.29926 1.58533 1.22205 0.97734 0.97960 1.02037 1.23729 0.96063 1.00265 0.93894 1.74942 1.15672 1.05988 1.17902 1.78171 0.96038 1.20254 1.07782 1.45448 1.17681 1.23137 1.20822 0.69970 1.60271 1.56979 1.09399 1.02774 1.21676 0.99856 0.95755 0.90882 1.19686 0.85554 0.88162 0.84076 1.90398 1.56485 1.16212 1.84810 1.41864 1.56802 1.12428 1.08046 1.19605 1.40204 0.96395 0.86644 0.87961 1.25259 0.97305 0.95720 0.99354 1.69596 1.48186 1.08894 1.27360 0.85949 0.79757 0.78828 0.79973 1.19569 1.20944 1.19916 0.92513 0.92205 0.92390 0.90097 0.91160 0.91978 0.92599 0.91752 0.76033 0.78769 0.83472 0.90007 0.93927 0.77569 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.16 37.16 0.34 -1.15 16 2 C 0.08 0.73 2.59 -67.71 -0.18 0.56 16 3 H 0.08 0.80 7.80 -51.93 -0.40 0.39 16 4 C -0.12 -0.86 4.54 -26.74 -0.12 -0.98 16 5 C 0.15 1.46 2.57 -67.92 -0.17 1.28 16 6 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 7 C -0.17 -1.37 9.48 37.16 0.35 -1.02 16 8 N -0.69 -7.85 3.80 -54.94 -0.21 -8.06 16 9 C 0.60 8.96 7.77 -12.61 -0.10 8.86 16 10 O -0.54 -9.26 16.59 5.26 0.09 -9.17 16 11 C -0.06 -1.03 7.17 -82.33 -0.59 -1.62 16 12 C 0.02 0.35 11.87 -17.36 -0.21 0.15 16 13 N -0.28 -5.36 12.35 30.47 0.38 -4.99 16 14 N -0.04 -0.75 13.35 60.35 0.81 0.05 16 15 N -0.34 -5.48 6.97 33.31 0.23 -5.25 16 16 H 0.45 6.23 8.21 -190.33 -1.56 4.67 16 17 N -0.66 -7.87 3.48 -107.99 -0.38 -8.24 16 18 C 0.05 0.78 5.97 -4.98 -0.03 0.76 16 19 C 0.44 9.23 7.82 -10.99 -0.09 9.15 16 20 O -0.59 -13.22 15.67 5.54 0.09 -13.13 16 21 N -0.56 -13.48 5.29 -10.97 -0.06 -13.54 16 22 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 23 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 24 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 25 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 26 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.06 0.53 7.45 -51.93 -0.39 0.15 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.40 4.28 6.86 -40.82 -0.28 4.00 16 39 H 0.20 2.79 8.06 -52.49 -0.42 2.36 16 40 H 0.35 4.19 8.17 -39.30 -0.32 3.87 16 41 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 42 H 0.04 0.62 7.44 -51.93 -0.39 0.23 16 43 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -31.60 375.48 -6.09 -37.69 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -7.37 Total: 18.03 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -1.03 Total: 8.29 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: 1.50 Total: -63.77 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.17 Total: -22.31 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.60 -6.09 -37.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134842465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.383 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds