Wall clock time and date at job start Fri Apr 10 2020 18:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46744 * 2 1 4 4 C 1.36933 * 120.00579 * 273.80429 * 3 2 1 5 5 H 1.07999 * 120.00589 * 174.11833 * 4 3 2 6 6 C 1.38817 * 119.99740 * 354.11267 * 4 3 2 7 7 N 1.31620 * 119.99816 * 34.13666 * 6 4 3 8 8 Si 1.86799 * 120.00047 * 214.14182 * 6 4 3 9 9 H 1.48500 * 109.47296 * 84.99989 * 8 6 4 10 10 H 1.48507 * 109.46844 * 205.00144 * 8 6 4 11 11 H 1.48497 * 109.47007 * 324.99880 * 8 6 4 12 12 C 1.46506 * 119.99467 * 93.80451 * 3 2 1 13 13 H 1.09009 * 109.46699 * 179.97438 * 12 3 2 14 14 C 1.53003 * 109.47167 * 60.00291 * 12 3 2 15 15 C 1.52993 * 109.47322 * 299.99834 * 12 3 2 16 16 N 1.46506 * 109.46957 * 305.00023 * 15 12 3 17 17 C 1.34781 * 119.99597 * 179.97438 * 16 15 12 18 18 O 1.21663 * 120.00177 * 5.24983 * 17 16 15 19 19 C 1.46899 * 119.99503 * 185.24649 * 17 16 15 20 20 C 1.39424 * 120.81874 * 186.21026 * 19 17 16 21 21 N 1.32575 * 119.70125 * 179.97438 * 20 19 17 22 22 C 1.31845 * 121.60700 * 359.97438 * 21 20 19 23 23 O 1.34692 * 119.10638 * 180.02562 * 22 21 20 24 24 N 1.35647 * 121.78089 * 0.02977 * 22 21 20 25 25 C 1.46510 * 119.95675 * 179.97438 * 24 22 21 26 26 C 1.35026 * 120.09202 * 359.67685 * 24 22 21 27 27 O 1.21826 * 120.76924 * 180.28184 * 26 24 22 28 28 H 1.09000 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47289 * 299.99468 * 1 2 3 30 30 H 1.09001 * 109.47314 * 59.99772 * 1 2 3 31 31 H 1.08993 * 109.46950 * 240.00644 * 2 1 3 32 32 H 1.08992 * 109.47307 * 120.00457 * 2 1 3 33 33 H 0.96996 * 119.99926 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47367 * 59.99502 * 14 12 3 35 35 H 1.09000 * 109.47205 * 179.97438 * 14 12 3 36 36 H 1.08998 * 109.46285 * 299.99536 * 14 12 3 37 37 H 1.08997 * 109.47619 * 64.99936 * 15 12 3 38 38 H 1.08997 * 109.46974 * 185.00584 * 15 12 3 39 39 H 0.96997 * 120.00528 * 0.02562 * 16 15 12 40 40 H 1.07997 * 120.15569 * 359.96205 * 20 19 17 41 41 H 0.96698 * 117.00577 * 0.02562 * 23 22 21 42 42 H 1.09000 * 109.46865 * 359.97438 * 25 24 22 43 43 H 1.09003 * 109.46722 * 119.99766 * 25 24 22 44 44 H 1.08994 * 109.46959 * 239.99790 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1723 2.0531 -1.1832 5 1 2.4405 3.0993 -1.1793 6 6 1.9838 1.3895 -2.3878 7 7 1.0784 0.4387 -2.4807 8 14 3.0153 1.8457 -3.8769 9 1 4.3018 1.1052 -3.8336 10 1 2.2799 1.4885 -5.1166 11 1 3.2841 3.3061 -3.8641 12 6 2.3417 2.0437 1.2661 13 1 2.6869 3.0585 1.0673 14 6 3.4440 1.2621 1.9836 15 6 1.0936 2.0929 2.1494 16 7 0.0011 2.7367 1.4157 17 6 -1.2039 2.8908 1.9995 18 8 -1.3583 2.5831 3.1664 19 6 -2.3307 3.4305 1.2269 20 6 -3.5475 3.7176 1.8440 21 7 -4.5497 4.2045 1.1254 22 6 -4.4278 4.4277 -0.1682 23 8 -5.4785 4.9240 -0.8493 24 7 -3.2729 4.1710 -0.8318 25 6 -3.1817 4.4337 -2.2703 26 6 -2.2052 3.6794 -0.1673 27 8 -1.1604 3.4492 -0.7500 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.9465 -0.0248 -3.3224 34 1 4.3332 1.2270 1.3543 35 1 3.6850 1.7552 2.9254 36 1 3.0992 0.2473 2.1823 37 1 0.8006 1.0789 2.4213 38 1 1.3100 2.6631 3.0528 39 1 0.1447 3.0514 0.5095 40 1 -3.6733 3.5441 2.9024 41 1 -6.2863 5.0959 -0.3463 42 1 -4.1323 4.8290 -2.6283 43 1 -2.3917 5.1610 -2.4574 44 1 -2.9536 3.5061 -2.7952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154569158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:30 Heat of formation + Delta-G solvation = -18.671956 kcal Electronic energy + Delta-G solvation = -29588.921133 eV Core-core repulsion = 25544.457951 eV Total energy + Delta-G solvation = -4044.463181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.98205 -39.38284 -38.45879 -37.12551 -36.65834 -35.21531 -33.58634 -31.92761 -30.61595 -30.01216 -28.26156 -28.08198 -26.09643 -24.47056 -23.68193 -23.45617 -21.64098 -20.51351 -19.52927 -18.95786 -18.77141 -17.38112 -16.97758 -16.77220 -16.07880 -15.69316 -15.30902 -15.13783 -14.62281 -14.52766 -14.24922 -13.87040 -13.72135 -13.36331 -13.13435 -12.80531 -12.69168 -12.49241 -12.32943 -12.19264 -11.92439 -11.72994 -11.34490 -11.00333 -10.66962 -10.63848 -10.59287 -10.47173 -10.34057 -10.19478 -10.01064 -9.66957 -9.49483 -9.38464 -9.11903 -8.46427 -8.10234 -8.01164 -6.85757 -5.70399 -2.85212 0.35252 1.61895 1.80786 3.05524 3.12303 3.47957 3.55889 3.58255 3.92557 3.97534 4.02913 4.43508 4.61549 4.93800 5.19406 5.31190 5.35306 5.37013 5.53376 5.56092 5.67496 5.75620 5.86864 6.07499 6.21364 6.26741 6.29563 6.43990 6.46653 6.73114 6.75467 6.84721 6.99752 7.12575 7.22366 7.32773 7.37916 7.49534 7.80114 7.85098 7.94108 8.31409 8.43896 8.48710 9.04096 9.36004 10.00735 10.46338 11.34773 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.005297 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.272252 B = 5285.224785 C = 6904.761594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.167 3.833 3 N -0.590 5.590 4 C -0.248 4.248 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.875 5.875 8 Si 0.871 3.129 9 H -0.292 1.292 10 H -0.298 1.298 11 H -0.284 1.284 12 C 0.161 3.839 13 H 0.066 0.934 14 C -0.157 4.157 15 C 0.103 3.897 16 N -0.688 5.688 17 C 0.577 3.423 18 O -0.573 6.573 19 C -0.338 4.338 20 C 0.252 3.748 21 N -0.598 5.598 22 C 0.601 3.399 23 O -0.458 6.458 24 N -0.508 5.508 25 C 0.058 3.942 26 C 0.536 3.464 27 O -0.465 6.465 28 H 0.009 0.991 29 H 0.020 0.980 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.006 0.994 33 H 0.248 0.752 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.425 0.575 40 H 0.185 0.815 41 H 0.441 0.559 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.684 8.780 4.129 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 N -0.312 5.312 4 C -0.376 4.376 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.520 5.520 8 Si 0.700 3.300 9 H -0.220 1.220 10 H -0.225 1.225 11 H -0.210 1.210 12 C 0.052 3.948 13 H 0.084 0.916 14 C -0.216 4.216 15 C -0.023 4.023 16 N -0.346 5.346 17 C 0.363 3.637 18 O -0.457 6.457 19 C -0.349 4.349 20 C 0.107 3.893 21 N -0.340 5.340 22 C 0.302 3.698 23 O -0.255 6.255 24 N -0.237 5.237 25 C -0.084 4.084 26 C 0.334 3.666 27 O -0.336 6.336 28 H 0.028 0.972 29 H 0.039 0.961 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.024 0.976 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.271 0.729 40 H 0.202 0.798 41 H 0.303 0.697 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.444 8.457 4.162 15.611 hybrid contribution 0.521 0.199 -1.382 1.491 sum -11.924 8.656 2.779 14.994 Atomic orbital electron populations 1.22418 0.99224 0.97499 1.01793 1.20837 0.92490 0.84643 0.97757 1.44247 1.75409 1.11061 1.00477 1.19099 1.40950 0.94313 0.83203 0.90883 1.24591 0.98737 0.98506 0.96711 1.70344 1.29079 1.27909 1.24645 0.86736 0.82161 0.77766 0.83293 1.21964 1.22477 1.21002 1.20540 0.91245 0.96315 0.86692 0.91581 1.22178 0.99697 1.00584 0.99173 1.22005 0.88595 0.97093 0.94620 1.46326 1.09596 1.58012 1.20624 1.17115 0.82420 0.78348 0.85807 1.90719 1.84414 1.54183 1.16340 1.21729 0.99631 1.20166 0.93351 1.22939 0.84901 0.81675 0.99794 1.68448 1.33404 1.30432 1.01735 1.20334 0.81408 0.82851 0.85163 1.84143 1.23231 1.77194 1.40950 1.46531 1.10209 1.54079 1.12838 1.22243 1.04610 1.04660 0.76881 1.17283 0.82860 0.78875 0.87557 1.91002 1.24556 1.49640 1.68381 0.97215 0.96146 0.89058 0.90213 0.97606 0.94183 0.92322 0.93690 0.93007 0.92241 0.92979 0.72884 0.79848 0.69716 0.88473 0.89327 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.28 37.16 0.34 -3.37 16 2 C 0.17 4.12 5.01 -4.04 -0.02 4.10 16 3 N -0.59 -14.30 1.92 -165.66 -0.32 -14.62 16 4 C -0.25 -6.61 9.36 -15.06 -0.14 -6.76 16 5 H 0.07 1.97 7.85 -52.49 -0.41 1.55 16 6 C 0.01 0.34 4.90 -17.43 -0.09 0.25 16 7 N -0.88 -24.49 8.58 55.49 0.48 -24.01 16 8 Si 0.87 21.56 29.67 -169.99 -5.04 16.51 16 9 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 10 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 C 0.16 3.31 2.87 -67.93 -0.19 3.12 16 13 H 0.07 1.36 7.78 -51.92 -0.40 0.95 16 14 C -0.16 -2.78 9.18 37.16 0.34 -2.43 16 15 C 0.10 2.08 4.33 -4.04 -0.02 2.07 16 16 N -0.69 -14.58 3.85 -61.55 -0.24 -14.82 16 17 C 0.58 11.69 7.48 -12.75 -0.10 11.59 16 18 O -0.57 -12.35 16.42 5.22 0.09 -12.26 16 19 C -0.34 -5.79 5.93 -104.44 -0.62 -6.40 16 20 C 0.25 3.39 10.83 -16.79 -0.18 3.21 16 21 N -0.60 -6.65 10.31 -13.98 -0.14 -6.80 16 22 C 0.60 6.18 8.60 -88.69 -0.76 5.41 16 23 O -0.46 -2.63 11.91 -15.83 -0.19 -2.82 16 24 N -0.51 -6.60 2.99 -128.28 -0.38 -6.99 16 25 C 0.06 0.61 10.10 59.85 0.60 1.22 16 26 C 0.54 9.31 7.47 -14.63 -0.11 9.20 16 27 O -0.46 -9.94 13.93 5.08 0.07 -9.87 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.02 0.48 4.81 -51.93 -0.25 0.23 16 30 H 0.09 2.55 6.30 -51.93 -0.33 2.22 16 31 H 0.08 2.18 5.88 -51.93 -0.31 1.88 16 32 H 0.01 0.13 6.43 -51.93 -0.33 -0.20 16 33 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.92 6.66 -51.93 -0.35 0.58 16 37 H 0.06 1.27 6.91 -51.93 -0.36 0.91 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.42 9.74 4.69 -40.82 -0.19 9.55 16 40 H 0.18 2.21 7.70 -52.49 -0.40 1.81 16 41 H 0.44 0.36 9.08 45.56 0.41 0.77 16 42 H 0.10 0.72 6.77 -51.93 -0.35 0.36 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -33.95 354.25 -6.22 -40.17 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.94 Total: 8.94 kcal Atomic # 6 Polarization: 22.15 SS G_CDS: -0.94 Total: 21.22 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -0.61 Total: -67.23 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.03 Total: -24.95 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.04 Total: 16.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.95 -6.22 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154569158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.498 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds