Wall clock time and date at job start Fri Apr 10 2020 18:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39900 * 125.74705 * 2 1 4 4 C 1.30283 * 109.23055 * 180.02562 * 3 2 1 5 5 C 1.41484 * 108.19215 * 359.97438 * 4 3 2 6 6 C 1.46771 * 126.52293 * 180.02562 * 5 4 3 7 7 O 1.21684 * 120.00415 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99851 * 359.97438 * 6 5 4 9 9 C 1.46491 * 120.00327 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47256 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47072 * 179.97438 * 10 9 8 12 12 N 1.46904 * 109.47264 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00187 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47384 * 180.02562 * 13 12 11 15 15 O 1.21293 * 119.99560 * 359.97438 * 14 13 12 16 16 N 1.34768 * 120.00490 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00667 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99081 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00702 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00469 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99561 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47020 * 90.00648 * 21 19 17 23 23 H 1.48506 * 109.46939 * 210.00356 * 21 19 17 24 24 H 1.48500 * 109.47061 * 330.00405 * 21 19 17 25 25 C 1.34843 * 125.74700 * 180.02562 * 2 1 3 26 26 N 1.38012 * 126.44466 * 0.24985 * 25 2 1 27 27 H 1.09000 * 109.47059 * 269.98516 * 1 2 3 28 28 H 1.09007 * 109.47099 * 29.97993 * 1 2 3 29 29 H 1.08992 * 109.47218 * 149.98037 * 1 2 3 30 30 H 1.07997 * 125.90245 * 180.02562 * 4 3 2 31 31 H 0.96999 * 119.99510 * 359.97438 * 8 6 5 32 32 H 1.09004 * 109.46957 * 299.99854 * 9 8 6 33 33 H 1.08997 * 109.47389 * 59.99184 * 9 8 6 34 34 H 1.08991 * 109.47215 * 299.99701 * 10 9 8 35 35 H 1.08999 * 109.47249 * 60.00117 * 10 9 8 36 36 H 1.09004 * 109.47436 * 300.00179 * 11 10 9 37 37 H 1.09003 * 109.47311 * 60.00287 * 11 10 9 38 38 H 1.00901 * 110.99602 * 56.04624 * 12 11 10 39 39 H 1.08998 * 109.47374 * 300.00135 * 13 12 11 40 40 H 1.09008 * 109.46939 * 60.00057 * 13 12 11 41 41 H 0.97005 * 119.99622 * 359.97438 * 16 14 13 42 42 H 0.96998 * 120.00350 * 179.97438 * 20 19 17 43 43 H 0.96998 * 119.99770 * 179.68279 * 26 25 2 44 44 H 0.96995 * 120.00029 * 359.68672 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1354 0.0000 4 6 3.5314 0.7650 -0.0006 5 6 3.5728 -0.6492 -0.0003 6 6 4.7773 -1.4878 -0.0003 7 8 4.6745 -2.7003 -0.0005 8 7 5.9973 -0.9149 -0.0009 9 6 7.1996 -1.7519 -0.0014 10 6 8.4423 -0.8594 -0.0028 11 6 9.6980 -1.7335 -0.0026 12 7 10.8912 -0.8766 -0.0033 13 6 12.1188 -1.6835 -0.0038 14 6 13.3190 -0.7721 -0.0039 15 8 13.1666 0.4312 -0.0040 16 7 14.5615 -1.2940 -0.0048 17 6 15.6534 -0.4650 -0.0044 18 1 15.5177 0.6065 -0.0036 19 6 16.9344 -1.0030 -0.0048 20 7 17.9810 -0.2083 -0.0049 21 14 17.1689 -2.8563 -0.0053 22 1 17.2309 -3.3470 -1.4055 23 1 18.4342 -3.1953 0.6944 24 1 16.0283 -3.4998 0.6947 25 6 2.2528 -1.0944 -0.0005 26 7 1.8307 -2.4084 -0.0059 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3634 0.8902 -0.5136 29 1 -0.3633 -0.8897 -0.5141 30 1 4.3873 1.4237 -0.0003 31 1 6.0791 0.0516 -0.0018 32 1 7.2046 -2.3810 0.8887 33 1 7.2038 -2.3814 -0.8912 34 1 8.4371 -0.2306 -0.8930 35 1 8.4384 -0.2297 0.8869 36 1 9.7031 -2.3622 0.8879 37 1 9.7022 -2.3636 -0.8921 38 1 10.8781 -0.2380 0.7778 39 1 12.1407 -2.3124 0.8862 40 1 12.1397 -2.3126 -0.8938 41 1 14.6833 -2.2564 -0.0051 42 1 18.8752 -0.5840 -0.0048 43 1 2.4822 -3.1270 -0.0104 44 1 0.8826 -2.6132 -0.0053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156936608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:59 Heat of formation + Delta-G solvation = 5.388388 kcal Electronic energy + Delta-G solvation = -25456.834848 eV Core-core repulsion = 21445.707753 eV Total energy + Delta-G solvation = -4011.127095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73228 -39.32616 -38.47473 -36.54882 -35.48501 -34.66615 -33.86680 -33.52873 -31.70538 -31.36562 -29.14304 -27.77237 -26.92683 -24.79932 -23.33231 -22.53538 -21.72504 -21.16070 -20.33366 -19.34905 -18.47060 -18.25588 -17.24347 -16.58035 -16.37976 -16.22898 -16.00837 -15.66357 -15.28675 -15.06011 -14.87257 -14.27711 -14.24086 -13.96694 -13.73094 -13.48567 -13.33332 -13.21926 -13.11267 -12.80556 -12.33769 -12.08763 -11.86887 -11.71994 -11.65757 -11.48833 -11.25371 -11.16375 -10.95214 -10.57878 -10.04461 -9.95785 -9.55512 -9.50035 -9.21893 -8.57640 -8.25965 -8.17732 -8.12085 -6.29430 -3.80858 1.44657 1.76640 1.89181 3.04189 3.08703 3.10695 3.16710 3.19455 3.32598 3.76237 3.97512 4.10917 4.14764 4.46062 4.56551 4.75269 4.79436 4.81775 4.86924 5.00593 5.03643 5.07386 5.23610 5.26580 5.43268 5.53865 5.64008 5.66646 5.83309 5.83786 5.94480 6.01468 6.07650 6.11629 6.31853 6.82607 6.94289 7.10726 7.31782 7.47922 7.58828 7.60715 8.16094 8.16416 8.61675 8.96779 9.44333 9.84760 10.83720 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.041703 B = 0.001491 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.255427 B =18774.087348 C =19406.961227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.402 5.402 3 N -0.304 5.304 4 C 0.114 3.886 5 C -0.374 4.374 6 C 0.605 3.395 7 O -0.571 6.571 8 N -0.727 5.727 9 C 0.125 3.875 10 C -0.130 4.130 11 C 0.063 3.937 12 N -0.670 5.670 13 C 0.048 3.952 14 C 0.450 3.550 15 O -0.565 6.565 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.882 5.882 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.435 3.565 26 N -0.830 5.830 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.190 0.810 31 H 0.400 0.600 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.351 0.649 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.371 0.629 42 H 0.273 0.727 43 H 0.432 0.568 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.938 -6.087 0.812 36.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.190 5.190 3 N -0.123 5.123 4 C -0.076 4.076 5 C -0.393 4.393 6 C 0.395 3.605 7 O -0.452 6.452 8 N -0.377 5.377 9 C 0.001 3.999 10 C -0.168 4.168 11 C -0.067 4.067 12 N -0.302 5.302 13 C -0.085 4.085 14 C 0.236 3.764 15 O -0.447 6.447 16 N -0.230 5.230 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.522 5.522 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.195 1.195 25 C 0.199 3.801 26 N -0.380 5.380 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.206 0.794 31 H 0.234 0.766 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.170 0.830 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.269 0.731 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -36.761 -4.982 0.132 37.097 hybrid contribution 0.804 -2.380 0.914 2.673 sum -35.957 -7.362 1.046 36.718 Atomic orbital electron populations 1.21825 0.74128 1.04601 1.03484 1.48193 1.06475 1.02351 1.62023 1.77154 1.01821 1.05307 1.27975 1.23806 0.95316 0.93383 0.95110 1.19266 0.90854 0.93664 1.35546 1.16919 0.82152 0.86623 0.74809 1.90675 1.86983 1.14361 1.53201 1.45647 1.05299 1.10363 1.76393 1.21261 0.82897 0.93387 1.02377 1.21746 0.92632 0.98678 1.03768 1.21833 0.89361 0.94774 1.00760 1.60034 0.99801 1.18891 1.51491 1.21703 0.90098 0.95329 1.01345 1.19722 0.83592 0.89193 0.83936 1.90563 1.85390 1.15021 1.53705 1.42207 1.05829 1.07881 1.67124 1.19439 0.82600 0.93316 1.48061 0.86282 1.25032 0.95151 0.98294 0.97642 1.69619 0.98303 1.34827 1.49427 0.86668 0.78555 0.85227 0.78911 1.19593 1.20209 1.19524 1.18062 0.89511 0.81949 0.90535 1.41810 1.11286 1.02734 1.82135 0.90642 0.88600 0.90069 0.79351 0.76573 0.91604 0.91372 0.90034 0.91185 0.95249 0.90780 0.82999 0.93731 0.89420 0.79675 0.91627 0.73143 0.77203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.31 11.25 59.85 0.67 0.99 16 2 N -0.40 -3.04 4.00 -66.82 -0.27 -3.30 16 3 N -0.30 -2.85 12.47 30.88 0.38 -2.47 16 4 C 0.11 0.94 11.49 -16.97 -0.20 0.75 16 5 C -0.37 -3.57 6.15 -104.82 -0.64 -4.21 16 6 C 0.60 6.54 7.79 -12.81 -0.10 6.44 16 7 O -0.57 -7.59 15.14 5.20 0.08 -7.51 16 8 N -0.73 -6.32 5.55 -61.59 -0.34 -6.66 16 9 C 0.12 1.14 5.67 -4.05 -0.02 1.11 16 10 C -0.13 -1.18 5.59 -26.73 -0.15 -1.33 16 11 C 0.06 0.69 5.69 -3.82 -0.02 0.67 16 12 N -0.67 -10.12 6.13 -115.05 -0.70 -10.82 16 13 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 14 C 0.45 10.25 7.82 -10.99 -0.09 10.16 16 15 O -0.56 -15.22 15.78 5.55 0.09 -15.13 16 16 N -0.59 -14.15 5.09 -10.97 -0.06 -14.21 16 17 C -0.31 -8.69 10.16 -14.93 -0.15 -8.85 16 18 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 19 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16 21 Si 0.88 19.43 27.74 -169.99 -4.71 14.71 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 25 C 0.43 3.63 7.98 -153.78 -1.23 2.40 16 26 N -0.83 -4.77 9.02 31.40 0.28 -4.49 16 27 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.05 7.45 -51.93 -0.39 -0.33 16 30 H 0.19 0.92 7.50 -52.49 -0.39 0.53 16 31 H 0.40 2.54 7.42 -40.82 -0.30 2.24 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.35 5.44 8.43 -39.29 -0.33 5.11 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.30 8.14 -51.92 -0.42 0.87 16 41 H 0.37 7.77 5.76 -40.82 -0.24 7.54 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.43 3.04 7.01 -40.82 -0.29 2.75 16 44 H 0.40 0.95 8.04 -40.82 -0.33 0.62 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -37.78 375.59 -6.91 -44.69 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -6.05 Total: 14.65 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -2.05 Total: 9.95 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: 0.07 Total: -67.02 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.17 Total: -22.64 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.78 -6.91 -44.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156936608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.083 kcal (2) G-P(sol) polarization free energy of solvation -37.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds