Wall clock time and date at job start Fri Apr 10 2020 18:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46744 * 2 1 4 4 C 1.36933 * 120.00579 * 273.80429 * 3 2 1 5 5 H 1.07999 * 120.00589 * 174.11833 * 4 3 2 6 6 C 1.38817 * 119.99740 * 354.11267 * 4 3 2 7 7 N 1.31620 * 119.99816 * 34.13666 * 6 4 3 8 8 Si 1.86799 * 120.00047 * 214.14182 * 6 4 3 9 9 H 1.48500 * 109.47296 * 84.99989 * 8 6 4 10 10 H 1.48507 * 109.46844 * 205.00144 * 8 6 4 11 11 H 1.48497 * 109.47007 * 324.99880 * 8 6 4 12 12 C 1.46506 * 119.99467 * 93.80451 * 3 2 1 13 13 H 1.09009 * 109.46699 * 179.97438 * 12 3 2 14 14 C 1.53003 * 109.47167 * 60.00291 * 12 3 2 15 15 C 1.52993 * 109.47322 * 299.99834 * 12 3 2 16 16 N 1.46506 * 109.46957 * 305.00023 * 15 12 3 17 17 C 1.34781 * 119.99597 * 179.97438 * 16 15 12 18 18 O 1.21663 * 120.00177 * 5.24983 * 17 16 15 19 19 C 1.46899 * 119.99503 * 185.24649 * 17 16 15 20 20 C 1.39424 * 120.81874 * 186.21026 * 19 17 16 21 21 N 1.32575 * 119.70125 * 179.97438 * 20 19 17 22 22 C 1.31845 * 121.60700 * 359.97438 * 21 20 19 23 23 O 1.34692 * 119.10638 * 180.02562 * 22 21 20 24 24 N 1.35647 * 121.78089 * 0.02977 * 22 21 20 25 25 C 1.46510 * 119.95675 * 179.97438 * 24 22 21 26 26 C 1.35026 * 120.09202 * 359.67685 * 24 22 21 27 27 O 1.21826 * 120.76924 * 180.28184 * 26 24 22 28 28 H 1.09000 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47289 * 299.99468 * 1 2 3 30 30 H 1.09001 * 109.47314 * 59.99772 * 1 2 3 31 31 H 1.08993 * 109.46950 * 240.00644 * 2 1 3 32 32 H 1.08992 * 109.47307 * 120.00457 * 2 1 3 33 33 H 0.96996 * 119.99926 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47367 * 59.99502 * 14 12 3 35 35 H 1.09000 * 109.47205 * 179.97438 * 14 12 3 36 36 H 1.08998 * 109.46285 * 299.99536 * 14 12 3 37 37 H 1.08997 * 109.47619 * 64.99936 * 15 12 3 38 38 H 1.08997 * 109.46974 * 185.00584 * 15 12 3 39 39 H 0.96997 * 120.00528 * 0.02562 * 16 15 12 40 40 H 1.07997 * 120.15569 * 359.96205 * 20 19 17 41 41 H 0.96698 * 117.00577 * 0.02562 * 23 22 21 42 42 H 1.09000 * 109.46865 * 359.97438 * 25 24 22 43 43 H 1.09003 * 109.46722 * 119.99766 * 25 24 22 44 44 H 1.08994 * 109.46959 * 239.99790 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1723 2.0531 -1.1832 5 1 2.4405 3.0993 -1.1793 6 6 1.9838 1.3895 -2.3878 7 7 1.0784 0.4387 -2.4807 8 14 3.0153 1.8457 -3.8769 9 1 4.3018 1.1052 -3.8336 10 1 2.2799 1.4885 -5.1166 11 1 3.2841 3.3061 -3.8641 12 6 2.3417 2.0437 1.2661 13 1 2.6869 3.0585 1.0673 14 6 3.4440 1.2621 1.9836 15 6 1.0936 2.0929 2.1494 16 7 0.0011 2.7367 1.4157 17 6 -1.2039 2.8908 1.9995 18 8 -1.3583 2.5831 3.1664 19 6 -2.3307 3.4305 1.2269 20 6 -3.5475 3.7176 1.8440 21 7 -4.5497 4.2045 1.1254 22 6 -4.4278 4.4277 -0.1682 23 8 -5.4785 4.9240 -0.8493 24 7 -3.2729 4.1710 -0.8318 25 6 -3.1817 4.4337 -2.2703 26 6 -2.2052 3.6794 -0.1673 27 8 -1.1604 3.4492 -0.7500 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.9465 -0.0248 -3.3224 34 1 4.3332 1.2270 1.3543 35 1 3.6850 1.7552 2.9254 36 1 3.0992 0.2473 2.1823 37 1 0.8006 1.0789 2.4213 38 1 1.3100 2.6631 3.0528 39 1 0.1447 3.0514 0.5095 40 1 -3.6733 3.5441 2.9024 41 1 -6.2863 5.0959 -0.3463 42 1 -4.1323 4.8290 -2.6283 43 1 -2.3917 5.1610 -2.4574 44 1 -2.9536 3.5061 -2.7952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154569158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:29 Heat of formation + Delta-G solvation = -45.260091 kcal Electronic energy + Delta-G solvation = -29590.074081 eV Core-core repulsion = 25544.457951 eV Total energy + Delta-G solvation = -4045.616129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.06648 -40.65781 -39.68436 -38.64847 -37.89065 -36.31512 -35.34767 -33.65077 -32.07150 -31.71145 -30.17426 -29.04261 -27.46610 -25.72209 -25.48771 -24.69370 -23.50361 -21.88747 -20.79264 -20.36042 -19.87454 -18.78272 -18.65644 -17.99379 -17.22622 -17.11548 -16.88636 -16.64374 -16.09339 -15.66471 -15.61451 -15.32680 -15.31693 -14.66319 -14.41190 -14.31197 -14.28315 -14.06849 -13.66303 -13.55350 -13.45750 -13.17665 -13.02080 -12.76483 -12.57000 -12.44000 -12.35607 -12.11997 -11.82141 -11.60300 -11.39504 -11.37515 -11.28141 -11.10083 -10.87328 -10.12948 -9.87466 -9.45969 -8.83616 -7.77143 -4.91442 -0.69877 0.67149 0.69106 1.48272 1.53926 1.57816 1.74031 2.22744 2.54257 2.61855 2.66959 3.08455 3.30218 3.32314 3.68406 3.94769 4.10064 4.18674 4.25662 4.29641 4.43225 4.58297 4.63303 4.69105 4.73138 4.80769 4.85222 4.92304 5.00271 5.13255 5.23022 5.25537 5.29509 5.36777 5.47503 5.74733 5.77860 5.88407 6.01123 6.22479 6.39626 6.55916 6.59070 6.92866 7.30023 7.45901 8.02509 8.44545 9.26684 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.005297 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.272252 B = 5285.224785 C = 6904.761594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.175 3.825 3 N -0.597 5.597 4 C -0.245 4.245 5 H 0.067 0.933 6 C -0.033 4.033 7 N -0.896 5.896 8 Si 0.927 3.073 9 H -0.295 1.295 10 H -0.304 1.304 11 H -0.281 1.281 12 C 0.157 3.843 13 H 0.064 0.936 14 C -0.146 4.146 15 C 0.109 3.891 16 N -0.700 5.700 17 C 0.573 3.427 18 O -0.596 6.596 19 C -0.386 4.386 20 C 0.288 3.712 21 N -0.587 5.587 22 C 0.622 3.378 23 O -0.432 6.432 24 N -0.512 5.512 25 C 0.057 3.943 26 C 0.535 3.465 27 O -0.519 6.519 28 H 0.014 0.986 29 H 0.021 0.979 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.025 0.975 33 H 0.241 0.759 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.417 0.583 40 H 0.201 0.799 41 H 0.466 0.534 42 H 0.137 0.863 43 H 0.084 0.916 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.394 10.120 4.738 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.050 3.950 3 N -0.319 5.319 4 C -0.374 4.374 5 H 0.084 0.916 6 C -0.229 4.229 7 N -0.542 5.542 8 Si 0.758 3.242 9 H -0.223 1.223 10 H -0.231 1.231 11 H -0.206 1.206 12 C 0.050 3.950 13 H 0.082 0.918 14 C -0.205 4.205 15 C -0.017 4.017 16 N -0.357 5.357 17 C 0.362 3.638 18 O -0.481 6.481 19 C -0.397 4.397 20 C 0.140 3.860 21 N -0.328 5.328 22 C 0.324 3.676 23 O -0.233 6.233 24 N -0.238 5.238 25 C -0.083 4.083 26 C 0.335 3.665 27 O -0.395 6.395 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.262 0.738 40 H 0.217 0.783 41 H 0.334 0.666 42 H 0.155 0.845 43 H 0.103 0.897 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.238 9.855 4.760 17.958 hybrid contribution 0.793 -0.078 -1.564 1.755 sum -13.445 9.776 3.196 16.928 Atomic orbital electron populations 1.22186 0.99441 0.97231 1.00138 1.20649 0.92138 0.84999 0.97189 1.44349 1.75485 1.10855 1.01206 1.19208 1.39779 0.94130 0.84288 0.91552 1.25092 0.99623 0.99396 0.98746 1.70480 1.29997 1.29125 1.24561 0.85842 0.80319 0.77426 0.80609 1.22289 1.23138 1.20607 1.20757 0.92288 0.96404 0.85594 0.91810 1.22045 0.98054 1.00240 1.00160 1.21925 0.88212 0.96575 0.94976 1.46457 1.10375 1.58488 1.20367 1.17536 0.82784 0.77730 0.85791 1.90677 1.84825 1.55433 1.17165 1.21466 1.00223 1.24532 0.93486 1.23189 0.83675 0.78637 1.00485 1.68627 1.31990 1.30260 1.01925 1.20454 0.81561 0.80835 0.84719 1.84179 1.23098 1.75407 1.40571 1.46360 1.10286 1.53512 1.13683 1.22391 1.06681 1.03823 0.75425 1.17297 0.83014 0.78449 0.87748 1.90956 1.26812 1.52279 1.69451 0.96661 0.96047 0.92256 0.92970 0.95722 0.94950 0.92781 0.90431 0.93204 0.93613 0.91391 0.73826 0.78278 0.66618 0.84502 0.89703 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 9.28 71.98 0.67 -5.97 16 2 C 0.18 8.79 5.01 86.38 0.43 9.22 16 3 N -0.60 -29.39 1.92 -678.03 -1.30 -30.69 16 4 C -0.25 -13.37 9.36 84.04 0.79 -12.59 16 5 H 0.07 3.66 7.85 -2.91 -0.02 3.63 16 6 C -0.03 -1.83 4.90 84.86 0.42 -1.41 16 7 N -0.90 -51.76 8.58 21.65 0.19 -51.57 16 8 Si 0.93 45.49 29.67 68.60 2.04 47.53 16 9 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 10 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 12 C 0.16 6.45 2.87 44.99 0.13 6.58 16 13 H 0.06 2.63 7.78 -2.38 -0.02 2.61 16 14 C -0.15 -4.95 9.18 71.98 0.66 -4.29 16 15 C 0.11 4.42 4.33 86.38 0.37 4.80 16 16 N -0.70 -30.47 3.85 -466.87 -1.80 -32.26 16 17 C 0.57 23.64 7.48 86.51 0.65 24.29 16 18 O -0.60 -25.77 16.42 -4.23 -0.07 -25.84 16 19 C -0.39 -13.25 5.93 -19.75 -0.12 -13.37 16 20 C 0.29 7.26 10.83 84.87 0.92 8.18 16 21 N -0.59 -11.20 10.31 -311.74 -3.21 -14.42 16 22 C 0.62 10.81 8.60 179.67 1.55 12.36 16 23 O -0.43 -2.91 11.91 -79.57 -0.95 -3.86 16 24 N -0.51 -12.69 2.99 -789.41 -2.36 -15.05 16 25 C 0.06 1.16 10.10 127.77 1.29 2.45 16 26 C 0.54 18.91 7.47 85.18 0.64 19.54 16 27 O -0.52 -23.32 13.93 -4.75 -0.07 -23.39 16 28 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.02 1.04 4.81 -2.39 -0.01 1.03 16 30 H 0.06 3.43 6.30 -2.39 -0.02 3.42 16 31 H 0.05 2.93 5.88 -2.39 -0.01 2.91 16 32 H 0.02 1.13 6.43 -2.39 -0.02 1.11 16 33 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 1.70 6.66 -2.39 -0.02 1.69 16 37 H 0.05 1.96 6.91 -2.39 -0.02 1.94 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.42 19.90 4.69 -92.71 -0.44 19.46 16 40 H 0.20 4.37 7.70 -2.91 -0.02 4.34 16 41 H 0.47 -1.81 9.08 -74.06 -0.67 -2.48 16 42 H 0.14 1.58 6.77 -2.39 -0.02 1.56 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -76.58 354.25 0.81 -75.77 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -0.04 Total: 23.99 kcal Atomic # 6 Polarization: 41.40 SS G_CDS: 8.39 Total: 49.79 kcal Atomic # 7 Polarization: -135.51 SS G_CDS: -8.49 Total: -143.99 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: -1.08 Total: -53.09 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.04 Total: 47.53 kcal Total: -76.58 0.81 -75.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154569158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.511 kcal (2) G-P(sol) polarization free energy of solvation -76.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds