Wall clock time and date at job start Fri Apr 10 2020 18:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36591 * 126.57529 * 2 1 4 4 C 1.47526 * 125.77237 * 359.96771 * 3 2 1 5 5 O 1.21593 * 120.00379 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00190 * 179.72629 * 4 3 2 7 7 C 1.46496 * 120.00344 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47047 * 179.97438 * 7 6 4 9 9 C 1.53006 * 109.46731 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.46930 * 179.97438 * 9 8 7 11 11 C 1.46891 * 110.99999 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.47374 * 180.02562 * 11 10 9 13 13 O 1.21291 * 119.99445 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00367 * 180.02562 * 12 11 10 15 15 C 1.37099 * 120.00200 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99948 * 359.97438 * 15 14 12 17 17 C 1.38943 * 119.99906 * 179.97438 * 15 14 12 18 18 N 1.31410 * 120.00470 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47223 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46974 * 120.00180 * 19 17 15 22 22 H 1.48501 * 109.47321 * 240.00570 * 19 17 15 23 23 N 1.34399 * 108.45681 * 180.23136 * 3 2 1 24 24 N 1.28759 * 109.52247 * 359.61092 * 23 3 2 25 25 N 1.34810 * 126.58307 * 180.02562 * 2 1 3 26 26 C 1.46505 * 126.59193 * 0.02562 * 25 2 1 27 27 H 1.08996 * 109.47424 * 90.00333 * 1 2 3 28 28 H 1.09005 * 109.46658 * 210.00001 * 1 2 3 29 29 H 1.08994 * 109.47248 * 329.99322 * 1 2 3 30 30 H 0.97004 * 119.99647 * 359.97438 * 6 4 3 31 31 H 1.08999 * 109.46681 * 299.99185 * 7 6 4 32 32 H 1.08993 * 109.47302 * 59.99555 * 7 6 4 33 33 H 1.09004 * 109.47178 * 299.99331 * 8 7 6 34 34 H 1.08993 * 109.47411 * 59.99649 * 8 7 6 35 35 H 1.08999 * 109.46984 * 299.99205 * 9 8 7 36 36 H 1.09001 * 109.47159 * 60.00044 * 9 8 7 37 37 H 1.00899 * 111.00365 * 56.03693 * 10 9 8 38 38 H 1.09002 * 109.46993 * 299.99586 * 11 10 9 39 39 H 1.08995 * 109.47662 * 59.99926 * 11 10 9 40 40 H 0.96999 * 119.99943 * 359.97438 * 14 12 11 41 41 H 0.97006 * 120.00199 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.46613 * 90.00411 * 26 25 2 43 43 H 1.09005 * 109.46960 * 210.00176 * 26 25 2 44 44 H 1.08997 * 109.47123 * 330.00587 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8736 2.5027 -0.0007 5 8 0.6858 2.7628 -0.0018 6 7 2.7815 3.4989 0.0050 7 6 2.3373 4.8948 0.0049 8 6 3.5572 5.8182 0.0125 9 6 3.0932 7.2762 0.0118 10 7 4.2645 8.1628 0.0197 11 6 3.8566 9.5739 0.0199 12 6 5.0820 10.4512 0.0275 13 8 6.1865 9.9499 0.0328 14 7 4.9506 11.7925 0.0294 15 6 6.0654 12.5904 0.0369 16 1 7.0489 12.1442 0.0416 17 6 5.9299 13.9733 0.0384 18 7 4.7333 14.5163 0.0331 19 14 7.4489 15.0606 0.0492 20 1 8.6663 14.2102 0.0545 21 1 7.4511 15.9199 -1.1619 22 1 7.4368 15.9158 1.2632 23 7 3.5983 0.6790 -0.0051 24 7 3.6299 -0.6082 -0.0001 25 7 2.3105 -1.0825 -0.0005 26 6 1.8865 -2.4848 -0.0016 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 3.7290 3.2914 0.0099 31 1 1.7418 5.0865 -0.8877 32 1 1.7333 5.0840 0.8922 33 1 4.1524 5.6265 0.9053 34 1 4.1616 5.6292 -0.8746 35 1 2.4983 7.4677 -0.8813 36 1 2.4886 7.4656 0.8988 37 1 4.8750 7.9625 -0.7583 38 1 3.2670 9.7818 -0.8731 39 1 3.2571 9.7789 0.9068 40 1 4.0673 12.1933 0.0256 41 1 4.6387 15.4817 0.0345 42 1 1.7818 -2.8318 -1.0296 43 1 2.6330 -3.0906 0.5121 44 1 0.9292 -2.5754 0.5117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156106641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:42 Heat of formation + Delta-G solvation = 16.564211 kcal Electronic energy + Delta-G solvation = -25409.741260 eV Core-core repulsion = 21399.098785 eV Total energy + Delta-G solvation = -4010.642475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.69287 -39.63842 -38.28483 -36.53891 -35.47765 -34.78876 -33.81171 -32.79380 -31.50422 -31.09667 -28.76072 -27.98570 -27.00663 -24.99889 -23.82797 -22.88727 -21.69914 -21.44501 -20.63963 -19.20836 -18.32423 -17.83795 -16.93174 -16.55168 -16.31777 -16.08490 -15.79864 -15.30651 -14.69530 -14.60811 -14.58201 -14.35524 -14.19458 -13.84116 -13.80206 -13.56219 -13.45614 -13.34395 -13.04512 -12.82073 -12.36693 -12.03716 -11.82217 -11.76658 -11.60144 -11.44239 -11.38413 -11.06904 -10.90105 -10.69666 -10.35300 -10.32017 -10.19868 -9.63669 -9.49520 -9.24530 -8.43722 -8.03300 -7.93154 -6.39306 -3.80043 0.67048 1.32744 1.54491 2.85161 2.97901 3.18507 3.28929 3.36466 3.74024 3.85251 3.93893 4.07834 4.12291 4.29036 4.34602 4.36271 4.61551 4.78261 4.87265 4.94210 4.99774 5.10464 5.17449 5.20972 5.27314 5.29315 5.44827 5.48738 5.56371 5.66898 5.82786 5.90487 6.00817 6.03441 6.08473 6.20870 6.30242 7.16405 7.23824 7.54816 7.57896 7.68970 7.89885 8.09336 8.64066 9.20611 9.57207 10.08713 10.78538 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.044893 B = 0.001438 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.561371 B =19460.384855 C =20040.242452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.124 3.876 3 C -0.108 4.108 4 C 0.606 3.394 5 O -0.539 6.539 6 N -0.713 5.713 7 C 0.122 3.878 8 C -0.131 4.131 9 C 0.063 3.937 10 N -0.670 5.670 11 C 0.051 3.949 12 C 0.441 3.559 13 O -0.583 6.583 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 N -0.201 5.201 24 N -0.067 5.067 25 N -0.365 5.365 26 C 0.086 3.914 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.410 0.590 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.349 0.651 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.187 -32.444 -0.926 35.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.014 4.014 3 C -0.247 4.247 4 C 0.390 3.610 5 O -0.415 6.415 6 N -0.364 5.364 7 C -0.002 4.002 8 C -0.169 4.169 9 C -0.067 4.067 10 N -0.302 5.302 11 C -0.082 4.082 12 C 0.226 3.774 13 O -0.467 6.467 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.208 1.208 23 N -0.075 5.075 24 N -0.046 5.046 25 N -0.151 5.151 26 C -0.055 4.055 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.131 0.869 30 H 0.245 0.755 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.169 0.831 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.772 -32.828 -0.245 34.875 hybrid contribution -0.662 0.902 -0.914 1.445 sum -12.434 -31.925 -1.159 34.281 Atomic orbital electron populations 1.20740 0.84513 1.05475 1.04759 1.21949 0.96309 0.86333 0.96804 1.21201 0.89080 0.95430 1.19037 1.16674 0.85524 0.82481 0.76297 1.90771 1.15884 1.83644 1.51221 1.45786 1.10409 1.06010 1.74152 1.21383 0.97163 0.78871 1.02760 1.21757 0.97153 0.94051 1.03937 1.21822 0.92799 0.91292 1.00771 1.60034 1.16358 1.02221 1.51628 1.21667 0.96796 0.88467 1.01253 1.19829 0.90055 0.83092 0.84406 1.90523 1.26990 1.73870 1.55348 1.41869 1.09666 1.04154 1.64420 1.19764 0.88199 0.87469 1.47412 0.87859 1.25257 0.98046 0.97289 0.97362 1.69622 1.21823 1.12138 1.50768 0.85802 0.81292 0.79582 0.77675 1.19208 1.20799 1.20752 1.74605 1.18998 1.04245 1.09610 1.82025 0.95928 1.03365 1.23304 1.50301 1.06473 1.07860 1.50463 1.22195 1.02521 0.75929 1.04834 0.88885 0.90618 0.86869 0.75455 0.91136 0.90900 0.89963 0.91111 0.95225 0.90756 0.83139 0.93832 0.89539 0.77450 0.91949 0.89127 0.87943 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 9.57 36.01 0.34 -0.11 16 2 C 0.12 0.97 7.02 -81.88 -0.57 0.40 16 3 C -0.11 -1.13 6.99 -83.55 -0.58 -1.71 16 4 C 0.61 6.77 7.82 -12.47 -0.10 6.67 16 5 O -0.54 -6.86 14.72 5.28 0.08 -6.78 16 6 N -0.71 -7.07 5.55 -61.36 -0.34 -7.41 16 7 C 0.12 1.16 5.67 -4.04 -0.02 1.14 16 8 C -0.13 -1.31 5.59 -26.73 -0.15 -1.45 16 9 C 0.06 0.75 5.69 -3.82 -0.02 0.73 16 10 N -0.67 -10.82 6.12 -115.06 -0.70 -11.53 16 11 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 12 C 0.44 10.56 7.82 -10.98 -0.09 10.47 16 13 O -0.58 -16.07 15.78 5.55 0.09 -15.99 16 14 N -0.56 -14.49 5.29 -10.96 -0.06 -14.54 16 15 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 16 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 19 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 N -0.20 -2.29 12.04 32.85 0.40 -1.89 16 24 N -0.07 -0.70 13.78 60.35 0.83 0.14 16 25 N -0.37 -2.57 4.03 -63.59 -0.26 -2.82 16 26 C 0.09 0.15 11.33 59.85 0.68 0.82 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.14 7.18 -51.93 -0.37 -0.24 16 29 H 0.11 0.74 6.43 -51.93 -0.33 0.40 16 30 H 0.41 3.72 8.16 -40.82 -0.33 3.39 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.35 5.79 8.43 -39.29 -0.33 5.46 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 43 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.10 -0.07 7.16 -51.93 -0.37 -0.44 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -35.90 380.37 -5.55 -41.44 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.23 Total: 11.71 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -0.78 Total: 9.75 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.59 Total: -62.08 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.17 Total: -22.77 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.90 -5.55 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156106641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.008 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds