Wall clock time and date at job start Fri Apr 10 2020 18:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 119.99570 * 2 1 4 4 H 1.48501 * 109.47181 * 239.99343 * 3 2 1 5 5 H 1.48493 * 109.47734 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47195 * 119.99965 * 3 2 1 7 7 C 1.38811 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99762 * 160.74724 * 7 2 1 9 9 N 1.36940 * 120.00435 * 340.74361 * 7 2 1 10 10 C 1.43423 * 120.63396 * 155.63436 * 9 7 2 11 11 C 1.55326 * 116.24093 * 269.37423 * 10 9 7 12 12 C 1.55190 * 108.87582 * 319.46614 * 11 10 9 13 13 O 1.39805 * 110.45831 * 322.14186 * 12 11 10 14 14 C 1.42382 * 108.54100 * 101.31596 * 13 12 11 15 15 H 1.09000 * 108.61780 * 28.31840 * 14 13 12 16 16 C 1.52992 * 108.61920 * 146.22628 * 14 13 12 17 17 N 1.46499 * 109.47603 * 302.05973 * 16 14 13 18 18 C 1.34773 * 119.99933 * 179.97438 * 17 16 14 19 19 O 1.21281 * 120.00434 * 359.97438 * 18 17 16 20 20 C 1.50706 * 119.99909 * 180.02562 * 18 17 16 21 21 C 1.53003 * 109.47087 * 179.97438 * 20 18 17 22 22 N 1.46498 * 109.46593 * 179.97438 * 21 20 18 23 23 C 1.34602 * 126.43712 * 125.00259 * 22 21 20 24 24 N 1.31073 * 106.68063 * 179.75447 * 23 22 21 25 25 N 1.28833 * 107.98834 * 0.24163 * 24 23 22 26 26 N 1.28736 * 109.40211 * 0.02562 * 25 24 23 27 27 C 1.46920 * 113.68800 * 267.27691 * 14 13 12 28 28 H 0.96999 * 120.00273 * 0.02562 * 1 2 3 29 29 H 1.08996 * 108.12676 * 31.13966 * 10 9 7 30 30 H 1.09000 * 108.12318 * 147.62063 * 10 9 7 31 31 H 1.09005 * 109.57129 * 79.28471 * 11 10 9 32 32 H 1.08994 * 109.57094 * 199.64769 * 11 10 9 33 33 H 1.08999 * 109.25413 * 82.42174 * 12 11 10 34 34 H 1.08995 * 109.25725 * 201.86266 * 12 11 10 35 35 H 1.09001 * 109.47213 * 182.05434 * 16 14 13 36 36 H 1.09007 * 109.47034 * 62.06043 * 16 14 13 37 37 H 0.96997 * 119.99616 * 359.97438 * 17 16 14 38 38 H 1.08997 * 109.46860 * 59.99499 * 20 18 17 39 39 H 1.09004 * 109.46454 * 299.99993 * 20 18 17 40 40 H 1.08995 * 109.46854 * 60.00392 * 21 20 18 41 41 H 1.08997 * 109.46887 * 299.99914 * 21 20 18 42 42 H 1.08001 * 126.65837 * 0.02562 * 23 22 21 43 43 H 1.08994 * 109.99087 * 176.19551 * 27 14 13 44 44 H 1.09000 * 109.98594 * 297.46895 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0450 -1.2284 -0.3079 9 7 1.3831 -2.3548 0.3922 10 6 1.8493 -3.6319 -0.0646 11 6 1.2152 -4.1647 -1.3787 12 6 -0.3041 -3.8485 -1.3672 13 8 -0.8268 -4.0082 -0.0804 14 6 -0.9697 -2.7219 0.5131 15 1 -1.1311 -1.9897 -0.2780 16 6 -2.2008 -2.7371 1.4213 17 7 -3.3825 -3.1027 0.6363 18 6 -4.5892 -3.1806 1.2315 19 8 -4.6968 -2.9486 2.4170 20 6 -5.8047 -3.5573 0.4240 21 6 -7.0355 -3.5736 1.3327 22 7 -8.2171 -3.9391 0.5476 23 6 -9.0701 -4.9470 0.8088 24 7 -9.9829 -4.9207 -0.1315 25 7 -9.7022 -3.9506 -0.9315 26 7 -8.6337 -3.3577 -0.5263 27 6 0.1941 -2.3056 1.3073 28 1 -0.4850 0.8400 -0.0004 29 1 2.9275 -3.5670 -0.2102 30 1 1.6624 -4.3624 0.7225 31 1 1.6832 -3.6769 -2.2338 32 1 1.3633 -5.2425 -1.4447 33 1 -0.4598 -2.8205 -1.6945 34 1 -0.8171 -4.5245 -2.0511 35 1 -2.3446 -1.7475 1.8551 36 1 -2.0549 -3.4656 2.2190 37 1 -3.2963 -3.2886 -0.3118 38 1 -5.6604 -4.5468 -0.0096 39 1 -5.9509 -2.8288 -0.3735 40 1 -7.1799 -2.5842 1.7666 41 1 -6.8889 -4.3022 2.1300 42 1 -9.0157 -5.6400 1.6354 43 1 0.0495 -1.2903 1.6763 44 1 0.3378 -2.9890 2.1441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150487329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:55 Heat of formation + Delta-G solvation = 49.299609 kcal Electronic energy + Delta-G solvation = -27736.537751 eV Core-core repulsion = 23727.314789 eV Total energy + Delta-G solvation = -4009.222962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.16510 -41.11332 -40.28202 -37.11210 -36.77472 -35.93918 -33.88607 -33.53523 -33.09156 -32.33708 -30.27701 -27.74598 -27.06731 -26.21146 -24.79908 -24.28600 -23.25609 -22.38772 -21.36453 -21.18925 -19.03693 -18.93072 -18.10215 -17.72609 -17.61704 -16.99744 -16.83700 -16.68720 -16.52797 -16.15218 -15.62986 -15.50984 -15.17665 -14.76712 -14.47599 -14.24849 -14.12451 -13.92069 -13.56624 -13.54364 -13.27966 -13.18293 -12.93648 -12.62003 -12.50646 -12.49979 -12.31475 -12.19409 -11.93131 -11.85596 -11.78074 -11.37716 -11.35567 -11.19056 -11.03180 -10.55809 -10.27281 -10.06991 -8.71342 -7.90196 -5.30179 0.28888 1.01458 1.24098 1.48030 1.51956 1.56518 1.58378 2.23832 2.52208 3.12099 3.26453 3.27357 3.48689 3.52120 3.57151 3.78840 3.89413 4.16251 4.27017 4.29684 4.36487 4.37921 4.43781 4.49563 4.57113 4.66640 4.75175 4.79631 4.80240 4.82753 4.97925 5.08734 5.18688 5.19250 5.26049 5.34531 5.39784 5.44396 5.51618 5.68269 6.36292 6.50707 6.52840 7.11227 7.17990 7.57678 7.83547 8.35697 9.15446 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.002561 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.541550 B =10928.677976 C =11560.568168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.035 4.035 3 Si 0.957 3.043 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.264 4.264 8 H 0.061 0.939 9 N -0.602 5.602 10 C 0.154 3.846 11 C -0.166 4.166 12 C 0.068 3.932 13 O -0.365 6.365 14 C 0.077 3.923 15 H 0.083 0.917 16 C 0.134 3.866 17 N -0.707 5.707 18 C 0.521 3.479 19 O -0.580 6.580 20 C -0.145 4.145 21 C 0.132 3.868 22 N -0.303 5.303 23 C 0.183 3.817 24 N -0.345 5.345 25 N -0.113 5.113 26 N -0.112 5.112 27 C 0.143 3.857 28 H 0.251 0.749 29 H 0.029 0.971 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.411 0.589 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.154 0.846 42 H 0.287 0.713 43 H 0.078 0.922 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.195 -11.021 2.377 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.231 4.231 3 Si 0.787 3.213 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.212 1.212 7 C -0.394 4.394 8 H 0.079 0.921 9 N -0.323 5.323 10 C 0.026 3.974 11 C -0.207 4.207 12 C -0.009 4.009 13 O -0.284 6.284 14 C 0.018 3.982 15 H 0.101 0.899 16 C 0.009 3.991 17 N -0.357 5.357 18 C 0.307 3.693 19 O -0.461 6.461 20 C -0.186 4.186 21 C 0.012 3.988 22 N -0.105 5.105 23 C -0.115 4.115 24 N -0.193 5.193 25 N -0.107 5.107 26 N -0.099 5.099 27 C 0.019 3.981 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.246 0.754 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.172 0.828 42 H 0.303 0.697 43 H 0.096 0.904 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.978 -10.378 2.151 15.994 hybrid contribution 1.413 1.124 0.106 1.809 sum -10.564 -9.254 2.257 14.225 Atomic orbital electron populations 1.69972 1.05709 1.25742 1.54704 1.25435 0.96070 1.00378 1.01235 0.85508 0.77774 0.80247 0.77802 1.20863 1.22021 1.21233 1.19352 0.93635 0.86408 1.39985 0.92094 1.44225 1.34645 1.01836 1.51632 1.20480 0.95935 0.86769 0.94190 1.23499 0.96784 1.00605 0.99783 1.22413 0.93739 1.00113 0.84655 1.87542 1.83390 1.28146 1.29282 1.21762 0.93744 0.84700 0.97975 0.89897 1.21369 0.83731 0.99983 0.94055 1.45821 1.06969 1.69166 1.13787 1.20568 0.84642 0.76478 0.87583 1.90718 1.86383 1.51852 1.17124 1.21803 0.90551 1.06850 0.99390 1.22177 0.77839 1.06826 0.91948 1.48942 1.22329 1.21183 1.18020 1.28715 0.86773 0.93819 1.02150 1.74935 1.24383 1.15826 1.04203 1.78639 1.07156 1.03905 1.21032 1.78840 1.09672 1.20960 1.00462 1.20688 0.86241 1.00152 0.91057 0.93963 0.95307 0.94573 0.92973 0.90335 0.94570 0.89532 0.91856 0.91846 0.75361 0.85748 0.86836 0.86923 0.82811 0.69740 0.90383 0.95640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.75 9.57 21.65 0.21 -46.55 16 2 C -0.03 -1.76 4.92 84.86 0.42 -1.34 16 3 Si 0.96 42.20 29.60 68.60 2.03 44.23 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.26 -13.45 9.62 84.03 0.81 -12.64 16 8 H 0.06 3.13 7.88 -2.91 -0.02 3.11 16 9 N -0.60 -27.79 2.61 -706.02 -1.84 -29.64 16 10 C 0.15 6.11 5.32 87.75 0.47 6.57 16 11 C -0.17 -5.56 6.75 32.14 0.22 -5.35 16 12 C 0.07 2.26 6.38 72.73 0.46 2.72 16 13 O -0.37 -12.49 9.44 -138.87 -1.31 -13.81 16 14 C 0.08 2.87 1.98 28.71 0.06 2.93 16 15 H 0.08 3.58 5.24 -2.39 -0.01 3.56 16 16 C 0.13 4.32 5.25 86.38 0.45 4.77 16 17 N -0.71 -17.81 5.41 -463.06 -2.51 -20.31 16 18 C 0.52 11.51 7.83 87.66 0.69 12.20 16 19 O -0.58 -16.53 15.98 -3.03 -0.05 -16.58 16 20 C -0.15 -1.92 5.84 29.85 0.17 -1.74 16 21 C 0.13 1.38 5.77 86.38 0.50 1.88 16 22 N -0.30 -4.31 3.44 -351.82 -1.21 -5.52 16 23 C 0.18 2.12 12.79 180.27 2.31 4.42 16 24 N -0.35 -7.37 12.36 -60.29 -0.74 -8.12 16 25 N -0.11 -2.94 13.43 37.01 0.50 -2.44 16 26 N -0.11 -2.51 13.07 37.02 0.48 -2.02 16 27 C 0.14 6.19 4.71 83.79 0.39 6.58 16 28 H 0.25 12.73 8.31 -92.71 -0.77 11.96 16 29 H 0.03 1.14 7.96 -2.39 -0.02 1.12 16 30 H 0.04 1.38 7.98 -2.39 -0.02 1.36 16 31 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.04 1.41 6.66 -2.39 -0.02 1.39 16 34 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.41 9.12 8.26 -92.71 -0.77 8.36 16 38 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 1.57 8.13 -2.39 -0.02 1.55 16 40 H 0.11 1.35 8.10 -2.39 -0.02 1.33 16 41 H 0.15 0.74 8.04 -2.39 -0.02 0.73 16 42 H 0.29 -0.32 8.06 -2.91 -0.02 -0.34 16 43 H 0.08 3.78 6.03 -2.39 -0.01 3.77 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -67.75 361.03 2.76 -64.99 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.26 Total: 14.75 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 6.94 Total: 21.01 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -5.12 Total: -114.60 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -1.36 Total: -30.39 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -67.75 2.76 -64.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150487329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.288 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds