Wall clock time and date at job start Fri Apr 10 2020 18:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 N 1.28524 * 124.43978 * 90.02327 * 3 2 1 5 5 C 1.31132 * 109.05587 * 179.97438 * 4 3 2 6 6 C 1.50696 * 127.11401 * 180.02562 * 5 4 3 7 7 C 1.40926 * 105.77840 * 359.97438 * 5 4 3 8 8 C 1.47795 * 127.23950 * 180.02562 * 7 5 4 9 9 O 1.21557 * 119.99999 * 0.02562 * 8 7 5 10 10 N 1.34776 * 120.00324 * 180.02562 * 8 7 5 11 11 C 1.46503 * 120.00335 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47039 * 180.02562 * 11 10 8 13 13 N 1.46906 * 109.47035 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99955 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46957 * 179.97438 * 14 13 12 16 16 O 1.21292 * 120.00130 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99744 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99727 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99987 * 0.02562 * 18 17 15 20 20 C 1.38956 * 120.00253 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00041 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 119.99524 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47306 * 89.99937 * 22 20 18 24 24 H 1.48508 * 109.47324 * 209.99706 * 22 20 18 25 25 H 1.48504 * 109.47536 * 329.99740 * 22 20 18 26 26 N 1.28581 * 124.44290 * 269.72493 * 3 2 1 27 27 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 32 32 H 1.09009 * 109.47046 * 89.97245 * 6 5 4 33 33 H 1.08992 * 109.47517 * 209.97452 * 6 5 4 34 34 H 1.09000 * 109.47117 * 329.97768 * 6 5 4 35 35 H 0.97006 * 120.00122 * 0.02562 * 10 8 7 36 36 H 1.08990 * 109.47136 * 300.00385 * 11 10 8 37 37 H 1.09001 * 109.46739 * 60.00394 * 11 10 8 38 38 H 1.08999 * 109.47621 * 300.00096 * 12 11 10 39 39 H 1.09001 * 109.47096 * 60.00535 * 12 11 10 40 40 H 1.00897 * 110.99925 * 56.04627 * 13 12 11 41 41 H 1.09001 * 109.46737 * 299.99266 * 14 13 12 42 42 H 1.08998 * 109.47452 * 59.99859 * 14 13 12 43 43 H 0.96999 * 120.00290 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99589 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2611 2.0663 1.0600 5 6 2.6830 3.2582 0.7121 6 6 3.0827 4.3849 1.6295 7 6 2.6866 3.2672 -0.6971 8 6 3.0820 4.3819 -1.5834 9 8 3.4556 5.4352 -1.1054 10 7 3.0282 4.2306 -2.9216 11 6 3.4195 5.3358 -3.8001 12 6 3.2662 4.9054 -5.2602 13 7 3.6592 6.0134 -6.1411 14 6 3.5239 5.6358 -7.5543 15 6 3.9344 6.7950 -8.4255 16 8 4.3038 7.8333 -7.9190 17 7 3.8921 6.6775 -9.7674 18 6 4.2650 7.7322 -10.5599 19 1 4.5931 8.6570 -10.1089 20 6 4.2219 7.6109 -11.9435 21 7 4.5799 8.6217 -12.7031 22 14 3.6551 6.0111 -12.7236 23 1 2.1852 6.0546 -12.9301 24 1 4.3337 5.8307 -14.0322 25 1 3.9959 4.8760 -11.8287 26 7 2.2656 2.0651 -1.0604 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 4.1477 4.3132 1.8505 33 1 2.8756 5.3390 1.1449 34 1 2.5139 4.3175 2.5569 35 1 2.7296 3.3902 -3.3031 36 1 2.7807 6.1974 -3.6066 37 1 4.4584 5.6031 -3.6069 38 1 3.9048 4.0436 -5.4540 39 1 2.2271 4.6385 -5.4531 40 1 4.5979 6.3220 -5.9372 41 1 4.1638 4.7787 -7.7642 42 1 2.4865 5.3745 -7.7630 43 1 3.5971 5.8470 -10.1725 44 1 4.5494 8.5372 -13.6689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153752821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:11 Heat of formation + Delta-G solvation = 39.691228 kcal Electronic energy + Delta-G solvation = -25818.351609 eV Core-core repulsion = 21808.711996 eV Total energy + Delta-G solvation = -4009.639613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.07063 -39.75134 -38.50807 -36.44649 -35.57026 -34.53790 -33.86108 -33.27916 -31.86118 -31.66941 -29.67159 -28.34968 -26.52194 -25.24938 -23.74301 -22.99275 -22.15166 -21.47086 -20.77495 -19.41216 -18.46924 -18.12742 -17.49206 -16.98057 -16.26363 -16.16841 -15.85650 -15.25909 -15.13641 -14.89128 -14.48505 -14.30844 -14.04597 -13.78883 -13.69477 -13.53969 -13.17922 -13.08087 -12.99796 -12.74016 -12.56877 -12.28807 -12.09285 -11.91394 -11.85364 -11.58773 -11.52835 -11.40136 -11.15896 -10.69279 -10.60571 -10.40846 -9.98016 -9.65262 -9.58057 -9.29045 -8.63294 -8.24473 -8.17883 -6.31419 -3.82933 0.92391 1.54034 1.66062 2.72597 2.96067 3.01314 3.06134 3.14334 3.45594 3.72649 4.08471 4.11175 4.16392 4.21797 4.36187 4.43810 4.54370 4.79753 4.80598 4.89726 4.99493 5.02742 5.10142 5.21561 5.32773 5.35334 5.37396 5.38364 5.56373 5.59970 5.74065 5.77022 5.83109 5.90117 5.94007 6.11842 6.14031 6.96335 7.15057 7.47916 7.57397 7.72709 7.88435 8.14006 8.59032 8.94533 9.41720 9.81639 10.81678 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.023038 B = 0.001757 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.092233 B =15932.258130 C =17031.488971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.133 3.867 3 N -0.140 5.140 4 N -0.293 5.293 5 C 0.063 3.937 6 C -0.070 4.070 7 C -0.048 4.048 8 C 0.610 3.390 9 O -0.520 6.520 10 N -0.714 5.714 11 C 0.120 3.880 12 C 0.049 3.951 13 N -0.665 5.665 14 C 0.050 3.950 15 C 0.449 3.551 16 O -0.563 6.563 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 N -0.250 5.250 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.406 0.594 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.078 0.922 40 H 0.354 0.646 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 -22.441 25.909 35.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.043 5.043 4 N -0.134 5.134 5 C -0.101 4.101 6 C -0.129 4.129 7 C -0.211 4.211 8 C 0.393 3.607 9 O -0.394 6.394 10 N -0.366 5.366 11 C -0.003 4.003 12 C -0.081 4.081 13 N -0.298 5.298 14 C -0.083 4.083 15 C 0.235 3.765 16 O -0.445 6.445 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.138 0.862 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 N -0.098 5.098 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.240 0.760 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.174 0.826 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.203 0.797 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.015 -21.830 26.366 35.156 hybrid contribution 0.386 -1.663 -1.262 2.123 sum -7.628 -23.493 25.104 35.218 Atomic orbital electron populations 1.22199 0.92738 1.04184 1.03898 1.22124 0.96329 0.73934 1.06201 1.48125 1.43555 1.13457 0.99122 1.73970 1.18861 1.05278 1.15244 1.23314 1.00342 0.93777 0.92635 1.20259 1.02025 0.93722 0.96858 1.22910 1.10113 0.93629 0.94447 1.16540 0.77822 0.84968 0.81392 1.90821 1.46799 1.26612 1.75153 1.45724 1.67501 1.17974 1.05351 1.21354 1.01752 0.89268 0.87971 1.22078 1.01620 0.92896 0.91506 1.59910 1.33519 1.34294 1.02104 1.21704 1.01947 0.96298 0.88353 1.19673 0.84764 0.89535 0.82574 1.90578 1.50668 1.30046 1.73161 1.42194 1.60568 1.14797 1.05401 1.19442 1.41461 0.94649 0.87861 0.86236 1.25045 0.97643 0.97566 0.95940 1.69622 1.46891 1.30359 1.05185 0.86663 0.79626 0.83117 0.79902 1.19591 1.20198 1.19561 1.74303 1.14958 1.04420 1.16114 0.91226 0.91273 0.89285 0.87018 0.87004 0.89958 0.88455 0.90607 0.75958 0.89680 0.90850 0.94786 0.90338 0.82579 0.93580 0.89313 0.79694 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.53 10.24 37.16 0.38 -0.15 16 2 C 0.13 0.51 7.24 -4.04 -0.03 0.48 16 3 N -0.14 -1.18 3.94 -10.62 -0.04 -1.22 16 4 N -0.29 -2.91 12.01 33.92 0.41 -2.50 16 5 C 0.06 0.66 7.39 -81.88 -0.61 0.06 16 6 C -0.07 -0.58 10.00 36.00 0.36 -0.22 16 7 C -0.05 -0.53 7.21 -82.68 -0.60 -1.13 16 8 C 0.61 7.26 7.83 -12.35 -0.10 7.16 16 9 O -0.52 -7.47 15.20 5.32 0.08 -7.39 16 10 N -0.71 -7.12 5.55 -61.27 -0.34 -7.46 16 11 C 0.12 1.31 5.93 -4.04 -0.02 1.28 16 12 C 0.05 0.52 5.80 -3.82 -0.02 0.50 16 13 N -0.66 -9.89 6.13 -115.05 -0.70 -10.60 16 14 C 0.05 0.79 6.17 -4.97 -0.03 0.76 16 15 C 0.45 10.10 7.82 -10.98 -0.09 10.01 16 16 O -0.56 -15.10 15.78 5.55 0.09 -15.01 16 17 N -0.59 -13.95 5.09 -10.96 -0.06 -14.01 16 18 C -0.31 -8.63 10.16 -14.93 -0.15 -8.79 16 19 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.71 13.96 55.50 0.77 -24.93 16 22 Si 0.88 19.22 27.73 -169.99 -4.71 14.51 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 26 N -0.25 -2.44 11.84 33.42 0.40 -2.04 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.10 0.90 6.77 -51.93 -0.35 0.55 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.41 3.28 8.24 -40.82 -0.34 2.94 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.35 5.47 8.43 -39.29 -0.33 5.14 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -36.12 380.00 -5.69 -41.80 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -6.31 Total: 12.12 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -1.00 Total: 11.00 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.43 Total: -62.76 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.17 Total: -22.40 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.12 -5.69 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153752821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.495 kcal (2) G-P(sol) polarization free energy of solvation -36.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds