Wall clock time and date at job start Fri Apr 10 2020 18:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46698 * 2 1 4 4 C 1.50696 * 109.46999 * 119.99757 * 2 1 3 5 5 O 1.21284 * 120.00109 * 120.00318 * 4 2 1 6 6 N 1.34777 * 120.00137 * 300.00533 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47035 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.46969 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.46987 * 179.97438 * 9 8 7 11 11 C 1.46895 * 111.00171 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47199 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00083 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99867 * 180.02562 * 12 11 10 15 15 C 1.37100 * 120.00071 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99830 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00166 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99933 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99744 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47556 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46894 * 120.00181 * 19 17 15 22 22 H 1.48501 * 109.47168 * 239.99945 * 19 17 15 23 23 N 1.46500 * 109.47317 * 240.00048 * 2 1 3 24 24 C 1.34427 * 126.82119 * 324.70756 * 23 2 1 25 25 N 1.30833 * 108.07459 * 179.89518 * 24 23 2 26 26 C 1.33237 * 109.82880 * 0.38216 * 25 24 23 27 27 N 1.30714 * 108.94791 * 359.76318 * 26 25 24 28 28 H 1.09002 * 109.46838 * 60.00504 * 1 2 3 29 29 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47513 * 299.99609 * 1 2 3 31 31 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 32 32 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 33 33 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 34 34 H 1.09004 * 109.46930 * 299.99770 * 8 7 6 35 35 H 1.09004 * 109.47059 * 59.99372 * 8 7 6 36 36 H 1.08992 * 109.47534 * 299.99582 * 9 8 7 37 37 H 1.08996 * 109.47134 * 60.00388 * 9 8 7 38 38 H 1.00902 * 110.99423 * 56.04590 * 10 9 8 39 39 H 1.09002 * 109.47087 * 300.00137 * 11 10 9 40 40 H 1.09001 * 109.46853 * 60.00161 * 11 10 9 41 41 H 0.97005 * 120.00552 * 0.02562 * 14 12 11 42 42 H 0.96994 * 120.00070 * 179.97438 * 18 17 15 43 43 H 1.07999 * 125.96662 * 0.04225 * 24 23 2 44 44 H 1.08004 * 125.52169 * 179.79998 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.6858 -0.2187 4.9000 9 6 2.1957 -0.9400 6.1492 10 7 1.7068 -0.2469 7.3487 11 6 2.1783 -0.9126 8.5703 12 6 1.6575 -0.1754 9.7771 13 8 0.9616 0.8076 9.6336 14 7 1.9650 -0.6084 11.0158 15 6 1.4908 0.0620 12.1137 16 1 0.8711 0.9373 11.9859 17 6 1.8074 -0.3847 13.3908 18 7 2.5609 -1.4500 13.5463 19 14 1.1618 0.5291 14.8866 20 1 0.3426 1.6860 14.4445 21 1 0.3246 -0.3865 15.7028 22 1 2.3045 1.0138 15.7018 23 7 2.0184 -0.6906 -1.1962 24 6 1.4589 -1.7552 -1.7967 25 7 2.1942 -2.0702 -2.8319 26 6 3.2315 -1.2385 -2.9195 27 7 3.1675 -0.3757 -1.9396 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8899 31 1 1.1492 0.5389 2.5435 32 1 1.8325 -1.9681 3.6509 33 1 3.2854 -0.9398 3.6506 34 1 2.0490 0.8090 4.8996 35 1 0.5957 -0.2187 4.9003 36 1 1.8321 -1.9675 6.1494 37 1 3.2857 -0.9402 6.1491 38 1 0.7003 -0.1762 7.3404 39 1 1.8146 -1.9400 8.5877 40 1 3.2682 -0.9126 8.5865 41 1 2.5219 -1.3943 11.1306 42 1 2.7822 -1.7617 14.4377 43 1 0.5581 -2.2607 -1.4812 44 1 4.0001 -1.2716 -3.6775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156790973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:49 Heat of formation + Delta-G solvation = 19.925821 kcal Electronic energy + Delta-G solvation = -25548.362258 eV Core-core repulsion = 21537.865553 eV Total energy + Delta-G solvation = -4010.496705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.52125 -40.29630 -38.37246 -36.76564 -35.55684 -35.07862 -33.89129 -31.92949 -31.59942 -31.20519 -30.28454 -27.34357 -25.89336 -24.81614 -23.45704 -22.42943 -22.21769 -21.87354 -20.62864 -19.28086 -18.29630 -17.90190 -17.62894 -16.58293 -16.37476 -15.93710 -15.80255 -15.57677 -15.29389 -14.86790 -14.63176 -14.48563 -14.38527 -14.20630 -13.60373 -13.52978 -13.32345 -13.26103 -12.98324 -12.84091 -12.17927 -12.05530 -11.93586 -11.91305 -11.51967 -11.50152 -11.16084 -11.02785 -10.87075 -10.39935 -10.36924 -10.25628 -10.13103 -9.94544 -9.61224 -9.55348 -8.52442 -8.13644 -7.99647 -6.44921 -3.85934 1.17155 1.67346 1.96194 2.58282 2.66959 3.13968 3.24796 3.31833 3.72479 3.86713 3.90743 3.96597 4.02891 4.11040 4.23756 4.38897 4.67111 4.68860 4.71957 4.82690 4.89891 4.93067 5.10558 5.16811 5.21904 5.31725 5.36677 5.51290 5.72242 5.78663 5.81258 5.90119 5.92603 5.97005 6.04795 6.22300 6.31574 6.86752 7.11891 7.52310 7.57108 7.57534 7.69986 8.03038 8.57548 9.14555 9.50764 10.01799 10.72836 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.051245 B = 0.001417 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.262029 B =19759.525984 C =20049.359341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.133 0.867 4 C 0.501 3.499 5 O -0.520 6.520 6 N -0.720 5.720 7 C 0.121 3.879 8 C -0.129 4.129 9 C 0.062 3.938 10 N -0.669 5.669 11 C 0.051 3.949 12 C 0.440 3.560 13 O -0.584 6.584 14 N -0.563 5.563 15 C -0.300 4.300 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.901 5.901 19 Si 0.930 3.070 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 N -0.364 5.364 24 C 0.270 3.730 25 N -0.545 5.545 26 C 0.201 3.799 27 N -0.314 5.314 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.404 0.596 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.349 0.651 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.215 0.785 44 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 0.099 -28.429 28.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.151 0.849 4 C 0.284 3.716 5 O -0.395 6.395 6 N -0.373 5.373 7 C -0.003 4.003 8 C -0.167 4.167 9 C -0.068 4.068 10 N -0.302 5.302 11 C -0.082 4.082 12 C 0.225 3.775 13 O -0.469 6.469 14 N -0.200 5.200 15 C -0.430 4.430 16 H 0.122 0.878 17 C -0.179 4.179 18 N -0.542 5.542 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 N -0.155 5.155 24 C -0.027 4.027 25 N -0.272 5.272 26 C -0.102 4.102 27 N -0.140 5.140 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.239 0.761 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.168 0.832 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.231 0.769 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -2.676 0.750 -28.460 28.596 hybrid contribution -0.768 -0.630 1.224 1.577 sum -3.444 0.120 -27.236 27.453 Atomic orbital electron populations 1.22201 0.89857 1.04717 1.05335 1.21205 0.96493 0.98121 0.81019 0.84912 1.20589 0.81101 0.85222 0.84713 1.90807 1.36602 1.25705 1.86392 1.45924 1.53745 1.32320 1.05331 1.21405 0.99856 0.96366 0.82685 1.21748 1.01474 1.00974 0.92518 1.21821 1.00764 0.94923 0.89308 1.60044 1.17494 1.52754 0.99877 1.21672 1.01065 0.95498 0.89978 1.19793 0.86060 0.87529 0.84072 1.90515 1.42131 1.28395 1.85833 1.41875 1.45986 1.27812 1.04298 1.19763 1.29111 1.10698 0.83415 0.87841 1.25272 0.96922 0.96580 0.99154 1.69617 1.37030 1.23565 1.24018 0.85793 0.78530 0.79312 0.80665 1.19206 1.20762 1.20716 1.50057 1.19271 1.24486 1.21674 1.25909 0.99205 0.87773 0.89820 1.70579 1.07254 1.28709 1.20681 1.26017 0.97160 0.89984 0.97020 1.78064 1.02527 1.25320 1.08132 0.89745 0.90573 0.88733 0.76128 0.91129 0.90979 0.89973 0.91103 0.95198 0.90744 0.83182 0.93794 0.89528 0.77436 0.91886 0.76868 0.76559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.28 8.75 37.16 0.33 0.04 16 2 C 0.14 0.76 3.77 -69.08 -0.26 0.50 16 3 H 0.13 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.50 4.09 7.22 -10.99 -0.08 4.01 16 5 O -0.52 -6.88 16.42 5.55 0.09 -6.79 16 6 N -0.72 -4.27 5.45 -60.29 -0.33 -4.60 16 7 C 0.12 0.92 5.67 -4.04 -0.02 0.89 16 8 C -0.13 -1.01 5.59 -26.73 -0.15 -1.16 16 9 C 0.06 0.66 5.69 -3.82 -0.02 0.64 16 10 N -0.67 -10.00 6.13 -115.06 -0.70 -10.71 16 11 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 12 C 0.44 10.20 7.82 -10.99 -0.09 10.11 16 13 O -0.58 -15.57 15.78 5.55 0.09 -15.49 16 14 N -0.56 -14.11 5.29 -10.96 -0.06 -14.16 16 15 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 16 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 19 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 N -0.36 -3.13 3.04 -57.25 -0.17 -3.31 16 24 C 0.27 2.20 11.76 -90.66 -1.07 1.13 16 25 N -0.55 -5.57 11.19 -15.83 -0.18 -5.74 16 26 C 0.20 1.91 13.03 -91.82 -1.20 0.71 16 27 N -0.31 -3.36 12.70 29.29 0.37 -2.99 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 29 H 0.08 0.12 7.23 -51.93 -0.38 -0.25 16 30 H 0.09 -0.01 7.56 -51.93 -0.39 -0.40 16 31 H 0.40 1.17 7.89 -40.82 -0.32 0.85 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.35 5.29 8.43 -39.29 -0.33 4.96 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.22 0.89 7.33 -52.49 -0.38 0.51 16 44 H 0.22 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 381.84 15.07 5.75 5.75 Total: -1.00 -37.99 381.84 -8.55 -46.54 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.29 Total: 9.53 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -2.83 Total: 9.76 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.35 Total: -65.09 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.18 Total: -22.27 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.99 -8.55 -46.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156790973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.468 kcal (2) G-P(sol) polarization free energy of solvation -37.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds