Wall clock time and date at job start Fri Apr 10 2020 18:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00158 * 2 1 3 5 5 C 1.52996 * 109.47102 * 175.00294 * 4 2 1 6 6 H 1.09004 * 109.46864 * 304.99709 * 5 4 2 7 7 C 1.52999 * 109.47055 * 185.00210 * 5 4 2 8 8 N 1.46494 * 109.47190 * 65.00036 * 5 4 2 9 9 C 1.34784 * 119.99825 * 204.99816 * 8 5 4 10 10 O 1.21545 * 120.00103 * 0.02562 * 9 8 5 11 11 C 1.47870 * 119.99782 * 180.02562 * 9 8 5 12 12 N 1.34550 * 126.04955 * 359.69099 * 11 9 8 13 13 C 1.30866 * 107.27159 * 179.87100 * 12 11 9 14 14 N 1.34594 * 107.62227 * 0.38693 * 13 12 11 15 15 H 0.97000 * 125.74084 * 179.77095 * 14 13 12 16 16 N 1.28845 * 108.50247 * 359.75631 * 14 13 12 17 17 N 1.46902 * 109.47094 * 120.00779 * 2 1 3 18 18 C 1.46907 * 110.99670 * 275.00023 * 17 2 1 19 19 C 1.50700 * 109.46887 * 180.02562 * 18 17 2 20 20 O 1.21295 * 120.00159 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99561 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99515 * 180.02562 * 21 19 18 23 23 H 1.07995 * 120.00474 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99632 * 180.02562 * 22 21 19 25 25 N 1.31407 * 119.99996 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 120.00082 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.47030 * 90.00114 * 26 24 22 28 28 H 1.48492 * 109.47100 * 210.00199 * 26 24 22 29 29 H 1.48500 * 109.47005 * 330.00334 * 26 24 22 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 32 32 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 33 33 H 1.09000 * 109.47314 * 295.00428 * 4 2 1 34 34 H 1.09007 * 109.46744 * 55.00049 * 4 2 1 35 35 H 1.08999 * 109.47003 * 299.99954 * 7 5 4 36 36 H 1.09005 * 109.47162 * 59.99889 * 7 5 4 37 37 H 1.09003 * 109.47214 * 179.97438 * 7 5 4 38 38 H 0.96995 * 120.00043 * 24.99886 * 8 5 4 39 39 H 1.07995 * 126.19206 * 180.12226 * 13 12 11 40 40 H 1.00902 * 110.99990 * 38.94443 * 17 2 1 41 41 H 1.09000 * 109.46588 * 299.99934 * 18 17 2 42 42 H 1.08994 * 109.47385 * 59.99624 * 18 17 2 43 43 H 0.97000 * 120.00246 * 359.97438 * 21 19 18 44 44 H 0.96993 * 120.00156 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3343 -0.1825 9 6 5.3747 -0.9912 0.2732 10 8 5.9873 -0.0834 -0.2540 11 6 5.9693 -1.7193 1.4147 12 7 5.3996 -2.7343 2.0897 13 6 6.2428 -3.1042 3.0197 14 7 7.3275 -2.3130 2.9242 15 1 8.1135 -2.3584 3.4908 16 7 7.1459 -1.4856 1.9534 17 7 2.0196 -0.6927 1.1994 18 6 2.0824 0.2224 2.3469 19 6 2.5884 -0.5219 3.5557 20 8 2.8688 -1.6989 3.4698 21 7 2.7295 0.1204 4.7322 22 6 3.1904 -0.5565 5.8317 23 1 3.4400 -1.6045 5.7553 24 6 3.3353 0.1055 7.0448 25 7 3.7766 -0.5434 8.0988 26 14 2.9030 1.9179 7.1772 27 1 1.4736 2.0595 7.5542 28 1 3.7538 2.5553 8.2139 29 1 3.1376 2.5797 5.8686 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.7516 -1.7715 -1.2058 34 1 1.6053 -0.2616 -2.1370 35 1 3.7722 -2.2741 -2.6701 36 1 3.6263 -0.6885 -3.4658 37 1 5.1507 -1.1477 -2.6702 38 1 3.6646 -2.0585 0.2385 39 1 6.0935 -3.8976 3.7370 40 1 1.4494 -1.4980 1.4099 41 1 2.7588 1.0459 2.1183 42 1 1.0871 0.6161 2.5526 43 1 2.5057 1.0617 4.8008 44 1 3.8781 -0.0812 8.9455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135705839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:05 Heat of formation + Delta-G solvation = 23.338902 kcal Electronic energy + Delta-G solvation = -28920.914193 eV Core-core repulsion = 24910.565490 eV Total energy + Delta-G solvation = -4010.348703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.95619 -39.41513 -38.43316 -37.15742 -34.85072 -33.84747 -33.14740 -31.69000 -31.46728 -30.89562 -30.02210 -26.90485 -26.28974 -24.49542 -23.68787 -22.44125 -21.27087 -20.70860 -19.87374 -19.27048 -18.54812 -18.28870 -16.70715 -16.25138 -15.87966 -15.85086 -15.35827 -14.85312 -14.81444 -14.55339 -14.22873 -14.10658 -13.58248 -13.41124 -13.30680 -12.94248 -12.75338 -12.48104 -12.27906 -12.17114 -12.12113 -11.78555 -11.70014 -11.49702 -11.27660 -11.13364 -10.81395 -10.70592 -10.57808 -10.18618 -9.96616 -9.96245 -9.79928 -9.50096 -9.29189 -8.73486 -8.41286 -8.12333 -7.95251 -6.29709 -3.79071 1.83207 2.62456 2.91548 3.04908 3.07843 3.15955 3.56945 3.84467 3.91274 4.11859 4.17794 4.56566 4.63543 4.88619 5.01863 5.09107 5.18385 5.23885 5.25229 5.29733 5.39561 5.47978 5.55258 5.65270 5.72763 5.78861 5.81370 5.86360 5.96221 6.02859 6.08861 6.15769 6.29089 6.45616 6.72017 6.88334 7.10173 7.17966 7.61675 7.66273 7.95658 8.17277 8.45301 8.64410 8.69152 8.98902 9.47180 9.90582 10.83816 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.005087 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.034952 B = 5503.161059 C = 7288.202510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 H 0.076 0.924 4 C -0.115 4.115 5 C 0.153 3.847 6 H 0.083 0.917 7 C -0.165 4.165 8 N -0.672 5.672 9 C 0.622 3.378 10 O -0.545 6.545 11 C 0.147 3.853 12 N -0.446 5.446 13 C 0.203 3.797 14 N -0.405 5.405 15 H 0.447 0.553 16 N -0.265 5.265 17 N -0.655 5.655 18 C 0.049 3.951 19 C 0.451 3.549 20 O -0.541 6.541 21 N -0.599 5.599 22 C -0.296 4.296 23 H 0.118 0.882 24 C 0.039 3.961 25 N -0.887 5.887 26 Si 0.876 3.124 27 H -0.272 1.272 28 H -0.278 1.278 29 H -0.271 1.271 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.419 0.581 39 H 0.223 0.777 40 H 0.349 0.651 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.368 0.632 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 -1.635 -15.983 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 H 0.095 0.905 4 C -0.153 4.153 5 C 0.048 3.952 6 H 0.101 0.899 7 C -0.223 4.223 8 N -0.325 5.325 9 C 0.404 3.596 10 O -0.420 6.420 11 C -0.134 4.134 12 N -0.171 5.171 13 C -0.095 4.095 14 N -0.127 5.127 15 H 0.293 0.707 16 N -0.105 5.105 17 N -0.287 5.287 18 C -0.084 4.084 19 C 0.237 3.763 20 O -0.421 6.421 21 N -0.240 5.240 22 C -0.424 4.424 23 H 0.136 0.864 24 C -0.163 4.163 25 N -0.528 5.528 26 Si 0.703 3.297 27 H -0.198 1.198 28 H -0.203 1.203 29 H -0.196 1.196 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.258 0.742 39 H 0.239 0.761 40 H 0.169 0.831 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.200 0.800 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.593 -1.349 -16.772 16.836 hybrid contribution -1.040 1.180 1.703 2.319 sum -1.632 -0.169 -15.068 15.157 Atomic orbital electron populations 1.22514 0.97410 1.02208 1.01992 1.21644 0.92194 0.98248 0.90963 0.90528 1.21921 0.94301 1.01772 0.97308 1.20794 0.92074 0.97243 0.85129 0.89912 1.22220 1.02157 1.01067 0.96878 1.45522 1.16526 1.37590 1.32831 1.16228 0.81559 0.81701 0.80130 1.90757 1.62292 1.30275 1.58687 1.23697 0.90494 0.98256 1.00944 1.71378 1.27006 1.12010 1.06684 1.26542 0.84042 0.98740 1.00220 1.45190 1.18545 1.24236 1.24768 0.70717 1.74229 1.19973 1.14066 1.02229 1.60220 1.57206 1.08967 1.02322 1.21701 0.99530 0.95904 0.91267 1.19741 0.84503 0.88535 0.83569 1.90612 1.52379 1.15198 1.83872 1.42222 1.61094 1.10979 1.09706 1.19354 1.39794 0.97681 0.85601 0.86419 1.24987 0.97788 0.98112 0.95366 1.69604 1.45994 1.36434 1.00789 0.86722 0.79192 0.85403 0.78389 1.19763 1.20334 1.19627 0.92284 0.92689 0.92306 0.90975 0.90276 0.92482 0.91953 0.92114 0.74228 0.76066 0.83090 0.90161 0.94114 0.80014 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.16 37.16 0.34 -1.31 16 2 C 0.08 0.84 2.59 -67.71 -0.18 0.67 16 3 H 0.08 0.86 7.80 -51.93 -0.41 0.46 16 4 C -0.11 -1.05 4.54 -26.73 -0.12 -1.17 16 5 C 0.15 1.79 2.57 -67.94 -0.17 1.62 16 6 H 0.08 1.11 7.58 -51.93 -0.39 0.72 16 7 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 8 N -0.67 -9.87 3.80 -54.75 -0.21 -10.08 16 9 C 0.62 11.43 7.80 -12.31 -0.10 11.34 16 10 O -0.54 -11.24 16.75 5.33 0.09 -11.16 16 11 C 0.15 2.78 7.96 -156.35 -1.24 1.54 16 12 N -0.45 -8.04 11.06 -12.36 -0.14 -8.18 16 13 C 0.20 3.03 13.14 -90.48 -1.19 1.84 16 14 N -0.41 -5.73 6.93 29.56 0.20 -5.53 16 15 H 0.45 4.34 8.96 -190.21 -1.71 2.64 16 16 N -0.26 -4.83 12.30 32.07 0.39 -4.44 16 17 N -0.65 -9.04 3.48 -107.99 -0.38 -9.42 16 18 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 19 C 0.45 9.81 7.82 -10.98 -0.09 9.72 16 20 O -0.54 -13.03 15.75 5.54 0.09 -12.94 16 21 N -0.60 -14.14 5.09 -10.96 -0.06 -14.19 16 22 C -0.30 -8.15 10.16 -14.93 -0.15 -8.30 16 23 H 0.12 3.66 7.39 -52.49 -0.39 3.27 16 24 C 0.04 1.07 5.50 -17.47 -0.10 0.98 16 25 N -0.89 -25.56 13.96 55.50 0.77 -24.78 16 26 Si 0.88 19.73 27.74 -169.99 -4.71 15.02 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.27 -5.72 6.52 56.52 0.37 -5.35 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.05 0.54 7.45 -51.93 -0.39 0.16 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.42 6.28 7.30 -40.82 -0.30 5.98 16 39 H 0.22 2.44 8.06 -52.49 -0.42 2.01 16 40 H 0.35 4.97 8.17 -39.29 -0.32 4.65 16 41 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 42 H 0.04 0.59 7.44 -51.93 -0.39 0.21 16 43 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 44 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -35.43 373.52 -8.47 -43.90 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -7.49 Total: 19.80 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: -2.67 Total: 16.36 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: 0.60 Total: -76.61 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.18 Total: -24.10 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.71 Total: 15.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.43 -8.47 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135705839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.240 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds