Wall clock time and date at job start Fri Apr 10 2020 18:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47142 * 2 1 4 4 C 1.53001 * 109.46790 * 239.99878 * 2 1 3 5 5 C 1.53000 * 109.46786 * 175.00393 * 4 2 1 6 6 H 1.09003 * 109.46980 * 304.99719 * 5 4 2 7 7 C 1.52995 * 109.47134 * 184.99812 * 5 4 2 8 8 N 1.46906 * 109.47281 * 64.99922 * 5 4 2 9 9 C 1.46901 * 110.99793 * 205.00148 * 8 5 4 10 10 C 1.50701 * 109.46921 * 179.97438 * 9 8 5 11 11 O 1.21294 * 119.99849 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99707 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99704 * 359.97438 * 13 12 10 15 15 C 1.38941 * 119.99927 * 180.02562 * 13 12 10 16 16 N 1.31418 * 120.00215 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00009 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47177 * 89.99959 * 17 15 13 19 19 H 1.48505 * 109.47036 * 210.00243 * 17 15 13 20 20 H 1.48499 * 109.46776 * 329.99732 * 17 15 13 21 21 N 1.46500 * 109.46735 * 120.00061 * 2 1 3 22 22 C 1.34778 * 119.99816 * 274.99431 * 21 2 1 23 23 O 1.21557 * 120.00176 * 0.02562 * 22 21 2 24 24 C 1.47866 * 119.99991 * 180.02562 * 22 21 2 25 25 N 1.34545 * 126.05022 * 180.02562 * 24 22 21 26 26 C 1.30869 * 107.27147 * 180.02562 * 25 24 22 27 27 N 1.34578 * 107.62456 * 0.02562 * 26 25 24 28 28 H 0.97004 * 125.74755 * 179.97438 * 27 26 25 29 29 N 1.28851 * 108.50443 * 359.72879 * 27 26 25 30 30 H 1.08999 * 109.46965 * 59.99986 * 1 2 3 31 31 H 1.08997 * 109.47803 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47021 * 300.00228 * 1 2 3 33 33 H 1.08996 * 109.47160 * 54.99990 * 4 2 1 34 34 H 1.09003 * 109.46780 * 295.00039 * 4 2 1 35 35 H 1.09001 * 109.47056 * 59.99890 * 7 5 4 36 36 H 1.09000 * 109.47395 * 179.97438 * 7 5 4 37 37 H 1.09003 * 109.47112 * 299.99827 * 7 5 4 38 38 H 1.00899 * 110.99995 * 81.04546 * 8 5 4 39 39 H 1.09002 * 109.47401 * 59.99808 * 9 8 5 40 40 H 1.09001 * 109.46874 * 299.99821 * 9 8 5 41 41 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 42 42 H 0.96996 * 119.99520 * 179.97438 * 16 15 13 43 43 H 0.96994 * 120.00109 * 95.00022 * 21 2 1 44 44 H 1.08004 * 126.19043 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1552 -1.3363 -0.1792 9 6 5.4833 -0.8026 0.1513 10 6 6.0558 -1.5667 1.3173 11 8 5.4201 -2.4677 1.8228 12 7 7.2745 -1.2497 1.7976 13 6 7.7955 -1.9452 2.8580 14 1 7.2292 -2.7469 3.3086 15 6 9.0517 -1.6181 3.3536 16 7 9.5509 -2.2845 4.3703 17 14 10.0309 -0.2311 2.5746 18 1 9.7035 1.0482 3.2539 19 1 11.4827 -0.5096 2.7166 20 1 9.6850 -0.1294 1.1340 21 7 2.0183 -0.6906 1.1962 22 6 2.1470 -0.0182 2.3571 23 8 1.8576 1.1611 2.4118 24 6 2.6404 -0.7151 3.5644 25 7 2.8145 -0.1658 4.7801 26 6 3.2633 -1.1069 5.5711 27 7 3.3664 -2.2350 4.8445 28 1 3.6743 -3.0943 5.1728 29 7 2.9824 -1.9826 3.6407 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -0.2618 -2.1369 34 1 1.7515 -1.7716 -1.2055 35 1 3.6264 -0.6888 -3.4657 36 1 5.1507 -1.1479 -2.6701 37 1 3.7722 -2.2743 -2.6698 38 1 4.1997 -2.3270 -0.3654 39 1 5.3959 0.2513 0.4158 40 1 6.1419 -0.9074 -0.7109 41 1 7.7829 -0.5295 1.3931 42 1 10.4280 -2.0562 4.7160 43 1 2.2489 -1.6317 1.1527 44 1 3.5076 -0.9978 6.6175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135705840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:09 Heat of formation + Delta-G solvation = 22.012457 kcal Electronic energy + Delta-G solvation = -28935.905901 eV Core-core repulsion = 24925.499679 eV Total energy + Delta-G solvation = -4010.406222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.95252 -39.42164 -38.47701 -37.18094 -34.87458 -33.89942 -32.91009 -32.04293 -31.64973 -30.86861 -29.84386 -26.92552 -26.33144 -24.45013 -23.73146 -22.52107 -21.27090 -20.74237 -19.89032 -19.33184 -18.45515 -18.31734 -16.96771 -16.18846 -15.97246 -15.82643 -15.31150 -14.88929 -14.72418 -14.53406 -14.30923 -14.12496 -13.66562 -13.43290 -13.37158 -12.98908 -12.76650 -12.50190 -12.31730 -12.18713 -12.14845 -11.80565 -11.69305 -11.54734 -11.29902 -11.15370 -10.83918 -10.72122 -10.60390 -10.24302 -10.06026 -10.00754 -9.73642 -9.55265 -9.24464 -8.76642 -8.47879 -8.17107 -8.00024 -6.33881 -3.83768 1.90520 2.54377 3.01736 3.06093 3.07114 3.14523 3.39961 3.78269 3.90668 4.08722 4.13977 4.56058 4.70850 4.85288 4.90987 4.99214 5.15075 5.21615 5.23479 5.28863 5.38678 5.46047 5.53406 5.62335 5.70438 5.76583 5.78902 5.83875 5.92531 5.99797 6.06345 6.13976 6.27910 6.44738 6.70234 6.86409 7.12280 7.14222 7.57283 7.61585 7.92551 8.11258 8.45113 8.59468 8.68782 8.93483 9.42131 9.84482 10.79467 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.005083 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.485947 B = 5507.516327 C = 7275.911876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 H 0.084 0.916 4 C -0.115 4.115 5 C 0.080 3.920 6 H 0.077 0.923 7 C -0.182 4.182 8 N -0.656 5.656 9 C 0.049 3.951 10 C 0.452 3.548 11 O -0.550 6.550 12 N -0.596 5.596 13 C -0.298 4.298 14 H 0.116 0.884 15 C 0.041 3.959 16 N -0.885 5.885 17 Si 0.877 3.123 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.271 1.271 21 N -0.678 5.678 22 C 0.622 3.378 23 O -0.537 6.537 24 C 0.138 3.862 25 N -0.471 5.471 26 C 0.185 3.815 27 N -0.388 5.388 28 H 0.450 0.550 29 N -0.232 5.232 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.348 0.652 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.369 0.631 42 H 0.272 0.728 43 H 0.415 0.585 44 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.465 1.183 -8.800 16.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.102 0.898 4 C -0.153 4.153 5 C -0.030 4.030 6 H 0.096 0.904 7 C -0.241 4.241 8 N -0.288 5.288 9 C -0.084 4.084 10 C 0.238 3.762 11 O -0.431 6.431 12 N -0.236 5.236 13 C -0.427 4.427 14 H 0.134 0.866 15 C -0.161 4.161 16 N -0.526 5.526 17 Si 0.704 3.296 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.196 1.196 21 N -0.331 5.331 22 C 0.404 3.596 23 O -0.412 6.412 24 C -0.142 4.142 25 N -0.196 5.196 26 C -0.113 4.113 27 N -0.111 5.111 28 H 0.296 0.704 29 N -0.073 5.073 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.168 0.832 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.201 0.799 42 H 0.083 0.917 43 H 0.254 0.746 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -14.421 1.829 -8.326 16.752 hybrid contribution 2.304 -0.239 -0.689 2.417 sum -12.116 1.590 -9.015 15.186 Atomic orbital electron populations 1.22220 0.95801 1.01984 1.02333 1.20788 0.92997 0.97381 0.84033 0.89839 1.21921 0.94828 1.01514 0.97039 1.21647 0.94296 0.98705 0.88389 0.90443 1.22512 1.01481 1.01462 0.98667 1.60221 1.21926 1.08264 1.38400 1.21703 0.90156 0.99753 0.96810 1.19724 0.82557 0.87175 0.86792 1.90568 1.59408 1.32113 1.61003 1.42216 1.16400 1.33342 1.31677 1.19314 1.00982 1.15528 1.06877 0.86601 1.24994 0.96818 0.97855 0.96476 1.69609 1.18313 1.40416 1.24263 0.86703 0.80643 0.82837 0.79400 1.19636 1.20258 1.19641 1.45575 1.65040 1.14987 1.07465 1.16238 0.77178 0.85169 0.81016 1.90757 1.50840 1.14943 1.84613 1.23684 1.07241 0.88392 0.94922 1.71196 1.17759 1.29865 1.00756 1.26525 1.01403 0.82563 1.00781 1.45073 1.45795 1.13801 1.06431 0.70360 1.74381 1.13738 1.17926 1.01281 0.91928 0.92551 0.92050 0.90234 0.91046 0.92255 0.92688 0.92317 0.83185 0.90004 0.94047 0.79904 0.91733 0.74636 0.76075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.48 37.16 0.35 -1.33 16 2 C 0.15 1.79 2.57 -67.93 -0.17 1.61 16 3 H 0.08 1.12 7.58 -51.93 -0.39 0.72 16 4 C -0.11 -1.03 4.54 -26.73 -0.12 -1.15 16 5 C 0.08 0.84 2.59 -67.71 -0.18 0.66 16 6 H 0.08 0.86 7.80 -51.93 -0.40 0.46 16 7 C -0.18 -1.63 9.16 37.16 0.34 -1.29 16 8 N -0.66 -8.93 3.48 -107.99 -0.38 -9.30 16 9 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 10 C 0.45 9.74 7.82 -10.98 -0.09 9.66 16 11 O -0.55 -13.08 15.78 5.55 0.09 -12.99 16 12 N -0.60 -13.98 5.09 -10.96 -0.06 -14.03 16 13 C -0.30 -8.18 10.16 -14.94 -0.15 -8.33 16 14 H 0.12 3.58 7.39 -52.49 -0.39 3.20 16 15 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 16 N -0.89 -25.35 13.96 55.50 0.77 -24.58 16 17 Si 0.88 19.64 27.74 -169.99 -4.71 14.92 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 21 N -0.68 -9.86 3.80 -54.74 -0.21 -10.07 16 22 C 0.62 11.50 7.80 -12.32 -0.10 11.41 16 23 O -0.54 -11.27 16.76 5.32 0.09 -11.18 16 24 C 0.14 2.63 7.96 -156.36 -1.24 1.39 16 25 N -0.47 -8.89 11.41 -12.37 -0.14 -9.03 16 26 C 0.19 2.68 13.14 -90.49 -1.19 1.49 16 27 N -0.39 -5.69 6.93 29.56 0.20 -5.49 16 28 H 0.45 5.10 8.96 -190.21 -1.71 3.39 16 29 N -0.23 -4.10 11.98 32.07 0.38 -3.71 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.54 7.45 -51.93 -0.39 0.15 16 37 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 38 H 0.35 4.88 8.17 -39.29 -0.32 4.55 16 39 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 40 H 0.04 0.60 7.44 -51.93 -0.39 0.21 16 41 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.42 6.08 7.29 -40.82 -0.30 5.78 16 44 H 0.22 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -35.57 373.58 -8.48 -44.05 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -7.49 Total: 19.90 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: -2.67 Total: 15.88 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: 0.58 Total: -76.21 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: 0.18 Total: -24.17 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.57 -8.48 -44.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135705840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.063 kcal (2) G-P(sol) polarization free energy of solvation -35.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds