Wall clock time and date at job start Fri Apr 10 2020 18:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 119.99971 * 2 1 4 4 H 1.48500 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47071 * 300.00627 * 3 2 1 6 6 H 1.48498 * 109.46901 * 60.00251 * 3 2 1 7 7 C 1.38952 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00014 * 180.02562 * 7 2 1 9 9 N 1.37088 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99892 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99940 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00111 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47245 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99865 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47152 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.47571 * 179.97438 * 15 14 13 17 17 N 1.46496 * 109.47059 * 180.02562 * 16 15 14 18 18 C 1.34774 * 119.99544 * 180.02562 * 17 16 15 19 19 O 1.21279 * 120.00472 * 0.02562 * 18 17 16 20 20 C 1.50706 * 120.00020 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47238 * 180.02562 * 20 18 17 22 22 N 1.46496 * 109.47294 * 179.97438 * 21 20 18 23 23 C 1.34421 * 126.82626 * 124.99421 * 22 21 20 24 24 N 1.30833 * 108.08023 * 179.97438 * 23 22 21 25 25 C 1.33239 * 109.82898 * 0.02562 * 24 23 22 26 26 N 1.30716 * 108.94514 * 359.75095 * 25 24 23 27 27 H 0.96993 * 120.00071 * 359.97438 * 1 2 3 28 28 H 0.97002 * 120.00737 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47065 * 59.99655 * 12 10 9 30 30 H 1.09006 * 109.47169 * 300.00300 * 12 10 9 31 31 H 1.00900 * 110.99399 * 303.95192 * 13 12 10 32 32 H 1.09004 * 109.47151 * 59.99984 * 14 13 12 33 33 H 1.09001 * 109.47520 * 300.00166 * 14 13 12 34 34 H 1.09004 * 109.46785 * 60.00152 * 15 14 13 35 35 H 1.09001 * 109.47364 * 300.00653 * 15 14 13 36 36 H 1.08996 * 109.46524 * 60.00315 * 16 15 14 37 37 H 1.08992 * 109.46876 * 300.00648 * 16 15 14 38 38 H 0.96994 * 120.00700 * 0.02562 * 17 16 15 39 39 H 1.09001 * 109.46953 * 299.99667 * 20 18 17 40 40 H 1.09000 * 109.47318 * 59.99264 * 20 18 17 41 41 H 1.09001 * 109.46832 * 299.99686 * 21 20 18 42 42 H 1.09004 * 109.47261 * 59.99705 * 21 20 18 43 43 H 1.08002 * 125.96463 * 0.02562 * 23 22 21 44 44 H 1.07997 * 125.52819 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8892 2.3966 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2033 -0.0001 9 7 1.3235 -2.3905 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9795 -0.0004 14 6 1.4984 -7.2708 -0.0003 15 6 2.5232 -8.4067 -0.0002 16 6 1.7940 -9.7518 0.0005 17 7 2.7754 -10.8394 0.0013 18 6 2.3602 -12.1216 0.0015 19 8 1.1742 -12.3751 0.0006 20 6 3.3698 -13.2405 0.0028 21 6 2.6404 -14.5855 0.0021 22 7 3.6218 -15.6732 0.0028 23 6 3.7026 -16.6848 0.8843 24 7 4.7115 -17.4435 0.5402 25 6 5.2966 -16.9502 -0.5505 26 7 4.6620 -15.8689 -0.9203 27 1 -0.4850 0.8400 0.0004 28 1 0.3535 -2.3907 -0.0005 29 1 0.6176 -4.9204 -0.8913 30 1 0.6169 -4.9209 0.8886 31 1 2.8340 -5.9123 -0.7813 32 1 0.8738 -7.3455 -0.8906 33 1 0.8730 -7.3450 0.8894 34 1 3.1481 -8.3322 0.8899 35 1 3.1483 -8.3323 -0.8901 36 1 1.1689 -9.8265 -0.8893 37 1 1.1693 -9.8259 0.8906 38 1 3.7239 -10.6368 0.0016 39 1 3.9954 -13.1665 -0.8867 40 1 3.9940 -13.1657 0.8932 41 1 2.0145 -14.6598 0.8914 42 1 2.0165 -14.6601 -0.8886 43 1 3.0484 -16.8442 1.7286 44 1 6.1533 -17.3771 -1.0507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154696918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:34 Heat of formation + Delta-G solvation = -15.994872 kcal Electronic energy + Delta-G solvation = -24869.540731 eV Core-core repulsion = 20857.486388 eV Total energy + Delta-G solvation = -4012.054343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.99155 -40.84680 -40.15881 -37.70280 -36.19904 -35.83521 -35.59992 -33.30414 -32.66695 -32.17714 -31.33658 -28.62215 -26.79462 -25.75563 -24.24822 -22.91735 -22.60122 -22.48360 -21.28125 -21.00338 -19.90755 -18.71662 -17.86916 -17.56514 -17.31643 -17.06505 -16.95152 -16.55216 -16.37136 -15.94518 -15.86222 -15.70498 -15.20201 -15.06057 -14.99308 -14.62207 -14.44464 -14.15919 -13.60458 -13.54909 -13.36633 -13.21667 -13.03324 -12.85398 -12.68110 -12.42812 -12.40265 -12.27912 -12.11193 -11.85168 -11.51747 -11.18025 -10.97190 -10.79712 -10.64971 -10.35871 -10.13605 -10.02079 -9.33863 -8.47346 -5.96158 0.68186 1.30605 1.36594 1.42204 1.54089 1.56281 2.01450 2.04468 2.16538 2.29790 2.94735 3.20188 3.46468 3.52367 3.54773 3.62943 3.83753 4.00444 4.10407 4.14929 4.19887 4.21586 4.33298 4.36523 4.48604 4.57113 4.58914 4.66764 4.70507 4.77594 4.79484 5.15795 5.20676 5.28097 5.40427 5.40819 5.47196 5.88120 5.88331 6.09539 6.40072 6.46924 6.59453 7.12122 7.12234 7.15223 7.55650 8.10714 8.70272 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.050419 B = 0.001258 C = 0.001236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.213472 B =22243.955008 C =22651.796852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.064 3.936 13 N -0.684 5.684 14 C 0.062 3.938 15 C -0.117 4.117 16 C 0.127 3.873 17 N -0.719 5.719 18 C 0.520 3.480 19 O -0.580 6.580 20 C -0.140 4.140 21 C 0.146 3.854 22 N -0.383 5.383 23 C 0.262 3.738 24 N -0.581 5.581 25 C 0.193 3.807 26 N -0.351 5.351 27 H 0.278 0.722 28 H 0.397 0.603 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.345 0.655 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.416 0.584 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.088 0.912 43 H 0.258 0.742 44 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 -30.915 0.847 31.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.317 5.317 14 C -0.067 4.067 15 C -0.155 4.155 16 C 0.002 3.998 17 N -0.370 5.370 18 C 0.307 3.693 19 O -0.460 6.460 20 C -0.181 4.181 21 C 0.024 3.976 22 N -0.174 5.174 23 C -0.034 4.034 24 N -0.309 5.309 25 C -0.110 4.110 26 N -0.179 5.179 27 H 0.087 0.913 28 H 0.230 0.770 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.164 0.836 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.253 0.747 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.149 0.851 42 H 0.106 0.894 43 H 0.274 0.726 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.179 -30.701 1.066 30.883 hybrid contribution -0.255 1.205 -0.874 1.510 sum 2.924 -29.496 0.192 29.641 Atomic orbital electron populations 1.69672 1.06850 1.29260 1.50345 1.26031 0.96516 1.02392 0.96212 0.84876 0.78071 0.77101 0.78321 1.19744 1.19601 1.19628 1.19717 0.92734 0.84066 1.49929 0.90297 1.41941 1.09350 1.04735 1.64988 1.20915 0.88281 0.86226 0.82204 1.90485 1.15861 1.87987 1.56701 1.21535 0.94041 0.88077 1.03146 1.60054 1.19144 1.00985 1.51472 1.21918 0.95860 0.87309 1.01619 1.21598 0.98345 0.91613 1.03937 1.21201 0.91309 0.85045 1.02213 1.45937 1.11465 1.05246 1.74396 1.20646 0.89295 0.84312 0.75080 1.90736 1.19247 1.84520 1.51505 1.21767 0.98069 0.91214 1.07044 1.21613 0.87335 0.82076 1.06558 1.50675 1.24124 1.22135 1.20456 1.26921 0.96090 0.84409 0.95992 1.70589 1.11319 1.32091 1.16901 1.26554 1.00490 0.91060 0.92872 1.77985 1.02819 1.21690 1.15431 0.91288 0.76955 0.91528 0.87790 0.83647 0.94096 0.90206 0.90277 0.90602 0.91861 0.91534 0.74735 0.87223 0.86455 0.85088 0.89362 0.72632 0.74598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 3 Si 0.99 42.56 29.55 68.60 2.03 44.59 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.13 5.29 -306.98 -1.62 -30.75 16 10 C 0.44 20.45 7.82 87.66 0.69 21.14 16 11 O -0.62 -34.15 15.78 -3.05 -0.05 -34.20 16 12 C 0.06 2.12 6.17 85.56 0.53 2.65 16 13 N -0.68 -19.94 6.13 -517.92 -3.17 -23.11 16 14 C 0.06 1.23 5.69 86.30 0.49 1.72 16 15 C -0.12 -1.75 5.59 30.59 0.17 -1.58 16 16 C 0.13 1.78 5.67 86.38 0.49 2.27 16 17 N -0.72 -8.10 5.56 -463.07 -2.57 -10.67 16 18 C 0.52 6.96 7.83 87.66 0.69 7.65 16 19 O -0.58 -12.19 15.98 -3.02 -0.05 -12.24 16 20 C -0.14 -1.11 5.92 29.85 0.18 -0.93 16 21 C 0.15 1.24 5.84 86.38 0.50 1.74 16 22 N -0.38 -4.44 3.69 -352.07 -1.30 -5.74 16 23 C 0.26 2.55 12.63 180.36 2.28 4.83 16 24 N -0.58 -8.85 11.19 -204.01 -2.28 -11.14 16 25 C 0.19 2.74 13.03 180.76 2.36 5.09 16 26 N -0.35 -5.62 12.57 -61.25 -0.77 -6.39 16 27 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 28 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 31 H 0.34 10.49 8.43 -89.69 -0.76 9.74 16 32 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.42 2.73 8.47 -92.71 -0.79 1.94 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.13 0.60 8.04 -2.39 -0.02 0.58 16 42 H 0.09 0.97 8.10 -2.38 -0.02 0.95 16 43 H 0.26 0.00 8.06 -2.91 -0.02 -0.03 16 44 H 0.24 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -79.11 385.41 -1.08 -80.20 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: -1.22 Total: 32.16 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 9.65 Total: 26.31 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -11.44 Total: -136.82 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -0.10 Total: -46.44 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -79.11 -1.08 -80.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154696918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.204 kcal (2) G-P(sol) polarization free energy of solvation -79.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds