Wall clock time and date at job start Fri Apr 10 2020 18:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 119.99971 * 2 1 4 4 H 1.48500 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47071 * 300.00627 * 3 2 1 6 6 H 1.48498 * 109.46901 * 60.00251 * 3 2 1 7 7 C 1.38952 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00014 * 180.02562 * 7 2 1 9 9 N 1.37088 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99892 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99940 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00111 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47245 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99865 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47152 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.47571 * 179.97438 * 15 14 13 17 17 N 1.46496 * 109.47059 * 180.02562 * 16 15 14 18 18 C 1.34774 * 119.99544 * 180.02562 * 17 16 15 19 19 O 1.21279 * 120.00472 * 0.02562 * 18 17 16 20 20 C 1.50706 * 120.00020 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47238 * 180.02562 * 20 18 17 22 22 N 1.46496 * 109.47294 * 179.97438 * 21 20 18 23 23 C 1.34421 * 126.82626 * 124.99421 * 22 21 20 24 24 N 1.30833 * 108.08023 * 179.97438 * 23 22 21 25 25 C 1.33239 * 109.82898 * 0.02562 * 24 23 22 26 26 N 1.30716 * 108.94514 * 359.75095 * 25 24 23 27 27 H 0.96993 * 120.00071 * 359.97438 * 1 2 3 28 28 H 0.97002 * 120.00737 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47065 * 59.99655 * 12 10 9 30 30 H 1.09006 * 109.47169 * 300.00300 * 12 10 9 31 31 H 1.00900 * 110.99399 * 303.95192 * 13 12 10 32 32 H 1.09004 * 109.47151 * 59.99984 * 14 13 12 33 33 H 1.09001 * 109.47520 * 300.00166 * 14 13 12 34 34 H 1.09004 * 109.46785 * 60.00152 * 15 14 13 35 35 H 1.09001 * 109.47364 * 300.00653 * 15 14 13 36 36 H 1.08996 * 109.46524 * 60.00315 * 16 15 14 37 37 H 1.08992 * 109.46876 * 300.00648 * 16 15 14 38 38 H 0.96994 * 120.00700 * 0.02562 * 17 16 15 39 39 H 1.09001 * 109.46953 * 299.99667 * 20 18 17 40 40 H 1.09000 * 109.47318 * 59.99264 * 20 18 17 41 41 H 1.09001 * 109.46832 * 299.99686 * 21 20 18 42 42 H 1.09004 * 109.47261 * 59.99705 * 21 20 18 43 43 H 1.08002 * 125.96463 * 0.02562 * 23 22 21 44 44 H 1.07997 * 125.52819 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8892 2.3966 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2033 -0.0001 9 7 1.3235 -2.3905 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9795 -0.0004 14 6 1.4984 -7.2708 -0.0003 15 6 2.5232 -8.4067 -0.0002 16 6 1.7940 -9.7518 0.0005 17 7 2.7754 -10.8394 0.0013 18 6 2.3602 -12.1216 0.0015 19 8 1.1742 -12.3751 0.0006 20 6 3.3698 -13.2405 0.0028 21 6 2.6404 -14.5855 0.0021 22 7 3.6218 -15.6732 0.0028 23 6 3.7026 -16.6848 0.8843 24 7 4.7115 -17.4435 0.5402 25 6 5.2966 -16.9502 -0.5505 26 7 4.6620 -15.8689 -0.9203 27 1 -0.4850 0.8400 0.0004 28 1 0.3535 -2.3907 -0.0005 29 1 0.6176 -4.9204 -0.8913 30 1 0.6169 -4.9209 0.8886 31 1 2.8340 -5.9123 -0.7813 32 1 0.8738 -7.3455 -0.8906 33 1 0.8730 -7.3450 0.8894 34 1 3.1481 -8.3322 0.8899 35 1 3.1483 -8.3323 -0.8901 36 1 1.1689 -9.8265 -0.8893 37 1 1.1693 -9.8259 0.8906 38 1 3.7239 -10.6368 0.0016 39 1 3.9954 -13.1665 -0.8867 40 1 3.9940 -13.1657 0.8932 41 1 2.0145 -14.6598 0.8914 42 1 2.0165 -14.6601 -0.8886 43 1 3.0484 -16.8442 1.7286 44 1 6.1533 -17.3771 -1.0507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154696918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:35 Heat of formation + Delta-G solvation = 11.504177 kcal Electronic energy + Delta-G solvation = -24868.348283 eV Core-core repulsion = 20857.486388 eV Total energy + Delta-G solvation = -4010.861895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.52703 -40.23495 -38.35928 -36.75105 -35.41662 -34.96088 -33.88077 -31.94798 -31.68176 -31.24408 -30.69856 -27.35212 -25.72365 -24.54819 -23.18532 -22.47634 -21.98835 -21.82986 -20.63947 -19.25542 -18.24800 -17.90290 -17.07106 -16.71601 -16.51453 -16.27804 -15.82843 -15.68291 -15.32704 -14.99046 -14.60373 -14.52683 -14.41679 -14.04333 -13.92981 -13.54628 -13.43902 -13.14904 -12.95922 -12.58912 -12.12671 -11.91968 -11.90491 -11.84343 -11.50582 -11.48215 -11.14063 -11.00804 -10.59429 -10.43048 -10.36238 -10.27152 -10.24799 -10.15520 -9.54566 -9.52323 -8.51095 -8.12021 -7.98720 -6.44183 -3.85087 1.12934 1.72205 2.11396 2.49934 2.71439 3.14561 3.25349 3.32511 3.83824 3.86794 3.87844 4.03616 4.06885 4.23748 4.25775 4.48372 4.58589 4.70656 4.72610 4.88783 4.96531 5.04679 5.12313 5.14621 5.23020 5.34481 5.41071 5.53963 5.73043 5.74504 5.86420 5.92924 5.93626 5.94979 6.02318 6.23455 6.26541 6.97814 7.14007 7.53098 7.59044 7.59098 7.68997 8.03908 8.58555 9.15448 9.51649 10.02852 10.73609 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.050419 B = 0.001258 C = 0.001236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.213472 B =22243.955008 C =22651.796852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.063 3.937 15 C -0.130 4.130 16 C 0.120 3.880 17 N -0.725 5.725 18 C 0.519 3.481 19 O -0.542 6.542 20 C -0.154 4.154 21 C 0.146 3.854 22 N -0.381 5.381 23 C 0.257 3.743 24 N -0.549 5.549 25 C 0.199 3.801 26 N -0.320 5.320 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.349 0.651 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.404 0.596 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.220 0.780 44 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 -30.315 0.408 30.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.168 4.168 16 C -0.004 4.004 17 N -0.377 5.377 18 C 0.304 3.696 19 O -0.420 6.420 20 C -0.194 4.194 21 C 0.024 3.976 22 N -0.172 5.172 23 C -0.040 4.040 24 N -0.276 5.276 25 C -0.104 4.104 26 N -0.148 5.148 27 H 0.081 0.919 28 H 0.226 0.774 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.168 0.832 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.239 0.761 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.130 0.870 42 H 0.118 0.882 43 H 0.236 0.764 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.424 -30.095 0.628 30.296 hybrid contribution -0.318 1.078 -0.748 1.350 sum 3.106 -29.017 -0.120 29.183 Atomic orbital electron populations 1.69616 1.05957 1.28093 1.50604 1.25265 0.95627 0.99735 0.97276 0.85801 0.79721 0.81108 0.77721 1.19199 1.20761 1.20718 1.19761 0.93417 0.82227 1.47547 0.87851 1.41869 1.09217 1.04613 1.64276 1.19807 0.88385 0.84737 0.84540 1.90518 1.13769 1.87075 1.55480 1.21674 0.94328 0.90911 1.01295 1.60048 1.18905 0.99895 1.51365 1.21823 0.95297 0.88811 1.00841 1.21752 0.99017 0.92295 1.03743 1.21374 0.91270 0.85030 1.02742 1.45997 1.10939 1.05665 1.75078 1.20276 0.89467 0.83780 0.76087 1.90749 1.17566 1.83990 1.49672 1.21874 0.98878 0.92377 1.06320 1.21542 0.87610 0.82357 1.06129 1.50622 1.24297 1.21666 1.20584 1.26150 0.96576 0.85483 0.95780 1.70572 1.10025 1.30884 1.16128 1.26054 1.00078 0.91313 0.92951 1.78047 1.01739 1.20866 1.14141 0.91897 0.77443 0.93792 0.89538 0.83168 0.95227 0.90749 0.90072 0.91187 0.91242 0.91013 0.76148 0.87217 0.88078 0.86987 0.88220 0.76373 0.76636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.32 9.68 -14.94 -0.14 -8.47 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 9 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 10 C 0.44 10.27 7.82 -10.98 -0.09 10.18 16 11 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.67 -10.21 6.13 -115.05 -0.70 -10.92 16 14 C 0.06 0.68 5.69 -3.83 -0.02 0.66 16 15 C -0.13 -1.09 5.59 -26.73 -0.15 -1.24 16 16 C 0.12 0.93 5.67 -4.04 -0.02 0.91 16 17 N -0.73 -4.67 5.56 -60.30 -0.33 -5.00 16 18 C 0.52 3.81 7.83 -10.98 -0.09 3.72 16 19 O -0.54 -5.92 15.98 5.56 0.09 -5.84 16 20 C -0.15 -0.72 5.92 -27.88 -0.16 -0.89 16 21 C 0.15 0.71 5.84 -4.05 -0.02 0.69 16 22 N -0.38 -2.44 3.69 -62.63 -0.23 -2.67 16 23 C 0.26 1.47 12.63 -90.66 -1.14 0.32 16 24 N -0.55 -4.45 11.19 -15.83 -0.18 -4.63 16 25 C 0.20 1.47 13.03 -91.81 -1.20 0.28 16 26 N -0.32 -2.66 12.57 29.29 0.37 -2.30 16 27 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.35 5.46 8.43 -39.29 -0.33 5.13 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.40 1.72 8.47 -40.82 -0.35 1.37 16 39 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.11 0.36 8.04 -51.93 -0.42 -0.05 16 42 H 0.10 0.57 8.10 -51.93 -0.42 0.15 16 43 H 0.22 0.30 8.06 -52.49 -0.42 -0.13 16 44 H 0.22 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -36.36 385.41 -9.04 -45.40 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.42 Total: 10.26 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -3.17 Total: 7.51 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.41 Total: -63.38 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.18 Total: -21.46 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.36 -9.04 -45.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154696918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.904 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds