Wall clock time and date at job start Fri Apr 10 2020 18:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36591 * 126.57529 * 2 1 4 4 C 1.47526 * 125.77237 * 359.96771 * 3 2 1 5 5 O 1.21593 * 120.00379 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00190 * 179.72629 * 4 3 2 7 7 C 1.46496 * 120.00344 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47047 * 179.97438 * 7 6 4 9 9 C 1.53006 * 109.46731 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.46930 * 179.97438 * 9 8 7 11 11 C 1.46891 * 110.99999 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.47374 * 180.02562 * 11 10 9 13 13 O 1.21291 * 119.99445 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00367 * 180.02562 * 12 11 10 15 15 C 1.37099 * 120.00200 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99948 * 359.97438 * 15 14 12 17 17 C 1.38943 * 119.99906 * 179.97438 * 15 14 12 18 18 N 1.31410 * 120.00470 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47223 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46974 * 120.00180 * 19 17 15 22 22 H 1.48501 * 109.47321 * 240.00570 * 19 17 15 23 23 N 1.34399 * 108.45681 * 180.23136 * 3 2 1 24 24 N 1.28759 * 109.52247 * 359.61092 * 23 3 2 25 25 N 1.34810 * 126.58307 * 180.02562 * 2 1 3 26 26 C 1.46505 * 126.59193 * 0.02562 * 25 2 1 27 27 H 1.08996 * 109.47424 * 90.00333 * 1 2 3 28 28 H 1.09005 * 109.46658 * 210.00001 * 1 2 3 29 29 H 1.08994 * 109.47248 * 329.99322 * 1 2 3 30 30 H 0.97004 * 119.99647 * 359.97438 * 6 4 3 31 31 H 1.08999 * 109.46681 * 299.99185 * 7 6 4 32 32 H 1.08993 * 109.47302 * 59.99555 * 7 6 4 33 33 H 1.09004 * 109.47178 * 299.99331 * 8 7 6 34 34 H 1.08993 * 109.47411 * 59.99649 * 8 7 6 35 35 H 1.08999 * 109.46984 * 299.99205 * 9 8 7 36 36 H 1.09001 * 109.47159 * 60.00044 * 9 8 7 37 37 H 1.00899 * 111.00365 * 56.03693 * 10 9 8 38 38 H 1.09002 * 109.46993 * 299.99586 * 11 10 9 39 39 H 1.08995 * 109.47662 * 59.99926 * 11 10 9 40 40 H 0.96999 * 119.99943 * 359.97438 * 14 12 11 41 41 H 0.97006 * 120.00199 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.46613 * 90.00411 * 26 25 2 43 43 H 1.09005 * 109.46960 * 210.00176 * 26 25 2 44 44 H 1.08997 * 109.47123 * 330.00587 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8736 2.5027 -0.0007 5 8 0.6858 2.7628 -0.0018 6 7 2.7815 3.4989 0.0050 7 6 2.3373 4.8948 0.0049 8 6 3.5572 5.8182 0.0125 9 6 3.0932 7.2762 0.0118 10 7 4.2645 8.1628 0.0197 11 6 3.8566 9.5739 0.0199 12 6 5.0820 10.4512 0.0275 13 8 6.1865 9.9499 0.0328 14 7 4.9506 11.7925 0.0294 15 6 6.0654 12.5904 0.0369 16 1 7.0489 12.1442 0.0416 17 6 5.9299 13.9733 0.0384 18 7 4.7333 14.5163 0.0331 19 14 7.4489 15.0606 0.0492 20 1 8.6663 14.2102 0.0545 21 1 7.4511 15.9199 -1.1619 22 1 7.4368 15.9158 1.2632 23 7 3.5983 0.6790 -0.0051 24 7 3.6299 -0.6082 -0.0001 25 7 2.3105 -1.0825 -0.0005 26 6 1.8865 -2.4848 -0.0016 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 3.7290 3.2914 0.0099 31 1 1.7418 5.0865 -0.8877 32 1 1.7333 5.0840 0.8922 33 1 4.1524 5.6265 0.9053 34 1 4.1616 5.6292 -0.8746 35 1 2.4983 7.4677 -0.8813 36 1 2.4886 7.4656 0.8988 37 1 4.8750 7.9625 -0.7583 38 1 3.2670 9.7818 -0.8731 39 1 3.2571 9.7789 0.9068 40 1 4.0673 12.1933 0.0256 41 1 4.6387 15.4817 0.0345 42 1 1.7818 -2.8318 -1.0296 43 1 2.6330 -3.0906 0.5121 44 1 0.9292 -2.5754 0.5117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156106641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:41 Heat of formation + Delta-G solvation = -13.989678 kcal Electronic energy + Delta-G solvation = -25411.066176 eV Core-core repulsion = 21399.098785 eV Total energy + Delta-G solvation = -4011.967391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.32659 -40.47065 -40.13530 -37.63566 -36.21159 -35.92929 -35.54004 -33.37812 -33.27283 -32.36618 -29.43050 -28.36275 -28.32562 -26.51241 -25.01535 -23.84473 -22.58052 -22.01114 -21.41513 -21.03293 -19.90120 -19.00942 -17.85210 -17.51900 -17.21434 -17.07584 -16.81096 -16.56716 -16.28941 -15.95301 -15.45946 -15.34064 -15.24352 -15.04964 -14.66402 -14.35694 -14.22040 -14.06971 -13.97467 -13.56023 -13.35248 -13.25289 -13.16269 -12.99001 -12.85346 -12.67592 -12.41324 -12.39262 -12.21691 -12.10523 -11.83395 -11.50731 -11.22837 -11.13813 -10.36731 -10.34487 -10.00867 -10.00268 -9.30717 -8.46215 -5.95038 0.08917 0.55856 1.11370 1.37355 1.42630 1.56978 2.05817 2.08000 2.18546 2.30472 2.95653 3.15869 3.21214 3.43484 3.54059 3.60264 3.73985 4.02666 4.14899 4.19675 4.29955 4.34801 4.40417 4.50885 4.58332 4.60255 4.61832 4.66181 4.66484 4.71859 4.80160 4.86532 5.05027 5.18180 5.22577 5.38819 5.41840 5.50938 5.90304 6.12000 6.36886 6.43427 6.60869 6.85459 7.09633 7.13309 7.56936 8.12336 8.71404 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.044893 B = 0.001438 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.561371 B =19460.384855 C =20040.242452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.131 3.869 3 C -0.136 4.136 4 C 0.604 3.396 5 O -0.559 6.559 6 N -0.710 5.710 7 C 0.129 3.871 8 C -0.119 4.119 9 C 0.065 3.935 10 N -0.686 5.686 11 C 0.065 3.935 12 C 0.436 3.564 13 O -0.624 6.624 14 N -0.573 5.573 15 C -0.335 4.335 16 H 0.078 0.922 17 C -0.012 4.012 18 N -0.920 5.920 19 Si 0.993 3.007 20 H -0.274 1.274 21 H -0.270 1.270 22 H -0.271 1.271 23 N -0.225 5.225 24 N -0.097 5.097 25 N -0.353 5.353 26 C 0.071 3.929 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.413 0.587 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.345 0.655 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.760 -33.640 -1.037 36.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.008 4.008 3 C -0.276 4.276 4 C 0.389 3.611 5 O -0.438 6.438 6 N -0.361 5.361 7 C 0.005 3.995 8 C -0.157 4.157 9 C -0.064 4.064 10 N -0.319 5.319 11 C -0.067 4.067 12 C 0.224 3.776 13 O -0.511 6.511 14 N -0.210 5.210 15 C -0.465 4.465 16 H 0.096 0.904 17 C -0.212 4.212 18 N -0.561 5.561 19 Si 0.817 3.183 20 H -0.198 1.198 21 H -0.195 1.195 22 H -0.196 1.196 23 N -0.098 5.098 24 N -0.076 5.076 25 N -0.139 5.139 26 C -0.067 4.067 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.249 0.751 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.163 0.837 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.361 -34.053 -0.353 36.582 hybrid contribution -0.238 1.143 -0.879 1.461 sum -13.598 -32.910 -1.232 35.630 Atomic orbital electron populations 1.20842 0.82147 1.06353 1.05729 1.22401 0.97530 0.85797 0.95098 1.21328 0.89545 0.95792 1.20946 1.16829 0.85339 0.83019 0.75909 1.90750 1.16531 1.84061 1.52409 1.45793 1.10534 1.06055 1.73715 1.21296 0.96760 0.78587 1.02818 1.21611 0.97201 0.93104 1.03782 1.21894 0.91497 0.91181 1.01847 1.60036 1.18258 1.01798 1.51763 1.21533 0.93735 0.88253 1.03210 1.20931 0.91540 0.82990 0.82158 1.90489 1.29373 1.74545 1.56669 1.41936 1.09213 1.04851 1.65038 1.19718 0.88186 0.88635 1.49928 0.90363 1.26032 1.01054 0.97869 0.96227 1.69678 1.23223 1.12843 1.50363 0.84869 0.77460 0.77643 0.78337 1.19838 1.19540 1.19597 1.74558 1.19834 1.04907 1.10469 1.81912 0.98027 1.03142 1.24546 1.50628 1.05231 1.09457 1.48592 1.22731 1.04185 0.73161 1.06651 0.87664 0.87005 0.88647 0.75097 0.90938 0.90945 0.90646 0.90798 0.93687 0.89977 0.83680 0.91406 0.87708 0.76923 0.91289 0.87308 0.87185 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 9.57 71.24 0.68 0.01 16 2 C 0.13 1.90 7.02 41.72 0.29 2.19 16 3 C -0.14 -2.84 6.99 40.82 0.29 -2.55 16 4 C 0.60 13.52 7.82 86.69 0.68 14.20 16 5 O -0.56 -14.14 14.72 -4.01 -0.06 -14.20 16 6 N -0.71 -14.06 5.55 -466.29 -2.59 -16.65 16 7 C 0.13 2.36 5.67 86.38 0.49 2.85 16 8 C -0.12 -2.26 5.59 30.60 0.17 -2.09 16 9 C 0.06 1.43 5.69 86.30 0.49 1.92 16 10 N -0.69 -21.48 6.12 -517.93 -3.17 -24.65 16 11 C 0.07 2.24 6.17 85.56 0.53 2.76 16 12 C 0.44 21.08 7.82 87.66 0.69 21.76 16 13 O -0.62 -35.22 15.78 -3.07 -0.05 -35.27 16 14 N -0.57 -29.80 5.29 -306.99 -1.62 -31.42 16 15 C -0.34 -19.31 9.68 84.04 0.81 -18.50 16 16 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 17 C -0.01 -0.65 5.50 84.92 0.47 -0.19 16 18 N -0.92 -49.99 13.05 21.66 0.28 -49.71 16 19 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 23 N -0.22 -5.22 12.04 -50.00 -0.60 -5.83 16 24 N -0.10 -2.01 13.78 37.02 0.51 -1.50 16 25 N -0.35 -4.45 4.03 -355.09 -1.43 -5.88 16 26 C 0.07 0.05 11.33 127.77 1.45 1.50 16 27 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.11 -0.03 7.18 -2.38 -0.02 -0.04 16 29 H 0.09 1.13 6.43 -2.39 -0.02 1.12 16 30 H 0.41 7.64 8.16 -92.71 -0.76 6.88 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.34 11.29 8.43 -89.69 -0.76 10.53 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 41 H 0.28 14.06 8.31 -92.70 -0.77 13.29 16 42 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 43 H 0.11 -0.05 8.14 -2.38 -0.02 -0.06 16 44 H 0.13 -0.70 7.16 -2.39 -0.02 -0.71 16 Total: -1.00 -79.39 380.37 -0.85 -80.24 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -1.18 Total: 35.60 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 7.03 Total: 23.87 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -8.62 Total: -135.63 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -0.11 Total: -49.47 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -79.39 -0.85 -80.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156106641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.253 kcal (2) G-P(sol) polarization free energy of solvation -79.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds