Wall clock time and date at job start Fri Apr 10 2020 18:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 N 1.28524 * 124.43978 * 90.02327 * 3 2 1 5 5 C 1.31132 * 109.05587 * 179.97438 * 4 3 2 6 6 C 1.50696 * 127.11401 * 180.02562 * 5 4 3 7 7 C 1.40926 * 105.77840 * 359.97438 * 5 4 3 8 8 C 1.47795 * 127.23950 * 180.02562 * 7 5 4 9 9 O 1.21557 * 119.99999 * 0.02562 * 8 7 5 10 10 N 1.34776 * 120.00324 * 180.02562 * 8 7 5 11 11 C 1.46503 * 120.00335 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47039 * 180.02562 * 11 10 8 13 13 N 1.46906 * 109.47035 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99955 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46957 * 179.97438 * 14 13 12 16 16 O 1.21292 * 120.00130 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99744 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99727 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99987 * 0.02562 * 18 17 15 20 20 C 1.38956 * 120.00253 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00041 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 119.99524 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47306 * 89.99937 * 22 20 18 24 24 H 1.48508 * 109.47324 * 209.99706 * 22 20 18 25 25 H 1.48504 * 109.47536 * 329.99740 * 22 20 18 26 26 N 1.28581 * 124.44290 * 269.72493 * 3 2 1 27 27 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 32 32 H 1.09009 * 109.47046 * 89.97245 * 6 5 4 33 33 H 1.08992 * 109.47517 * 209.97452 * 6 5 4 34 34 H 1.09000 * 109.47117 * 329.97768 * 6 5 4 35 35 H 0.97006 * 120.00122 * 0.02562 * 10 8 7 36 36 H 1.08990 * 109.47136 * 300.00385 * 11 10 8 37 37 H 1.09001 * 109.46739 * 60.00394 * 11 10 8 38 38 H 1.08999 * 109.47621 * 300.00096 * 12 11 10 39 39 H 1.09001 * 109.47096 * 60.00535 * 12 11 10 40 40 H 1.00897 * 110.99925 * 56.04627 * 13 12 11 41 41 H 1.09001 * 109.46737 * 299.99266 * 14 13 12 42 42 H 1.08998 * 109.47452 * 59.99859 * 14 13 12 43 43 H 0.96999 * 120.00290 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99589 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2611 2.0663 1.0600 5 6 2.6830 3.2582 0.7121 6 6 3.0827 4.3849 1.6295 7 6 2.6866 3.2672 -0.6971 8 6 3.0820 4.3819 -1.5834 9 8 3.4556 5.4352 -1.1054 10 7 3.0282 4.2306 -2.9216 11 6 3.4195 5.3358 -3.8001 12 6 3.2662 4.9054 -5.2602 13 7 3.6592 6.0134 -6.1411 14 6 3.5239 5.6358 -7.5543 15 6 3.9344 6.7950 -8.4255 16 8 4.3038 7.8333 -7.9190 17 7 3.8921 6.6775 -9.7674 18 6 4.2650 7.7322 -10.5599 19 1 4.5931 8.6570 -10.1089 20 6 4.2219 7.6109 -11.9435 21 7 4.5799 8.6217 -12.7031 22 14 3.6551 6.0111 -12.7236 23 1 2.1852 6.0546 -12.9301 24 1 4.3337 5.8307 -14.0322 25 1 3.9959 4.8760 -11.8287 26 7 2.2656 2.0651 -1.0604 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 4.1477 4.3132 1.8505 33 1 2.8756 5.3390 1.1449 34 1 2.5139 4.3175 2.5569 35 1 2.7296 3.3902 -3.3031 36 1 2.7807 6.1974 -3.6066 37 1 4.4584 5.6031 -3.6069 38 1 3.9048 4.0436 -5.4540 39 1 2.2271 4.6385 -5.4531 40 1 4.5979 6.3220 -5.9372 41 1 4.1638 4.7787 -7.7642 42 1 2.4865 5.3745 -7.7630 43 1 3.5971 5.8470 -10.1725 44 1 4.5494 8.5372 -13.6689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153752821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:10 Heat of formation + Delta-G solvation = 7.715064 kcal Electronic energy + Delta-G solvation = -25819.738200 eV Core-core repulsion = 21808.711996 eV Total energy + Delta-G solvation = -4011.026203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.77240 -40.67943 -40.27082 -37.53648 -36.12006 -36.01260 -35.36046 -34.03666 -33.73381 -32.41360 -30.73971 -29.03429 -27.87579 -26.25224 -25.12580 -23.64819 -23.03287 -22.14860 -21.62808 -21.28117 -20.28896 -18.99238 -18.19966 -17.73970 -17.57408 -17.26563 -17.07708 -16.71794 -16.22958 -15.77855 -15.47609 -15.30705 -15.11356 -14.91917 -14.79379 -14.60888 -14.30888 -14.16585 -13.95696 -13.79821 -13.44394 -13.38722 -13.04351 -12.96772 -12.64207 -12.56981 -12.41480 -12.39711 -12.36540 -12.09945 -11.96545 -11.50275 -11.42990 -11.33679 -10.44629 -10.40841 -10.24035 -10.11435 -9.37565 -8.40223 -6.01472 0.14877 0.78844 1.14458 1.31226 1.37487 1.46192 1.87190 1.96963 2.08577 2.24546 2.71267 2.86391 3.16075 3.45719 3.62456 3.77899 3.89979 3.90425 3.96795 4.11326 4.18643 4.22483 4.40411 4.46374 4.48268 4.56997 4.61044 4.69926 4.73593 4.78771 4.89892 4.94298 4.96117 5.14987 5.19753 5.31138 5.53298 5.54465 5.88129 6.01097 6.32244 6.33478 6.60553 6.89157 6.97198 7.06508 7.40685 7.97800 8.77493 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.023038 B = 0.001757 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.092233 B =15932.258130 C =17031.488971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.119 3.881 3 N -0.130 5.130 4 N -0.301 5.301 5 C 0.049 3.951 6 C -0.067 4.067 7 C -0.070 4.070 8 C 0.608 3.392 9 O -0.553 6.553 10 N -0.700 5.700 11 C 0.126 3.874 12 C 0.059 3.941 13 N -0.688 5.688 14 C 0.065 3.935 15 C 0.446 3.554 16 O -0.616 6.616 17 N -0.590 5.590 18 C -0.330 4.330 19 H 0.054 0.946 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.257 1.257 24 H -0.276 1.276 25 H -0.228 1.228 26 N -0.246 5.246 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.417 0.583 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.347 0.653 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.391 0.609 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 -27.346 26.072 38.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.002 3.998 3 N -0.035 5.035 4 N -0.142 5.142 5 C -0.114 4.114 6 C -0.126 4.126 7 C -0.231 4.231 8 C 0.392 3.608 9 O -0.429 6.429 10 N -0.352 5.352 11 C 0.002 3.998 12 C -0.070 4.070 13 N -0.321 5.321 14 C -0.067 4.067 15 C 0.234 3.766 16 O -0.500 6.500 17 N -0.232 5.232 18 C -0.460 4.460 19 H 0.072 0.928 20 C -0.216 4.216 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.181 1.181 24 H -0.201 1.201 25 H -0.152 1.152 26 N -0.096 5.096 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.135 0.865 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.254 0.746 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.166 0.834 41 H 0.101 0.899 42 H 0.137 0.863 43 H 0.226 0.774 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.497 -26.781 26.545 38.886 hybrid contribution 0.836 -0.113 -1.201 1.468 sum -8.661 -26.895 25.344 37.956 Atomic orbital electron populations 1.22177 0.92035 1.05608 1.02588 1.22668 0.96879 0.71988 1.08259 1.48720 1.41917 1.14371 0.98463 1.73965 1.19168 1.05258 1.15835 1.23628 1.00494 0.94450 0.92854 1.20266 1.02706 0.92553 0.97054 1.22781 1.11754 0.93998 0.94606 1.16706 0.77348 0.84820 0.81903 1.90800 1.48400 1.27937 1.75789 1.45559 1.66802 1.18155 1.04679 1.21188 1.00853 0.89055 0.88656 1.22055 1.02970 0.92116 0.89861 1.59875 1.33349 1.36682 1.02243 1.21629 1.04158 0.93601 0.87334 1.21046 0.82269 0.90676 0.82620 1.90559 1.52340 1.32949 1.74159 1.42008 1.61107 1.14385 1.05671 1.19012 1.43454 0.94365 0.89126 0.92829 1.26163 0.96856 1.02711 0.95827 1.69812 1.48168 1.33715 1.05872 0.85333 0.79407 0.77731 0.78826 1.18146 1.20145 1.15155 1.74256 1.14740 1.04027 1.16547 0.92442 0.92582 0.86481 0.85102 0.84891 0.89263 0.89756 0.89047 0.74573 0.91533 0.91686 0.92288 0.88657 0.83398 0.89918 0.86295 0.77352 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.24 71.98 0.74 0.10 16 2 C 0.12 0.60 7.24 86.38 0.63 1.22 16 3 N -0.13 -1.97 3.94 -187.50 -0.74 -2.71 16 4 N -0.30 -5.62 12.01 -46.59 -0.56 -6.18 16 5 C 0.05 1.00 7.39 43.32 0.32 1.32 16 6 C -0.07 -1.11 10.00 71.23 0.71 -0.40 16 7 C -0.07 -1.51 7.21 42.24 0.30 -1.21 16 8 C 0.61 14.36 7.83 86.77 0.68 15.03 16 9 O -0.55 -16.31 15.20 -3.89 -0.06 -16.37 16 10 N -0.70 -13.04 5.55 -466.04 -2.59 -15.63 16 11 C 0.13 2.63 5.93 86.38 0.51 3.14 16 12 C 0.06 1.08 5.80 86.30 0.50 1.58 16 13 N -0.69 -19.10 6.13 -517.92 -3.17 -22.27 16 14 C 0.06 1.85 6.17 85.56 0.53 2.37 16 15 C 0.45 19.81 7.82 87.66 0.69 20.50 16 16 O -0.62 -34.21 15.78 -3.07 -0.05 -34.26 16 17 N -0.59 -27.41 5.09 -306.98 -1.56 -28.98 16 18 C -0.33 -19.36 10.16 84.04 0.85 -18.51 16 19 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 20 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 21 N -0.94 -56.49 13.96 21.66 0.30 -56.19 16 22 Si 0.97 38.22 27.73 68.60 1.90 40.12 16 23 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.23 -7.44 6.52 99.48 0.65 -6.79 16 26 N -0.25 -4.42 11.84 -48.17 -0.57 -4.99 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.12 -0.20 8.14 -2.38 -0.02 -0.22 16 30 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.08 1.62 6.77 -2.39 -0.02 1.61 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.42 5.77 8.24 -92.70 -0.76 5.00 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.35 10.47 8.43 -89.70 -0.76 9.71 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.39 14.76 5.76 -92.71 -0.53 14.22 16 44 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -85.44 380.00 -1.22 -86.66 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -1.05 Total: 36.10 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 6.93 Total: 24.67 kcal Atomic # 7 Polarization: -128.04 SS G_CDS: -8.89 Total: -136.93 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.11 Total: -50.63 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 1.90 Total: 40.12 kcal Total: -85.44 -1.22 -86.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153752821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.378 kcal (2) G-P(sol) polarization free energy of solvation -85.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds