Wall clock time and date at job start Fri Apr 10 2020 18:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47253 * 2 1 4 4 C 1.46501 * 119.99687 * 269.99766 * 3 2 1 5 5 C 1.50695 * 109.47260 * 269.99610 * 4 3 2 6 6 H 1.07999 * 120.00039 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99963 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00007 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99889 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46718 * 90.00217 * 9 7 5 11 11 H 1.48497 * 109.47289 * 210.00496 * 9 7 5 12 12 H 1.48505 * 109.47283 * 330.00870 * 9 7 5 13 13 C 1.34773 * 120.00291 * 89.99763 * 3 2 1 14 14 O 1.21280 * 120.00260 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00030 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47345 * 180.02562 * 15 13 3 17 17 C 1.46901 * 111.00158 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47218 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.46966 * 180.02562 * 18 17 16 20 20 C 1.34778 * 119.99592 * 180.02562 * 19 18 17 21 21 O 1.21546 * 120.00331 * 359.97438 * 20 19 18 22 22 C 1.47871 * 119.99736 * 179.97438 * 20 19 18 23 23 N 1.34549 * 126.05131 * 179.97438 * 22 20 19 24 24 C 1.30862 * 107.27315 * 180.02562 * 23 22 20 25 25 N 1.34584 * 107.62652 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.75481 * 179.73959 * 25 24 23 27 27 N 1.28852 * 108.50061 * 359.97438 * 25 24 23 28 28 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47239 * 300.00376 * 1 2 3 30 30 H 1.09000 * 109.46911 * 60.00078 * 1 2 3 31 31 H 1.09002 * 109.47229 * 240.00096 * 2 1 3 32 32 H 1.09000 * 109.46911 * 119.99922 * 2 1 3 33 33 H 1.08996 * 109.47667 * 30.00206 * 4 3 2 34 34 H 1.09002 * 109.47377 * 149.99956 * 4 3 2 35 35 H 0.96999 * 119.99849 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46672 * 59.99568 * 15 13 3 37 37 H 1.08997 * 109.46771 * 300.00360 * 15 13 3 38 38 H 1.00905 * 111.00226 * 303.95194 * 16 15 13 39 39 H 1.08996 * 109.47268 * 60.00148 * 17 16 15 40 40 H 1.09001 * 109.47290 * 300.00163 * 17 16 15 41 41 H 1.08996 * 109.46857 * 59.99925 * 18 17 16 42 42 H 1.09001 * 109.47147 * 300.00280 * 18 17 16 43 43 H 0.97001 * 120.00109 * 359.97438 * 19 18 17 44 44 H 1.07997 * 126.19071 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8780 8 7 3.3491 3.1255 -3.6182 9 14 5.9132 2.0954 -3.4175 10 1 5.9760 0.8742 -4.2601 11 1 6.3924 3.2625 -4.2008 12 1 6.7736 1.9156 -2.2205 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9923 1.3061 2.4723 16 7 2.3098 2.2063 3.5888 17 6 2.0762 1.5461 4.8801 18 6 2.4177 2.5125 6.0161 19 7 2.1854 1.8539 7.3039 20 6 2.4198 2.5187 8.4527 21 8 2.8244 3.6644 8.4203 22 6 2.1848 1.8541 9.7526 23 7 2.3777 2.3998 10.9672 24 6 2.0578 1.4937 11.8556 25 7 1.6687 0.3904 11.1904 26 1 1.3786 -0.4424 11.5945 27 7 1.7511 0.6248 9.9260 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1386 35 1 3.6752 3.5159 -4.4441 36 1 2.6228 0.4188 2.5298 37 1 0.9445 1.0115 2.5301 38 1 3.2579 2.5451 3.5218 39 1 2.7073 0.6606 4.9549 40 1 1.0289 1.2532 4.9543 41 1 1.7869 3.3983 5.9415 42 1 3.4651 2.8051 5.9417 43 1 1.8621 0.9397 7.3298 44 1 2.0994 1.6099 12.9285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135521174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:01 Heat of formation + Delta-G solvation = -8.120992 kcal Electronic energy + Delta-G solvation = -26096.217161 eV Core-core repulsion = 22084.504255 eV Total energy + Delta-G solvation = -4011.712906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.47724 -40.77371 -40.57863 -37.62281 -36.84431 -35.49718 -34.85102 -34.46443 -32.70796 -31.62432 -30.72224 -29.12126 -27.04099 -25.42259 -24.55935 -23.93181 -23.65993 -23.04391 -21.60220 -20.03515 -19.79999 -18.63641 -18.50828 -17.79179 -17.54861 -17.43706 -17.13640 -16.98133 -16.30983 -16.22791 -15.78706 -15.39969 -15.27307 -14.90060 -14.61428 -14.53315 -14.39797 -14.11259 -13.50761 -13.44625 -13.25311 -13.20603 -13.04894 -12.66297 -12.64295 -12.48175 -12.41435 -12.13290 -11.83549 -11.80188 -11.70271 -11.70094 -11.43872 -10.80633 -10.63399 -10.55232 -10.25820 -9.43214 -9.37707 -8.21190 -6.36168 0.22378 1.14497 1.36029 1.39623 1.49530 1.53878 1.90029 1.96380 2.20983 2.30230 2.44744 3.07859 3.10119 3.35867 3.57352 3.74376 3.85016 4.06463 4.10453 4.15148 4.36749 4.41841 4.48351 4.53644 4.70492 4.83947 4.88522 4.91693 4.96621 5.03070 5.08586 5.17849 5.24597 5.25018 5.43405 5.59869 5.83555 5.93070 5.94261 6.08372 6.24955 6.29214 6.72465 6.86708 6.92074 7.06367 7.30227 7.55718 8.85647 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.001850 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.168460 B =15131.328461 C =15776.191111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.491 3.509 14 O -0.589 6.589 15 C 0.061 3.939 16 N -0.692 5.692 17 C 0.062 3.938 18 C 0.125 3.875 19 N -0.692 5.692 20 C 0.608 3.392 21 O -0.558 6.558 22 C 0.122 3.878 23 N -0.518 5.518 24 C 0.220 3.780 25 N -0.376 5.376 26 H 0.474 0.526 27 N -0.270 5.270 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.020 0.980 34 H -0.007 1.007 35 H 0.266 0.734 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.346 0.654 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.421 0.579 44 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.509 -17.075 31.379 36.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.279 3.721 14 O -0.469 6.469 15 C -0.070 4.070 16 N -0.325 5.325 17 C -0.067 4.067 18 C 0.001 3.999 19 N -0.346 5.346 20 C 0.391 3.609 21 O -0.433 6.433 22 C -0.158 4.158 23 N -0.244 5.244 24 C -0.077 4.077 25 N -0.103 5.103 26 H 0.326 0.674 27 N -0.114 5.114 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.038 0.962 34 H 0.011 0.989 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.143 0.857 38 H 0.165 0.835 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.259 0.741 44 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -7.632 -15.220 30.594 35.013 hybrid contribution 1.292 -0.859 -0.365 1.593 sum -6.341 -16.079 30.229 34.821 Atomic orbital electron populations 1.22161 0.94671 1.03475 1.01659 1.21762 0.95244 0.81245 1.04019 1.48276 1.64110 1.15152 1.06108 1.18666 0.95213 0.91455 0.80616 1.21721 0.97918 1.31890 1.06442 0.92734 1.25892 1.02426 0.94533 0.96541 1.70061 1.37794 1.34237 1.14772 0.85402 0.78969 0.78140 0.78193 1.18732 1.20834 1.19740 1.21350 0.77385 0.86684 0.86652 1.90654 1.47698 1.20609 1.87935 1.21812 1.04720 0.93946 0.86556 1.59923 1.32826 1.38691 1.01066 1.22043 1.03561 0.94855 0.86283 1.21220 1.01581 0.96311 0.80806 1.45410 1.66775 1.18203 1.04197 1.16608 0.77632 0.84606 0.82093 1.90834 1.46698 1.18647 1.87101 1.23476 1.07685 0.89971 0.94645 1.71255 1.21947 1.32262 0.98911 1.27662 0.95896 0.81450 1.02676 1.45179 1.45714 1.16878 1.02497 0.67396 1.74140 1.19086 1.16917 1.01254 0.88540 0.91941 0.94662 0.91163 0.87768 0.96159 0.98868 0.92485 0.89639 0.85651 0.83504 0.92008 0.88138 0.91579 0.91970 0.74110 0.70146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 10.24 71.98 0.74 -3.03 16 2 C 0.10 2.86 5.93 86.38 0.51 3.37 16 3 N -0.60 -25.23 2.46 -826.17 -2.03 -27.26 16 4 C 0.26 14.35 5.16 85.63 0.44 14.79 16 5 C -0.54 -31.49 9.39 25.60 0.24 -31.25 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.00 0.28 5.46 84.66 0.46 0.75 16 8 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 9 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.49 20.11 7.71 87.66 0.68 20.79 16 14 O -0.59 -31.06 15.78 -3.03 -0.05 -31.11 16 15 C 0.06 1.57 4.72 85.56 0.40 1.98 16 16 N -0.69 -17.96 6.13 -517.95 -3.17 -21.13 16 17 C 0.06 1.02 5.80 86.30 0.50 1.52 16 18 C 0.12 2.57 5.93 86.38 0.51 3.08 16 19 N -0.69 -12.67 5.55 -465.95 -2.59 -15.26 16 20 C 0.61 15.45 7.83 86.79 0.68 16.13 16 21 O -0.56 -19.43 17.09 -3.86 -0.07 -19.50 16 22 C 0.12 2.53 7.96 137.13 1.09 3.62 16 23 N -0.52 -10.22 11.41 -193.04 -2.20 -12.42 16 24 C 0.22 1.29 13.14 180.30 2.37 3.66 16 25 N -0.38 -1.44 6.93 -60.38 -0.42 -1.86 16 26 H 0.47 -2.86 8.96 -219.80 -1.97 -4.83 16 27 N -0.27 -3.49 11.98 -52.44 -0.63 -4.11 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 32 H 0.10 2.14 6.44 -2.39 -0.02 2.12 16 33 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 34 H -0.01 -0.44 7.42 -2.39 -0.02 -0.45 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.09 1.71 7.40 -2.39 -0.02 1.69 16 37 H 0.13 2.50 7.19 -2.39 -0.02 2.49 16 38 H 0.35 10.13 8.43 -89.69 -0.76 9.37 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.42 5.11 8.17 -92.71 -0.76 4.35 16 44 H 0.28 -1.82 8.06 -2.91 -0.02 -1.84 16 Total: -1.00 -96.27 381.16 -2.63 -98.91 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -2.42 Total: 7.72 kcal Atomic # 6 Polarization: 26.78 SS G_CDS: 8.63 Total: 35.41 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -10.75 Total: -138.91 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.11 Total: -50.61 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -96.27 -2.63 -98.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135521174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.785 kcal (2) G-P(sol) polarization free energy of solvation -96.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds