Wall clock time and date at job start Fri Apr 10 2020 18:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47086 * 2 1 4 4 C 1.52995 * 109.47225 * 239.99826 * 2 1 3 5 5 C 1.52997 * 109.47355 * 174.99942 * 4 2 1 6 6 H 1.09001 * 109.46961 * 304.99956 * 5 4 2 7 7 C 1.53004 * 109.47581 * 184.99807 * 5 4 2 8 8 N 1.46509 * 109.46892 * 64.99929 * 5 4 2 9 9 C 1.34776 * 119.99837 * 205.00109 * 8 5 4 10 10 O 1.21624 * 119.99876 * 0.02562 * 9 8 5 11 11 C 1.47233 * 120.00230 * 179.97438 * 9 8 5 12 12 C 1.36996 * 127.19166 * 179.97438 * 11 9 8 13 13 N 1.33320 * 106.37234 * 180.02562 * 12 11 9 14 14 N 1.28508 * 109.44102 * 0.02562 * 13 12 11 15 15 N 1.28714 * 110.63887 * 0.02562 * 14 13 12 16 16 H 0.97001 * 126.04314 * 179.73816 * 15 14 13 17 17 N 1.46900 * 109.46999 * 119.99838 * 2 1 3 18 18 C 1.46904 * 110.99862 * 274.99812 * 17 2 1 19 19 C 1.50697 * 109.47200 * 180.02562 * 18 17 2 20 20 O 1.21299 * 119.99820 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00342 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00253 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00042 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99896 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00424 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99958 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46997 * 59.99753 * 26 24 22 28 28 H 1.48498 * 109.47305 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47119 * 300.00184 * 26 24 22 30 30 H 1.08998 * 109.47022 * 300.00710 * 1 2 3 31 31 H 1.09005 * 109.46781 * 60.00237 * 1 2 3 32 32 H 1.09001 * 109.47086 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47254 * 54.99798 * 4 2 1 34 34 H 1.09005 * 109.47101 * 295.00438 * 4 2 1 35 35 H 1.08995 * 109.47339 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.46847 * 300.00730 * 7 5 4 37 37 H 1.09001 * 109.46529 * 59.99674 * 7 5 4 38 38 H 0.96995 * 119.99610 * 25.00073 * 8 5 4 39 39 H 1.07997 * 126.81877 * 0.02824 * 12 11 9 40 40 H 1.00892 * 111.00096 * 38.95038 * 17 2 1 41 41 H 1.08996 * 109.47032 * 300.00227 * 18 17 2 42 42 H 1.08999 * 109.46867 * 60.00331 * 18 17 2 43 43 H 0.97005 * 119.99994 * 0.02562 * 21 19 18 44 44 H 0.97000 * 120.00532 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.8571 0.4358 -1.2678 7 6 4.0646 -1.2251 -2.6240 8 7 4.1537 -1.3342 -0.1823 9 6 5.3748 -0.9911 0.2734 10 8 5.9876 -0.0826 -0.2542 11 6 5.9664 -1.7151 1.4108 12 6 7.1879 -1.4919 1.9895 13 7 7.3030 -2.3788 2.9782 14 7 6.2447 -3.1063 3.0256 15 7 5.4109 -2.7544 2.1103 16 1 4.5439 -3.1559 1.9431 17 7 2.0197 -0.6925 1.1995 18 6 2.0825 0.2227 2.3469 19 6 2.5885 -0.5213 3.5558 20 8 2.8697 -1.6981 3.4698 21 7 2.7287 0.1208 4.7324 22 6 3.1895 -0.5560 5.8320 23 1 3.4399 -1.6037 5.7555 24 6 3.3335 0.1059 7.0452 25 7 3.0285 1.3807 7.1385 26 14 3.9608 -0.8164 8.5437 27 1 5.3174 -1.3513 8.2636 28 1 4.0237 0.1086 9.7037 29 1 3.0404 -1.9394 8.8548 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -0.2618 -2.1370 34 1 1.7516 -1.7716 -1.2055 35 1 5.1509 -1.1478 -2.6701 36 1 3.7723 -2.2741 -2.6698 37 1 3.6264 -0.6888 -3.4657 38 1 3.6647 -2.0584 0.2387 39 1 7.9136 -0.7456 1.7020 40 1 1.4496 -1.4978 1.4101 41 1 2.7589 1.0463 2.1181 42 1 1.0871 0.6164 2.5525 43 1 2.5035 1.0618 4.8012 44 1 3.1286 1.8427 7.9855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134842465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:46 Heat of formation + Delta-G solvation = -8.295941 kcal Electronic energy + Delta-G solvation = -28949.206463 eV Core-core repulsion = 24937.485970 eV Total energy + Delta-G solvation = -4011.720492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.24651 -40.76615 -40.08325 -38.41964 -36.21965 -35.75845 -34.55523 -33.27846 -32.98471 -32.11971 -30.96829 -27.94297 -27.59048 -25.65925 -25.53441 -23.95190 -22.57290 -21.78365 -21.54602 -20.99319 -20.09163 -19.89346 -17.81391 -17.54850 -17.43040 -17.23017 -16.72534 -16.38005 -16.07600 -15.77219 -15.58932 -15.41311 -15.21918 -15.04834 -14.67245 -14.27075 -13.92847 -13.56773 -13.51078 -13.33819 -13.15404 -13.09750 -12.94272 -12.78824 -12.59863 -12.43315 -12.29019 -12.21126 -12.14999 -11.70636 -11.68096 -11.59714 -11.46408 -11.18331 -10.53478 -10.27102 -10.00079 -9.97880 -9.19777 -8.46829 -5.93410 0.00076 1.31931 1.35713 1.39269 1.48215 1.62045 2.06883 2.09974 2.23847 2.27086 2.95691 3.22300 3.43705 3.57885 3.72257 3.83353 4.04951 4.10680 4.26833 4.26902 4.33180 4.42235 4.47319 4.52944 4.61095 4.65549 4.82520 4.87665 4.99585 5.00738 5.05412 5.08875 5.28076 5.33291 5.41176 5.43256 5.60992 5.78823 5.91873 6.11441 6.50746 6.53455 6.59504 7.13760 7.14897 7.31175 7.59395 8.11478 8.70437 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.004823 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.707437 B = 5804.712466 C = 7587.445874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 H 0.071 0.929 4 C -0.104 4.104 5 C 0.148 3.852 6 H 0.069 0.931 7 C -0.159 4.159 8 N -0.671 5.671 9 C 0.601 3.399 10 O -0.563 6.563 11 C -0.059 4.059 12 C 0.008 3.992 13 N -0.305 5.305 14 N -0.070 5.070 15 N -0.331 5.331 16 H 0.461 0.539 17 N -0.662 5.662 18 C 0.067 3.933 19 C 0.444 3.556 20 O -0.603 6.603 21 N -0.578 5.578 22 C -0.320 4.320 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.923 5.923 26 Si 0.982 3.018 27 H -0.280 1.280 28 H -0.272 1.272 29 H -0.269 1.269 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.409 0.591 39 H 0.214 0.786 40 H 0.348 0.652 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.391 0.609 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.595 -2.964 -20.302 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.029 4.029 3 H 0.089 0.911 4 C -0.142 4.142 5 C 0.044 3.956 6 H 0.087 0.913 7 C -0.217 4.217 8 N -0.321 5.321 9 C 0.384 3.616 10 O -0.441 6.441 11 C -0.195 4.195 12 C -0.153 4.153 13 N -0.168 5.168 14 N -0.052 5.052 15 N -0.058 5.058 16 H 0.310 0.690 17 N -0.295 5.295 18 C -0.065 4.065 19 C 0.231 3.769 20 O -0.489 6.489 21 N -0.215 5.215 22 C -0.449 4.449 23 H 0.098 0.902 24 C -0.212 4.212 25 N -0.564 5.564 26 Si 0.806 3.194 27 H -0.205 1.205 28 H -0.197 1.197 29 H -0.194 1.194 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.246 0.754 39 H 0.231 0.769 40 H 0.167 0.833 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.224 0.776 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.972 -3.806 -19.567 20.326 hybrid contribution -1.553 0.684 0.936 1.938 sum -5.525 -3.122 -18.631 19.683 Atomic orbital electron populations 1.22425 0.95904 1.02690 1.02445 1.21722 0.93368 0.97967 0.89857 0.91059 1.21914 0.92128 1.02624 0.97574 1.21044 0.93647 0.96266 0.84609 0.91315 1.22159 1.00845 1.02019 0.96694 1.45737 1.15572 1.37203 1.33596 1.16619 0.82342 0.82112 0.80503 1.90793 1.62944 1.31106 1.59306 1.22483 0.97498 0.97503 1.02057 1.24154 0.97059 1.00458 0.93608 1.74889 1.16165 1.06811 1.18979 1.78113 0.96725 1.21237 1.09113 1.45393 1.17629 1.22792 1.20015 0.68997 1.60279 1.57812 1.09073 1.02339 1.21443 1.00214 0.95419 0.89463 1.20722 0.83273 0.88229 0.84646 1.90385 1.56116 1.17127 1.85270 1.41951 1.58504 1.12463 1.08536 1.19505 1.41380 0.95753 0.88304 0.90247 1.25902 0.97526 0.96494 1.01319 1.69656 1.49176 1.09645 1.27933 0.85145 0.78604 0.78063 0.77541 1.20535 1.19684 1.19361 0.93921 0.90391 0.91702 0.87249 0.89699 0.94252 0.91308 0.89561 0.75386 0.76929 0.83260 0.90005 0.92353 0.77588 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.16 71.98 0.66 -1.58 16 2 C 0.08 1.21 2.59 44.92 0.12 1.33 16 3 H 0.07 1.24 7.80 -2.39 -0.02 1.22 16 4 C -0.10 -1.12 4.54 30.59 0.14 -0.98 16 5 C 0.15 2.44 2.57 44.99 0.12 2.55 16 6 H 0.07 1.44 7.58 -2.39 -0.02 1.42 16 7 C -0.16 -2.18 9.48 71.98 0.68 -1.50 16 8 N -0.67 -14.11 3.80 -445.97 -1.69 -15.80 16 9 C 0.60 17.42 7.77 86.61 0.67 18.09 16 10 O -0.56 -19.18 16.59 -4.11 -0.07 -19.25 16 11 C -0.06 -1.89 7.17 40.40 0.29 -1.60 16 12 C 0.01 0.27 11.87 84.18 1.00 1.27 16 13 N -0.30 -11.88 12.35 -57.51 -0.71 -12.59 16 14 N -0.07 -2.68 13.35 37.02 0.49 -2.18 16 15 N -0.33 -10.52 6.97 -48.52 -0.34 -10.86 16 16 H 0.46 12.48 8.21 -219.90 -1.81 10.68 16 17 N -0.66 -14.22 3.48 -495.57 -1.72 -15.94 16 18 C 0.07 1.97 5.97 85.56 0.51 2.48 16 19 C 0.44 18.51 7.82 87.66 0.69 19.19 16 20 O -0.60 -26.73 15.67 -3.09 -0.05 -26.78 16 21 N -0.58 -28.33 5.29 -306.99 -1.62 -29.96 16 22 C -0.32 -17.77 9.68 84.04 0.81 -16.96 16 23 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 25 N -0.92 -50.60 13.05 21.66 0.28 -50.32 16 26 Si 0.98 44.39 29.55 68.60 2.03 46.42 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 29 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 30 H 0.04 0.68 7.45 -2.39 -0.02 0.66 16 31 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.41 7.79 6.86 -92.71 -0.64 7.15 16 39 H 0.21 6.15 8.06 -2.91 -0.02 6.12 16 40 H 0.35 7.50 8.17 -89.70 -0.73 6.77 16 41 H 0.08 2.47 8.05 -2.39 -0.02 2.46 16 42 H 0.06 1.57 7.44 -2.39 -0.02 1.55 16 43 H 0.39 18.92 7.90 -92.70 -0.73 18.19 16 44 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -69.78 375.48 -0.08 -69.86 By element: Atomic # 1 Polarization: 48.14 SS G_CDS: -2.83 Total: 45.31 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 6.15 Total: 22.08 kcal Atomic # 7 Polarization: -132.34 SS G_CDS: -5.31 Total: -137.65 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.12 Total: -46.02 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -69.78 -0.08 -69.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134842465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.564 kcal (2) G-P(sol) polarization free energy of solvation -69.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds