Wall clock time and date at job start Fri Apr 10 2020 18:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 C 1.52999 * 109.46976 * 119.99687 * 2 1 3 5 5 C 1.52999 * 109.47222 * 185.00079 * 4 2 1 6 6 H 1.09007 * 109.47200 * 305.00115 * 5 4 2 7 7 C 1.52995 * 109.47524 * 185.00123 * 5 4 2 8 8 N 1.46499 * 109.47155 * 64.99979 * 5 4 2 9 9 C 1.34784 * 119.99971 * 205.00183 * 8 5 4 10 10 O 1.21552 * 120.00134 * 359.72723 * 9 8 5 11 11 C 1.47871 * 119.99878 * 179.97438 * 9 8 5 12 12 N 1.34550 * 126.04771 * 179.97438 * 11 9 8 13 13 C 1.30864 * 107.26911 * 179.97438 * 12 11 9 14 14 N 1.34590 * 107.62789 * 359.97438 * 13 12 11 15 15 H 0.96998 * 125.75413 * 180.02562 * 14 13 12 16 16 N 1.28853 * 108.49945 * 359.75647 * 14 13 12 17 17 N 1.46896 * 109.47335 * 239.99710 * 2 1 3 18 18 C 1.46903 * 111.00240 * 84.99865 * 17 2 1 19 19 C 1.50696 * 109.47125 * 180.02562 * 18 17 2 20 20 O 1.21293 * 120.00355 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99621 * 180.02562 * 19 18 17 22 22 C 1.37105 * 120.00098 * 179.97438 * 21 19 18 23 23 H 1.07993 * 119.99709 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00141 * 179.97438 * 22 21 19 25 25 N 1.31409 * 119.99738 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99801 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47318 * 89.99911 * 26 24 22 28 28 H 1.48504 * 109.47027 * 209.99787 * 26 24 22 29 29 H 1.48503 * 109.47376 * 329.99476 * 26 24 22 30 30 H 1.09001 * 109.47295 * 60.00578 * 1 2 3 31 31 H 1.09000 * 109.47041 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46996 * 300.00218 * 1 2 3 33 33 H 1.09002 * 109.47308 * 65.00180 * 4 2 1 34 34 H 1.08995 * 109.47507 * 305.00361 * 4 2 1 35 35 H 1.08996 * 109.47227 * 299.99947 * 7 5 4 36 36 H 1.09005 * 109.47314 * 59.99924 * 7 5 4 37 37 H 1.09001 * 109.47831 * 179.97438 * 7 5 4 38 38 H 0.96999 * 119.99984 * 25.00030 * 8 5 4 39 39 H 1.07996 * 126.19352 * 179.97438 * 13 12 11 40 40 H 1.00908 * 111.00156 * 321.04756 * 17 2 1 41 41 H 1.08998 * 109.46900 * 300.00405 * 18 17 2 42 42 H 1.08996 * 109.46908 * 59.99683 * 18 17 2 43 43 H 0.97003 * 120.00244 * 359.97438 * 21 19 18 44 44 H 0.96999 * 119.99655 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 1 3.9954 -0.9922 0.3869 7 6 4.0851 -1.4382 2.4925 8 7 3.9479 0.7894 1.4925 9 6 5.1612 1.2136 1.0867 10 8 5.9394 0.4312 0.5770 11 6 5.5477 2.6295 1.2666 12 7 6.7215 3.1815 0.9088 13 6 6.6707 4.4478 1.2348 14 7 5.4674 4.6772 1.7924 15 1 5.1521 5.5305 2.1291 16 7 4.8025 3.5735 1.7985 17 7 2.0197 -0.6925 -1.1993 18 6 2.0825 0.2225 -2.3469 19 6 2.5874 -0.5220 -3.5559 20 8 2.8679 -1.6990 -3.4701 21 7 2.7283 0.1202 -4.7324 22 6 3.1882 -0.5569 -5.8323 23 1 3.4371 -1.6050 -5.7560 24 6 3.3329 0.1051 -7.0454 25 7 3.7732 -0.5441 -8.0997 26 14 2.9017 1.9178 -7.1774 27 1 4.1026 2.7360 -6.8711 28 1 2.4373 2.2171 -8.5559 29 1 1.8222 2.2416 -6.2103 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -1.7715 1.2057 34 1 1.6053 -0.2617 2.1370 35 1 3.6546 -1.0592 3.4194 36 1 3.8001 -2.4818 2.3596 37 1 5.1715 -1.3617 2.5383 38 1 3.3284 1.4129 1.9028 39 1 7.4528 5.1771 1.0838 40 1 1.4496 -1.4980 -1.4100 41 1 1.0871 0.6162 -2.5525 42 1 2.7588 1.0461 -2.1182 43 1 2.5044 1.0615 -4.8010 44 1 3.8746 -0.0819 -8.9464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135705841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:11 Heat of formation + Delta-G solvation = -15.551741 kcal Electronic energy + Delta-G solvation = -27597.513827 eV Core-core repulsion = 23585.478699 eV Total energy + Delta-G solvation = -4012.035128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.44630 -40.81348 -40.31330 -38.46330 -36.36754 -35.88541 -34.44212 -33.78821 -33.33184 -32.14269 -31.14822 -28.08976 -27.63501 -25.94976 -25.45672 -23.89200 -22.44481 -21.69099 -21.39491 -21.28629 -20.31080 -19.82338 -18.47644 -17.78866 -17.39889 -17.13871 -16.99246 -16.51788 -16.09473 -15.77866 -15.75811 -15.52615 -15.12726 -14.94177 -14.81110 -14.54192 -14.13351 -13.99722 -13.62707 -13.36629 -13.23150 -13.17078 -13.01046 -12.83211 -12.65897 -12.43996 -12.09399 -11.98824 -11.78480 -11.71825 -11.66833 -11.57357 -11.54167 -11.27820 -10.75464 -10.45755 -10.26731 -10.08305 -9.22218 -8.43237 -6.03978 0.28175 1.18712 1.25567 1.32719 1.40767 1.68228 1.93147 2.08617 2.20480 2.30405 2.73763 3.12656 3.22848 3.45044 3.57598 3.75263 4.04183 4.08998 4.11680 4.28502 4.35743 4.44024 4.52606 4.56417 4.61495 4.80713 4.85426 4.88282 4.92783 5.05299 5.15537 5.25914 5.29289 5.33747 5.40808 5.50346 5.55939 5.90497 5.96249 6.12069 6.43731 6.49261 6.58015 6.85868 7.01853 7.18717 7.37041 7.94015 8.74793 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.003666 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.577855 B = 7636.744616 C = 9270.633573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 H 0.079 0.921 4 C -0.102 4.102 5 C 0.144 3.856 6 H 0.063 0.937 7 C -0.157 4.157 8 N -0.685 5.685 9 C 0.603 3.397 10 O -0.561 6.561 11 C 0.123 3.877 12 N -0.522 5.522 13 C 0.217 3.783 14 N -0.377 5.377 15 H 0.474 0.526 16 N -0.268 5.268 17 N -0.679 5.679 18 C 0.068 3.932 19 C 0.447 3.553 20 O -0.611 6.611 21 N -0.592 5.592 22 C -0.330 4.330 23 H 0.054 0.946 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.964 3.036 27 H -0.260 1.260 28 H -0.270 1.270 29 H -0.232 1.232 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.416 0.584 39 H 0.281 0.719 40 H 0.346 0.654 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.388 0.612 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.037 18.806 28.105 34.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.029 4.029 3 H 0.097 0.903 4 C -0.140 4.140 5 C 0.040 3.960 6 H 0.082 0.918 7 C -0.215 4.215 8 N -0.338 5.338 9 C 0.386 3.614 10 O -0.435 6.435 11 C -0.157 4.157 12 N -0.248 5.248 13 C -0.080 4.080 14 N -0.103 5.103 15 H 0.325 0.675 16 N -0.112 5.112 17 N -0.312 5.312 18 C -0.064 4.064 19 C 0.235 3.765 20 O -0.495 6.495 21 N -0.234 5.234 22 C -0.460 4.460 23 H 0.072 0.928 24 C -0.213 4.213 25 N -0.574 5.574 26 Si 0.784 3.216 27 H -0.185 1.185 28 H -0.194 1.194 29 H -0.155 1.155 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.253 0.747 39 H 0.297 0.703 40 H 0.165 0.835 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.223 0.777 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.912 17.051 27.771 32.956 hybrid contribution -0.764 1.470 -0.915 1.892 sum -5.675 18.521 26.856 33.113 Atomic orbital electron populations 1.22449 0.95351 1.02714 1.03010 1.21737 0.93727 0.97937 0.89500 0.90306 1.21860 0.91760 1.02871 0.97541 1.21023 0.96470 0.79442 0.99027 0.91832 1.22127 1.00312 1.00697 0.98367 1.45668 1.14890 1.12212 1.61032 1.16715 0.82802 0.83777 0.78146 1.90848 1.52581 1.55452 1.44664 1.23631 0.90632 0.95930 1.05475 1.71268 1.22418 1.08236 1.22871 1.27623 0.91339 0.94287 0.94778 1.45153 1.11899 1.10546 1.42687 0.67457 1.74109 1.23120 0.93698 1.20224 1.60141 1.58939 1.09144 1.02992 1.21532 1.01062 0.95233 0.88598 1.21036 0.82501 0.88033 0.84938 1.90539 1.55122 1.18674 1.85197 1.42040 1.60703 1.11740 1.08928 1.19024 1.42449 0.96111 0.88370 0.92763 1.26112 0.96392 1.05001 0.93801 1.69804 1.46271 1.39554 1.01797 0.85377 0.80090 0.76516 0.79605 1.18509 1.19432 1.15499 0.93222 0.92181 0.89602 0.89470 0.87569 0.90140 0.90604 0.94846 0.74655 0.70347 0.83487 0.90527 0.88787 0.77682 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 9.16 71.98 0.66 -1.98 16 2 C 0.08 1.58 2.53 44.92 0.11 1.69 16 3 H 0.08 1.52 7.28 -2.39 -0.02 1.51 16 4 C -0.10 -1.68 4.43 30.59 0.14 -1.54 16 5 C 0.14 3.40 2.52 44.99 0.11 3.52 16 6 H 0.06 2.21 7.06 -2.38 -0.02 2.19 16 7 C -0.16 -3.24 9.48 71.98 0.68 -2.56 16 8 N -0.69 -15.42 4.45 -445.37 -1.98 -17.40 16 9 C 0.60 18.91 7.80 86.79 0.68 19.58 16 10 O -0.56 -23.82 16.76 -3.88 -0.07 -23.88 16 11 C 0.12 3.23 7.96 137.13 1.09 4.32 16 12 N -0.52 -13.54 11.41 -193.03 -2.20 -15.74 16 13 C 0.22 2.44 13.14 180.30 2.37 4.81 16 14 N -0.38 -3.09 6.93 -60.38 -0.42 -3.51 16 15 H 0.47 -1.01 8.96 -219.80 -1.97 -2.98 16 16 N -0.27 -4.59 11.98 -52.44 -0.63 -5.22 16 17 N -0.68 -20.61 5.24 -495.60 -2.60 -23.21 16 18 C 0.07 2.29 5.97 85.56 0.51 2.81 16 19 C 0.45 21.80 7.82 87.66 0.69 22.49 16 20 O -0.61 -36.07 15.78 -3.07 -0.05 -36.12 16 21 N -0.59 -29.99 5.09 -306.99 -1.56 -31.56 16 22 C -0.33 -20.43 10.16 84.04 0.85 -19.57 16 23 H 0.05 3.97 7.39 -2.91 -0.02 3.95 16 24 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 25 N -0.93 -58.31 13.96 21.66 0.30 -58.01 16 26 Si 0.96 40.66 27.74 68.60 1.90 42.56 16 27 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 29 H -0.23 -8.25 6.52 99.48 0.65 -7.60 16 30 H 0.05 0.82 7.45 -2.39 -0.02 0.80 16 31 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.42 6.57 8.30 -92.71 -0.77 5.80 16 39 H 0.28 -0.27 8.06 -2.91 -0.02 -0.30 16 40 H 0.35 11.01 8.17 -89.69 -0.73 10.27 16 41 H 0.08 2.08 7.44 -2.39 -0.02 2.06 16 42 H 0.09 2.99 8.05 -2.39 -0.02 2.97 16 43 H 0.39 16.44 5.76 -92.71 -0.53 15.91 16 44 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -99.90 375.75 -1.93 -101.82 By element: Atomic # 1 Polarization: 40.07 SS G_CDS: -2.99 Total: 37.09 kcal Atomic # 6 Polarization: 24.82 SS G_CDS: 8.36 Total: 33.18 kcal Atomic # 7 Polarization: -145.57 SS G_CDS: -9.09 Total: -154.66 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -0.11 Total: -60.00 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 1.90 Total: 42.56 kcal Total: -99.90 -1.93 -101.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135705841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.272 kcal (2) G-P(sol) polarization free energy of solvation -99.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds