Wall clock time and date at job start Fri Apr 10 2020 18:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 C 1.52999 * 109.46976 * 119.99687 * 2 1 3 5 5 C 1.52999 * 109.47222 * 185.00079 * 4 2 1 6 6 H 1.09007 * 109.47200 * 305.00115 * 5 4 2 7 7 C 1.52995 * 109.47524 * 185.00123 * 5 4 2 8 8 N 1.46499 * 109.47155 * 64.99979 * 5 4 2 9 9 C 1.34784 * 119.99971 * 205.00183 * 8 5 4 10 10 O 1.21552 * 120.00134 * 359.72723 * 9 8 5 11 11 C 1.47871 * 119.99878 * 179.97438 * 9 8 5 12 12 N 1.34550 * 126.04771 * 179.97438 * 11 9 8 13 13 C 1.30864 * 107.26911 * 179.97438 * 12 11 9 14 14 N 1.34590 * 107.62789 * 359.97438 * 13 12 11 15 15 H 0.96998 * 125.75413 * 180.02562 * 14 13 12 16 16 N 1.28853 * 108.49945 * 359.75647 * 14 13 12 17 17 N 1.46896 * 109.47335 * 239.99710 * 2 1 3 18 18 C 1.46903 * 111.00240 * 84.99865 * 17 2 1 19 19 C 1.50696 * 109.47125 * 180.02562 * 18 17 2 20 20 O 1.21293 * 120.00355 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99621 * 180.02562 * 19 18 17 22 22 C 1.37105 * 120.00098 * 179.97438 * 21 19 18 23 23 H 1.07993 * 119.99709 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00141 * 179.97438 * 22 21 19 25 25 N 1.31409 * 119.99738 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99801 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47318 * 89.99911 * 26 24 22 28 28 H 1.48504 * 109.47027 * 209.99787 * 26 24 22 29 29 H 1.48503 * 109.47376 * 329.99476 * 26 24 22 30 30 H 1.09001 * 109.47295 * 60.00578 * 1 2 3 31 31 H 1.09000 * 109.47041 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46996 * 300.00218 * 1 2 3 33 33 H 1.09002 * 109.47308 * 65.00180 * 4 2 1 34 34 H 1.08995 * 109.47507 * 305.00361 * 4 2 1 35 35 H 1.08996 * 109.47227 * 299.99947 * 7 5 4 36 36 H 1.09005 * 109.47314 * 59.99924 * 7 5 4 37 37 H 1.09001 * 109.47831 * 179.97438 * 7 5 4 38 38 H 0.96999 * 119.99984 * 25.00030 * 8 5 4 39 39 H 1.07996 * 126.19352 * 179.97438 * 13 12 11 40 40 H 1.00908 * 111.00156 * 321.04756 * 17 2 1 41 41 H 1.08998 * 109.46900 * 300.00405 * 18 17 2 42 42 H 1.08996 * 109.46908 * 59.99683 * 18 17 2 43 43 H 0.97003 * 120.00244 * 359.97438 * 21 19 18 44 44 H 0.96999 * 119.99655 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 1 3.9954 -0.9922 0.3869 7 6 4.0851 -1.4382 2.4925 8 7 3.9479 0.7894 1.4925 9 6 5.1612 1.2136 1.0867 10 8 5.9394 0.4312 0.5770 11 6 5.5477 2.6295 1.2666 12 7 6.7215 3.1815 0.9088 13 6 6.6707 4.4478 1.2348 14 7 5.4674 4.6772 1.7924 15 1 5.1521 5.5305 2.1291 16 7 4.8025 3.5735 1.7985 17 7 2.0197 -0.6925 -1.1993 18 6 2.0825 0.2225 -2.3469 19 6 2.5874 -0.5220 -3.5559 20 8 2.8679 -1.6990 -3.4701 21 7 2.7283 0.1202 -4.7324 22 6 3.1882 -0.5569 -5.8323 23 1 3.4371 -1.6050 -5.7560 24 6 3.3329 0.1051 -7.0454 25 7 3.7732 -0.5441 -8.0997 26 14 2.9017 1.9178 -7.1774 27 1 4.1026 2.7360 -6.8711 28 1 2.4373 2.2171 -8.5559 29 1 1.8222 2.2416 -6.2103 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -1.7715 1.2057 34 1 1.6053 -0.2617 2.1370 35 1 3.6546 -1.0592 3.4194 36 1 3.8001 -2.4818 2.3596 37 1 5.1715 -1.3617 2.5383 38 1 3.3284 1.4129 1.9028 39 1 7.4528 5.1771 1.0838 40 1 1.4496 -1.4980 -1.4100 41 1 1.0871 0.6162 -2.5525 42 1 2.7588 1.0461 -2.1182 43 1 2.5044 1.0615 -4.8010 44 1 3.8746 -0.0819 -8.9464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135705841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:12 Heat of formation + Delta-G solvation = 19.299510 kcal Electronic energy + Delta-G solvation = -27596.002563 eV Core-core repulsion = 23585.478699 eV Total energy + Delta-G solvation = -4010.523864 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.74650 -39.72434 -38.52346 -37.26467 -35.14902 -33.86443 -33.68286 -32.42016 -31.62009 -31.13813 -30.19951 -26.90738 -26.32447 -25.04113 -23.67412 -23.24757 -21.54851 -20.75157 -20.36312 -19.33260 -19.17663 -18.29032 -17.57140 -16.63256 -16.34174 -15.79069 -15.53209 -15.12012 -14.85660 -14.70585 -14.67035 -14.27742 -13.87270 -13.52308 -13.46756 -12.98236 -12.78686 -12.53171 -12.48234 -12.30355 -12.25904 -12.12238 -11.85543 -11.56673 -11.16269 -11.10887 -10.99990 -10.85911 -10.78448 -10.72988 -10.54743 -10.15573 -10.02986 -9.90986 -9.50016 -9.07448 -8.50736 -8.11378 -8.03040 -6.24285 -3.74973 1.08828 1.91115 2.28053 2.84862 3.06144 3.11674 3.18574 3.31319 3.82588 4.02749 4.14844 4.17628 4.20190 4.55212 4.65975 4.87087 4.98706 5.12394 5.27387 5.30655 5.34861 5.45153 5.54007 5.62089 5.65888 5.68952 5.73192 5.80334 5.87109 5.92773 5.97675 6.05012 6.09365 6.18139 6.33639 6.34801 6.52205 7.19188 7.33868 7.65148 7.67829 7.73595 8.17641 8.22461 8.67302 9.02543 9.50012 9.90980 10.89152 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.003666 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.577855 B = 7636.744616 C = 9270.633573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 H 0.076 0.924 4 C -0.111 4.111 5 C 0.145 3.855 6 H 0.114 0.886 7 C -0.163 4.163 8 N -0.706 5.706 9 C 0.610 3.390 10 O -0.497 6.497 11 C 0.157 3.843 12 N -0.460 5.460 13 C 0.196 3.804 14 N -0.401 5.401 15 H 0.451 0.549 16 N -0.281 5.281 17 N -0.659 5.659 18 C 0.051 3.949 19 C 0.452 3.548 20 O -0.562 6.562 21 N -0.592 5.592 22 C -0.302 4.302 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.883 5.883 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.271 1.271 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.401 0.599 39 H 0.231 0.769 40 H 0.351 0.649 41 H 0.042 0.958 42 H 0.083 0.917 43 H 0.369 0.631 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 14.092 25.484 29.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.031 4.031 3 H 0.094 0.906 4 C -0.150 4.150 5 C 0.041 3.959 6 H 0.132 0.868 7 C -0.222 4.222 8 N -0.359 5.359 9 C 0.390 3.610 10 O -0.366 6.366 11 C -0.124 4.124 12 N -0.184 5.184 13 C -0.102 4.102 14 N -0.124 5.124 15 H 0.297 0.703 16 N -0.123 5.123 17 N -0.291 5.291 18 C -0.082 4.082 19 C 0.237 3.763 20 O -0.443 6.443 21 N -0.232 5.232 22 C -0.431 4.431 23 H 0.138 0.862 24 C -0.161 4.161 25 N -0.523 5.523 26 Si 0.705 3.295 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.197 1.197 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.235 0.765 39 H 0.247 0.753 40 H 0.171 0.829 41 H 0.060 0.940 42 H 0.101 0.899 43 H 0.202 0.798 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.452 12.275 25.080 28.031 hybrid contribution -1.561 2.967 -0.177 3.358 sum -4.013 15.243 24.903 29.472 Atomic orbital electron populations 1.22534 0.97417 1.02339 1.01992 1.21618 0.92173 0.98200 0.91087 0.90580 1.21867 0.94055 1.02278 0.96791 1.21106 0.94777 0.79288 1.00716 0.86796 1.22192 1.01980 1.00251 0.97735 1.45806 1.15749 1.12054 1.62311 1.16288 0.82628 0.83033 0.79022 1.90894 1.50667 1.53515 1.41542 1.24038 0.89492 0.96230 1.02637 1.71355 1.21382 1.05238 1.20389 1.26784 0.90641 0.95400 0.97377 1.45123 1.12469 1.10592 1.44197 0.70305 1.74220 1.23350 0.93314 1.21396 1.60145 1.57654 1.08973 1.02368 1.21692 0.99598 0.95855 0.91089 1.19715 0.84562 0.88264 0.83709 1.90565 1.53576 1.15991 1.84198 1.42204 1.60330 1.11042 1.09631 1.19443 1.39904 0.98019 0.85739 0.86250 1.25018 0.97604 0.98253 0.95272 1.69622 1.45431 1.36434 1.00812 0.86688 0.78970 0.85457 0.78358 1.19625 1.20226 1.19651 0.92636 0.92177 0.92283 0.89813 0.91428 0.92957 0.91315 0.92135 0.76490 0.75309 0.82898 0.93968 0.89910 0.79835 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 9.16 37.16 0.34 -1.38 16 2 C 0.08 0.88 2.53 -67.72 -0.17 0.71 16 3 H 0.08 0.85 7.28 -51.93 -0.38 0.47 16 4 C -0.11 -1.05 4.43 -26.73 -0.12 -1.17 16 5 C 0.14 1.71 2.52 -67.93 -0.17 1.54 16 6 H 0.11 1.85 7.06 -51.92 -0.37 1.48 16 7 C -0.16 -1.70 9.48 37.16 0.35 -1.35 16 8 N -0.71 -8.13 4.45 -54.74 -0.24 -8.37 16 9 C 0.61 9.22 7.80 -12.31 -0.10 9.12 16 10 O -0.50 -9.75 16.76 5.32 0.09 -9.66 16 11 C 0.16 2.09 7.96 -156.35 -1.24 0.85 16 12 N -0.46 -6.07 11.41 -12.36 -0.14 -6.21 16 13 C 0.20 1.39 13.14 -90.48 -1.19 0.20 16 14 N -0.40 -2.33 6.93 29.56 0.20 -2.13 16 15 H 0.45 0.50 8.96 -190.21 -1.70 -1.20 16 16 N -0.28 -2.74 11.98 32.07 0.38 -2.35 16 17 N -0.66 -10.14 5.24 -108.00 -0.57 -10.70 16 18 C 0.05 0.88 5.97 -4.98 -0.03 0.85 16 19 C 0.45 10.74 7.82 -10.99 -0.09 10.66 16 20 O -0.56 -15.63 15.78 5.55 0.09 -15.54 16 21 N -0.59 -14.81 5.09 -10.96 -0.06 -14.86 16 22 C -0.30 -8.89 10.16 -14.93 -0.15 -9.04 16 23 H 0.12 4.00 7.39 -52.49 -0.39 3.61 16 24 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 25 N -0.88 -26.55 13.96 55.50 0.77 -25.78 16 26 Si 0.88 20.10 27.74 -169.99 -4.71 15.39 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -5.65 6.52 56.52 0.37 -5.28 16 30 H 0.05 0.56 7.45 -51.93 -0.39 0.18 16 31 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.40 3.61 8.30 -40.82 -0.34 3.27 16 39 H 0.23 0.40 8.06 -52.49 -0.42 -0.02 16 40 H 0.35 5.56 8.17 -39.29 -0.32 5.24 16 41 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 42 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 43 H 0.37 8.17 5.76 -40.82 -0.24 7.93 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -40.19 375.75 -8.65 -48.84 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -7.47 Total: 13.67 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -2.66 Total: 12.05 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: 0.36 Total: -70.41 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: 0.18 Total: -25.20 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.71 Total: 15.39 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -40.19 -8.65 -48.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135705841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.140 kcal (2) G-P(sol) polarization free energy of solvation -40.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds