Wall clock time and date at job start Fri Apr 10 2020 18:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99888 * 2 1 4 4 H 1.48509 * 109.46906 * 85.00985 * 3 2 1 5 5 H 1.48494 * 109.47215 * 205.01175 * 3 2 1 6 6 H 1.48503 * 109.47248 * 325.01439 * 3 2 1 7 7 C 1.38812 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99775 * 187.34285 * 7 2 1 9 9 N 1.36929 * 120.00060 * 7.35163 * 7 2 1 10 10 C 1.47138 * 125.58569 * 5.88515 * 9 7 2 11 11 C 1.54611 * 107.36438 * 180.93216 * 10 9 7 12 12 C 1.53649 * 102.72930 * 20.75331 * 11 10 9 13 13 C 1.52379 * 116.39954 * 197.07967 * 12 11 10 14 14 N 1.47891 * 85.59044 * 218.65105 * 13 12 11 15 15 C 1.34779 * 134.33827 * 203.48595 * 14 13 12 16 16 O 1.21277 * 119.99802 * 180.02562 * 15 14 13 17 17 C 1.50698 * 119.99997 * 0.02562 * 15 14 13 18 18 O 1.42902 * 109.46999 * 180.02562 * 17 15 14 19 19 C 1.42901 * 113.99755 * 179.97438 * 18 17 15 20 20 C 1.53001 * 109.46704 * 179.97438 * 19 18 17 21 21 H 1.09001 * 110.33161 * 307.24898 * 20 19 18 22 22 C 1.54483 * 110.37018 * 185.00052 * 20 19 18 23 23 C 1.54515 * 104.06371 * 217.18732 * 22 20 19 24 24 C 1.54476 * 104.05910 * 0.02562 * 23 22 20 25 25 O 1.44423 * 110.37466 * 69.61842 * 20 19 18 26 26 C 1.47890 * 91.31900 * 23.48273 * 14 13 12 27 27 C 1.47720 * 125.58813 * 185.58080 * 9 7 2 28 28 H 0.97002 * 120.00559 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.86602 * 300.37138 * 10 9 7 30 30 H 1.08995 * 109.86901 * 61.35273 * 10 9 7 31 31 H 1.09001 * 110.76065 * 139.06562 * 11 10 9 32 32 H 1.08995 * 110.75897 * 262.44553 * 11 10 9 33 33 H 1.08995 * 113.84786 * 332.81936 * 13 12 11 34 34 H 1.09003 * 113.85279 * 104.48046 * 13 12 11 35 35 H 1.09001 * 109.47045 * 300.00078 * 17 15 14 36 36 H 1.09001 * 109.47508 * 59.99801 * 17 15 14 37 37 H 1.09002 * 109.47160 * 299.99850 * 19 18 17 38 38 H 1.08993 * 109.47311 * 59.99947 * 19 18 17 39 39 H 1.09004 * 110.51254 * 335.83457 * 22 20 19 40 40 H 1.08998 * 110.51074 * 98.54195 * 22 20 19 41 41 H 1.09002 * 110.51045 * 118.64089 * 23 22 20 42 42 H 1.08994 * 110.50869 * 241.21952 * 23 22 20 43 43 H 1.08996 * 110.37303 * 142.80941 * 24 23 22 44 44 H 1.09004 * 110.37244 * 265.14392 * 24 23 22 45 45 H 1.08993 * 113.85329 * 222.34679 * 26 14 13 46 46 H 1.09007 * 113.96334 * 90.68735 * 26 14 13 47 47 H 1.09003 * 110.40613 * 276.33503 * 27 9 7 48 48 H 1.08999 * 110.40255 * 38.74819 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1073 1.3949 5 1 3.5964 1.4121 -0.5919 6 1 1.5042 2.6200 -0.8028 7 6 2.0102 -1.2021 0.0005 8 1 3.0836 -1.2058 0.1201 9 7 1.3341 -2.3832 -0.1507 10 6 -0.1017 -2.5164 -0.4433 11 6 -0.4224 -4.0278 -0.5019 12 6 0.7431 -4.6518 0.2810 13 6 0.9671 -6.1463 0.0860 14 7 1.2743 -6.1731 1.5324 15 6 1.9849 -6.9955 2.3294 16 8 2.0681 -6.7660 3.5174 17 6 2.6761 -8.2000 1.7444 18 8 3.3576 -8.9086 2.7815 19 6 4.0493 -10.0750 2.3309 20 6 4.7388 -10.7496 3.5185 21 1 5.3572 -10.0306 4.0558 22 6 5.5954 -11.9416 3.0369 23 6 5.4202 -13.0025 4.1465 24 6 4.4780 -12.3262 5.1668 25 8 3.7585 -11.3336 4.4038 26 6 0.4915 -4.9385 1.7563 27 6 1.9278 -3.7323 -0.0530 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6861 -2.0442 0.3463 30 1 -0.3292 -2.0500 -1.4018 31 1 -1.3735 -4.2402 -0.0136 32 1 -0.4286 -4.3817 -1.5328 33 1 0.0650 -6.6957 -0.1833 34 1 1.8194 -6.3850 -0.5502 35 1 1.9368 -8.8546 1.2828 36 1 3.3952 -7.8765 0.9918 37 1 3.3382 -10.7682 1.8814 38 1 4.7970 -9.7908 1.5906 39 1 5.2229 -12.3196 2.0847 40 1 6.6419 -11.6493 2.9497 41 1 4.9610 -13.9049 3.7429 42 1 6.3804 -13.2364 4.6062 43 1 3.7868 -13.0567 5.5871 44 1 5.0556 -11.8497 5.9589 45 1 0.9705 -4.2292 2.4312 46 1 -0.5564 -5.1164 1.9982 47 1 2.3786 -4.0188 -1.0031 48 1 2.6694 -3.7642 0.7452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148923036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:49 Heat of formation + Delta-G solvation = -55.831703 kcal Electronic energy + Delta-G solvation = -27441.833645 eV Core-core repulsion = 23499.299440 eV Total energy + Delta-G solvation = -3942.534205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.51771 -39.83513 -38.56696 -37.15442 -35.55094 -32.53353 -32.25217 -31.24758 -29.93857 -28.86928 -27.51298 -26.06398 -25.76080 -25.03355 -23.46742 -22.33833 -21.40982 -20.31849 -19.33841 -18.26647 -17.46576 -17.08408 -16.71865 -16.60349 -16.31807 -15.96495 -15.62234 -15.40096 -14.88290 -14.67487 -14.42517 -14.09798 -13.74637 -13.55572 -13.46370 -12.84647 -12.58239 -12.41090 -12.23248 -12.18415 -11.93302 -11.87145 -11.73196 -11.63264 -11.56263 -11.07133 -11.03743 -10.90810 -10.74590 -10.40148 -10.23413 -10.09824 -10.06095 -9.93185 -9.84793 -9.65917 -9.40614 -8.61734 -8.51073 -6.83293 -5.70123 -3.06414 2.57826 2.76249 3.40879 3.46448 3.48155 3.50831 3.57361 4.16240 4.34599 4.46881 4.48811 4.53709 4.68075 4.77181 4.84945 4.90704 4.94826 4.98084 5.07323 5.10833 5.14911 5.22530 5.28548 5.38500 5.45132 5.46296 5.51512 5.53290 5.56191 5.62341 5.67488 5.71085 5.91584 6.04584 6.16283 6.23577 6.46269 6.50000 6.51381 6.65933 6.70349 6.86506 7.46591 7.64653 7.82227 7.84486 8.26360 8.31558 9.20803 9.81419 10.46629 11.39134 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025419 B = 0.002077 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.286625 B =13474.890885 C =13933.482995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.171 3.829 11 C -0.130 4.130 12 C -0.104 4.104 13 C 0.111 3.889 14 N -0.642 5.642 15 C 0.533 3.467 16 O -0.524 6.524 17 C 0.052 3.948 18 O -0.356 6.356 19 C 0.067 3.933 20 C 0.077 3.923 21 H 0.080 0.920 22 C -0.148 4.148 23 C -0.155 4.155 24 C 0.041 3.959 25 O -0.361 6.361 26 C 0.134 3.866 27 C 0.161 3.839 28 H 0.252 0.748 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.025 0.975 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 -25.949 0.810 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.105 4.105 13 C -0.012 4.012 14 N -0.380 5.380 15 C 0.321 3.679 16 O -0.399 6.399 17 C -0.028 4.028 18 O -0.274 6.274 19 C -0.010 4.010 20 C 0.019 3.981 21 H 0.098 0.902 22 C -0.186 4.186 23 C -0.193 4.193 24 C -0.036 4.036 25 O -0.280 6.280 26 C 0.013 3.987 27 C 0.034 3.966 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.043 0.957 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.613 -25.612 1.820 26.514 hybrid contribution 0.630 0.650 -0.397 0.988 sum 7.243 -24.962 1.423 26.031 Atomic orbital electron populations 1.69943 1.04896 1.25016 1.56806 1.24800 0.95676 0.97708 1.02236 0.86118 0.78667 0.83568 0.77513 1.21626 1.20679 1.21664 1.19032 0.90897 0.82575 1.43133 0.90530 1.44545 1.05195 0.99679 1.83515 1.21297 0.85412 0.88339 1.00304 1.22645 0.96006 0.99540 0.98684 1.22523 0.99804 0.93123 0.95097 1.23131 1.00582 0.96251 0.81194 1.50173 1.50396 1.27428 1.10006 1.19796 0.79304 0.82693 0.86072 1.90734 1.61428 1.72635 1.15085 1.22118 0.96777 0.93048 0.90888 1.88066 1.68136 1.39057 1.32151 1.22612 0.95804 0.87213 0.95393 1.22991 0.89709 0.94558 0.90834 0.90203 1.22926 1.00800 0.95165 0.99743 1.22940 1.00656 0.99048 0.96626 1.23419 0.94986 0.90954 0.94227 1.89259 1.31935 1.53474 1.53291 1.22947 0.95431 0.83282 0.97063 1.21116 0.92375 0.85476 0.97586 0.93774 0.91773 0.95229 0.91652 0.91800 0.89493 0.90024 0.90504 0.90366 0.92234 0.91615 0.90329 0.89986 0.90560 0.90370 0.89014 0.92148 0.89477 0.89822 0.95746 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 10.45 55.49 0.58 -26.10 16 2 C -0.01 -0.22 5.45 -17.43 -0.09 -0.31 16 3 Si 0.91 22.12 29.56 -169.99 -5.02 17.09 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.30 10.26 -15.06 -0.15 -6.46 16 8 H 0.08 2.07 7.84 -52.49 -0.41 1.65 16 9 N -0.60 -14.95 3.41 -170.35 -0.58 -15.53 16 10 C 0.17 3.94 5.47 -2.85 -0.02 3.92 16 11 C -0.13 -2.15 6.36 -25.55 -0.16 -2.32 16 12 C -0.10 -1.65 0.99 -154.72 -0.15 -1.81 16 13 C 0.11 1.33 7.99 -3.60 -0.03 1.30 16 14 N -0.64 -9.69 3.62 -186.85 -0.68 -10.36 16 15 C 0.53 8.83 8.13 -10.99 -0.09 8.74 16 16 O -0.52 -11.21 17.22 -14.35 -0.25 -11.46 16 17 C 0.05 0.63 6.16 36.00 0.22 0.85 16 18 O -0.36 -5.06 9.88 -56.80 -0.56 -5.62 16 19 C 0.07 0.64 5.54 37.16 0.21 0.85 16 20 C 0.08 0.74 3.57 -25.95 -0.09 0.64 16 21 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 22 C -0.15 -0.91 6.63 -25.16 -0.17 -1.08 16 23 C -0.15 -0.88 7.09 -25.16 -0.18 -1.06 16 24 C 0.04 0.32 7.63 37.93 0.29 0.61 16 25 O -0.36 -4.30 11.34 -35.27 -0.40 -4.70 16 26 C 0.13 2.21 8.16 -3.60 -0.03 2.18 16 27 C 0.16 3.18 6.65 -3.04 -0.02 3.16 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.06 1.67 6.88 -51.93 -0.36 1.31 16 30 H 0.03 0.75 7.97 -51.93 -0.41 0.33 16 31 H 0.06 0.97 7.99 -51.93 -0.41 0.55 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.41 7.87 -51.93 -0.41 0.00 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.09 1.67 8.13 -51.93 -0.42 1.25 16 46 H 0.08 1.24 8.04 -51.93 -0.42 0.83 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -35.61 387.94 -9.85 -45.46 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -8.32 Total: -3.86 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -0.47 Total: 9.23 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.68 Total: -51.99 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -1.21 Total: -21.78 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.61 -9.85 -45.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148923036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.369 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds