Wall clock time and date at job start Fri Apr 10 2020 18:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47253 * 2 1 4 4 C 1.46501 * 119.99687 * 269.99766 * 3 2 1 5 5 C 1.50695 * 109.47260 * 269.99610 * 4 3 2 6 6 H 1.07999 * 120.00039 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99963 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00007 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99889 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46718 * 90.00217 * 9 7 5 11 11 H 1.48497 * 109.47289 * 210.00496 * 9 7 5 12 12 H 1.48505 * 109.47283 * 330.00870 * 9 7 5 13 13 C 1.34773 * 120.00291 * 89.99763 * 3 2 1 14 14 O 1.21280 * 120.00260 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00030 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47345 * 180.02562 * 15 13 3 17 17 C 1.46901 * 111.00158 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47218 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.46966 * 180.02562 * 18 17 16 20 20 C 1.34778 * 119.99592 * 180.02562 * 19 18 17 21 21 O 1.21546 * 120.00331 * 359.97438 * 20 19 18 22 22 C 1.47871 * 119.99736 * 179.97438 * 20 19 18 23 23 N 1.34549 * 126.05131 * 179.97438 * 22 20 19 24 24 C 1.30862 * 107.27315 * 180.02562 * 23 22 20 25 25 N 1.34584 * 107.62652 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.75481 * 179.73959 * 25 24 23 27 27 N 1.28852 * 108.50061 * 359.97438 * 25 24 23 28 28 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47239 * 300.00376 * 1 2 3 30 30 H 1.09000 * 109.46911 * 60.00078 * 1 2 3 31 31 H 1.09002 * 109.47229 * 240.00096 * 2 1 3 32 32 H 1.09000 * 109.46911 * 119.99922 * 2 1 3 33 33 H 1.08996 * 109.47667 * 30.00206 * 4 3 2 34 34 H 1.09002 * 109.47377 * 149.99956 * 4 3 2 35 35 H 0.96999 * 119.99849 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46672 * 59.99568 * 15 13 3 37 37 H 1.08997 * 109.46771 * 300.00360 * 15 13 3 38 38 H 1.00905 * 111.00226 * 303.95194 * 16 15 13 39 39 H 1.08996 * 109.47268 * 60.00148 * 17 16 15 40 40 H 1.09001 * 109.47290 * 300.00163 * 17 16 15 41 41 H 1.08996 * 109.46857 * 59.99925 * 18 17 16 42 42 H 1.09001 * 109.47147 * 300.00280 * 18 17 16 43 43 H 0.97001 * 120.00109 * 359.97438 * 19 18 17 44 44 H 1.07997 * 126.19071 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8780 8 7 3.3491 3.1255 -3.6182 9 14 5.9132 2.0954 -3.4175 10 1 5.9760 0.8742 -4.2601 11 1 6.3924 3.2625 -4.2008 12 1 6.7736 1.9156 -2.2205 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9923 1.3061 2.4723 16 7 2.3098 2.2063 3.5888 17 6 2.0762 1.5461 4.8801 18 6 2.4177 2.5125 6.0161 19 7 2.1854 1.8539 7.3039 20 6 2.4198 2.5187 8.4527 21 8 2.8244 3.6644 8.4203 22 6 2.1848 1.8541 9.7526 23 7 2.3777 2.3998 10.9672 24 6 2.0578 1.4937 11.8556 25 7 1.6687 0.3904 11.1904 26 1 1.3786 -0.4424 11.5945 27 7 1.7511 0.6248 9.9260 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1386 35 1 3.6752 3.5159 -4.4441 36 1 2.6228 0.4188 2.5298 37 1 0.9445 1.0115 2.5301 38 1 3.2579 2.5451 3.5218 39 1 2.7073 0.6606 4.9549 40 1 1.0289 1.2532 4.9543 41 1 1.7869 3.3983 5.9415 42 1 3.4651 2.8051 5.9417 43 1 1.8621 0.9397 7.3298 44 1 2.0994 1.6099 12.9285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135521174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:01 Heat of formation + Delta-G solvation = 25.652356 kcal Electronic energy + Delta-G solvation = -26094.752639 eV Core-core repulsion = 22084.504255 eV Total energy + Delta-G solvation = -4010.248384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.98162 -39.76065 -39.10991 -36.58226 -35.26198 -34.45711 -33.91685 -32.78097 -32.11298 -30.12501 -29.69607 -27.47118 -25.76043 -24.44068 -23.41578 -23.00639 -22.33943 -22.08865 -20.81217 -19.43903 -18.44290 -17.77147 -16.90259 -16.53808 -16.42534 -16.36704 -16.12045 -15.50463 -15.31765 -15.18413 -14.53301 -14.29664 -14.09275 -13.63292 -13.40730 -13.25283 -13.22349 -12.75336 -12.41592 -12.21305 -11.97590 -11.76245 -11.61652 -11.43528 -11.23330 -11.15951 -11.02383 -10.89692 -10.73657 -10.56760 -10.51127 -10.27493 -10.11444 -9.61683 -9.39792 -8.92720 -8.41914 -8.40508 -7.63472 -6.02544 -4.07293 0.84633 1.64947 2.05263 2.50207 3.00617 3.30660 3.37608 3.40542 3.47075 3.66510 3.85621 3.96799 4.33377 4.42098 4.48479 4.70366 4.89305 5.09858 5.23978 5.26285 5.31951 5.40577 5.45254 5.50187 5.65067 5.66824 5.71027 5.77280 5.81600 5.99965 6.03501 6.14331 6.23393 6.48355 6.77123 7.01388 7.12798 7.32612 7.47292 7.48606 7.57809 7.82847 7.94109 8.25648 8.45506 8.92408 9.13683 9.57755 11.05430 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.001850 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.168460 B =15131.328461 C =15776.191111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.120 3.880 19 N -0.711 5.711 20 C 0.613 3.387 21 O -0.503 6.503 22 C 0.154 3.846 23 N -0.461 5.461 24 C 0.198 3.802 25 N -0.398 5.398 26 H 0.452 0.548 27 N -0.277 5.277 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.356 0.644 39 H 0.036 0.964 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.407 0.593 44 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 -13.213 28.918 32.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.303 5.303 17 C -0.079 4.079 18 C -0.003 4.003 19 N -0.365 5.365 20 C 0.393 3.607 21 O -0.374 6.374 22 C -0.127 4.127 23 N -0.185 5.185 24 C -0.100 4.100 25 N -0.121 5.121 26 H 0.299 0.701 27 N -0.119 5.119 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.176 0.824 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.242 0.758 44 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -7.282 -11.223 28.102 31.125 hybrid contribution 1.281 -1.991 0.289 2.385 sum -6.001 -13.214 28.392 31.886 Atomic orbital electron populations 1.22227 0.96808 1.01321 1.02432 1.21403 0.93512 0.84323 1.02532 1.48246 1.64044 1.13178 1.07700 1.19256 0.96161 0.93725 0.78083 1.21430 0.96976 1.31876 1.06219 0.92567 1.24941 0.97816 0.94945 0.96445 1.69932 1.35664 1.33381 1.14299 0.86504 0.84734 0.77642 0.78559 1.20713 1.21079 1.19949 1.20138 0.79015 0.87106 0.84852 1.90689 1.45034 1.17662 1.86889 1.21899 1.02408 0.94225 0.90400 1.59954 1.33211 1.37526 0.99568 1.22063 1.01863 0.95026 0.88995 1.21368 1.02727 0.96337 0.79864 1.45603 1.67859 1.17876 1.05171 1.16228 0.78549 0.85078 0.80818 1.90878 1.43998 1.16313 1.86178 1.23876 1.04872 0.88781 0.95164 1.71332 1.19578 1.29515 0.98111 1.26794 0.98880 0.82863 1.01461 1.45139 1.47282 1.16013 1.03705 0.70078 1.74245 1.19943 1.18445 0.99261 0.92262 0.93015 0.91990 0.89988 0.91956 0.95062 0.93832 0.92730 0.92783 0.88640 0.82422 0.94547 0.90191 0.89559 0.90707 0.75825 0.75168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.41 2.46 -175.06 -0.43 -12.84 16 4 C 0.25 6.44 5.16 -5.20 -0.03 6.42 16 5 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 13 C 0.50 10.28 7.71 -10.99 -0.08 10.20 16 14 O -0.53 -13.28 15.78 5.56 0.09 -13.19 16 15 C 0.04 0.61 4.72 -4.98 -0.02 0.59 16 16 N -0.67 -9.12 6.13 -115.06 -0.70 -9.82 16 17 C 0.05 0.48 5.80 -3.82 -0.02 0.46 16 18 C 0.12 1.25 5.93 -4.04 -0.02 1.22 16 19 N -0.71 -6.71 5.55 -61.24 -0.34 -7.05 16 20 C 0.61 7.56 7.83 -12.32 -0.10 7.47 16 21 O -0.50 -8.22 17.09 5.33 0.09 -8.13 16 22 C 0.15 1.63 7.96 -156.35 -1.24 0.39 16 23 N -0.46 -4.72 11.41 -12.37 -0.14 -4.86 16 24 C 0.20 0.87 13.14 -90.49 -1.19 -0.32 16 25 N -0.40 -1.38 6.93 29.56 0.20 -1.18 16 26 H 0.45 -0.48 8.96 -190.21 -1.71 -2.19 16 27 N -0.28 -2.07 11.98 32.07 0.38 -1.69 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 34 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.05 0.67 7.40 -51.93 -0.38 0.28 16 37 H 0.10 1.17 7.19 -51.93 -0.37 0.79 16 38 H 0.36 5.19 8.43 -39.29 -0.33 4.86 16 39 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.41 2.86 8.17 -40.82 -0.33 2.53 16 44 H 0.23 -0.23 8.06 -52.49 -0.42 -0.65 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -40.12 381.16 -9.73 -49.85 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.56 Total: -0.47 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: -2.78 Total: 12.64 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: -0.29 Total: -63.38 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: 0.18 Total: -21.31 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -40.12 -9.73 -49.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135521174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.503 kcal (2) G-P(sol) polarization free energy of solvation -40.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds