Wall clock time and date at job start Fri Apr 10 2020 18:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42905 * 109.46952 * 92.50591 * 3 2 1 5 5 C 1.42907 * 113.99749 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46739 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46624 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00521 * 359.73045 * 7 6 5 9 9 N 1.34784 * 119.99774 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99971 * 359.72768 * 9 7 6 11 11 C 1.50703 * 109.47219 * 89.99688 * 10 9 7 12 12 H 1.07996 * 119.99587 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00012 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99655 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99994 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.46889 * 90.00281 * 15 13 11 17 17 H 1.48510 * 109.46825 * 210.00042 * 15 13 11 18 18 H 1.48494 * 109.47200 * 329.99914 * 15 13 11 19 19 C 1.46499 * 119.99893 * 179.72962 * 9 7 6 20 20 C 1.52996 * 109.47198 * 90.00083 * 19 9 7 21 21 N 1.46902 * 109.46980 * 179.97438 * 20 19 9 22 22 C 1.47015 * 111.00009 * 293.63325 * 21 20 19 23 23 C 1.53100 * 109.25969 * 177.60615 * 22 21 20 24 24 O 1.43020 * 109.25371 * 56.84894 * 23 22 21 25 25 C 1.43015 * 113.74045 * 301.33009 * 24 23 22 26 26 C 1.47013 * 110.99990 * 170.00210 * 21 20 19 27 27 H 4.38445 * 5.44504 * 180.02562 * 4 1 2 28 28 H 1.08993 * 109.47721 * 332.49934 * 3 2 1 29 29 H 1.09009 * 109.47007 * 212.49958 * 3 2 1 30 30 H 1.09001 * 109.46987 * 60.00107 * 5 4 3 31 31 H 1.08993 * 109.47233 * 299.99736 * 5 4 3 32 32 H 1.09001 * 109.46782 * 60.00609 * 6 5 4 33 33 H 1.08993 * 109.47555 * 300.00166 * 6 5 4 34 34 H 1.08998 * 109.47416 * 209.99869 * 10 9 7 35 35 H 1.09008 * 109.47058 * 330.00468 * 10 9 7 36 36 H 0.97008 * 119.99482 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.46865 * 210.00034 * 19 9 7 38 38 H 1.08998 * 109.47058 * 329.99547 * 19 9 7 39 39 H 1.08997 * 109.47172 * 299.99762 * 20 19 9 40 40 H 1.08998 * 109.47554 * 59.99767 * 20 19 9 41 41 H 1.09006 * 109.50603 * 297.54506 * 22 21 20 42 42 H 1.09003 * 109.50663 * 57.67164 * 22 21 20 43 43 H 1.08994 * 109.50511 * 296.91476 * 23 22 21 44 44 H 1.08995 * 109.54235 * 176.80143 * 23 22 21 45 45 H 1.08996 * 109.50161 * 298.73680 * 25 24 23 46 46 H 1.09002 * 109.54009 * 178.63053 * 25 24 23 47 47 H 1.08999 * 109.50620 * 302.32609 * 26 21 20 48 48 H 1.08999 * 109.51226 * 62.41126 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.0598 -1.3460 5 6 4.5469 0.0659 -1.4587 6 6 4.9413 0.1300 -2.9357 7 6 6.4436 0.1372 -3.0544 8 8 7.1311 0.1000 -2.0560 9 7 7.0232 0.1908 -4.2701 10 6 6.1928 0.2362 -5.4762 11 6 5.9000 1.6713 -5.8308 12 1 6.2929 2.4696 -5.2188 13 6 5.1298 1.9649 -6.9361 14 7 4.8748 3.2174 -7.2458 15 14 4.4485 0.5838 -7.9934 16 1 3.1150 0.1794 -7.4803 17 1 4.3177 1.0530 -9.3964 18 1 5.3713 -0.5785 -7.9442 19 6 8.4836 0.2037 -4.3853 20 6 9.0000 -1.2330 -4.4852 21 7 10.4643 -1.2200 -4.6014 22 6 10.8866 -0.6144 -5.8727 23 6 12.4160 -0.5667 -5.9260 24 8 12.9352 -1.8886 -5.7571 25 6 12.5440 -2.5082 -4.5289 26 6 11.0160 -2.5755 -4.4616 27 1 -1.0500 0.0002 0.0000 28 1 3.0098 -0.9106 0.4745 29 1 3.0089 0.8676 0.5522 30 1 4.9504 -0.8439 -1.0144 31 1 4.9489 0.9343 -0.9369 32 1 4.5377 1.0398 -3.3803 33 1 4.5393 -0.7385 -3.4572 34 1 6.7228 -0.2410 -6.3005 35 1 5.2564 -0.2909 -5.2926 36 1 4.3325 3.4240 -8.0232 37 1 8.7726 0.7567 -5.2791 38 1 8.9131 0.6840 -3.5062 39 1 8.7110 -1.7859 -3.5915 40 1 8.5704 -1.7133 -5.3644 41 1 10.5119 -1.2128 -6.7032 42 1 10.4883 0.3978 -5.9438 43 1 12.7881 0.0753 -5.1277 44 1 12.7350 -0.1708 -6.8901 45 1 12.9200 -1.9226 -3.6900 46 1 12.9552 -3.5166 -4.4822 47 1 10.7121 -2.9949 -3.5025 48 1 10.6428 -3.2055 -5.2690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125479104.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:44 Heat of formation + Delta-G solvation = -81.391785 kcal Electronic energy + Delta-G solvation = -27660.210591 eV Core-core repulsion = 23716.568018 eV Total energy + Delta-G solvation = -3943.642574 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.12130 -40.41481 -39.06492 -37.47605 -36.41475 -34.58015 -34.42487 -32.78774 -32.16957 -31.12457 -29.54219 -28.08158 -27.13574 -25.03031 -24.86367 -24.31850 -22.84651 -21.36506 -20.02587 -19.26208 -19.10824 -18.40385 -17.79574 -17.39764 -17.18850 -17.12280 -16.84570 -16.36694 -16.15355 -15.97959 -15.87876 -15.82716 -15.46729 -14.92541 -14.68094 -14.43653 -14.37003 -14.06874 -13.67747 -13.55274 -13.43665 -13.17268 -12.92553 -12.68799 -12.57133 -12.45010 -12.35057 -12.28739 -12.11928 -11.84858 -11.71559 -11.53668 -11.45971 -11.44643 -10.88179 -10.77240 -10.69794 -10.55943 -9.60129 -9.40268 -8.31032 -6.38630 1.39302 1.40055 1.44673 1.48840 1.63997 1.81991 2.06139 2.32913 2.76623 2.93889 3.03152 3.04025 3.55300 3.74641 3.83946 3.91672 3.98280 4.04562 4.06280 4.17320 4.19145 4.30913 4.33188 4.37341 4.43693 4.45223 4.48134 4.57867 4.64275 4.71955 4.76180 4.78220 4.81334 4.86191 4.90398 4.92746 4.98743 5.02135 5.02705 5.42395 5.58339 5.87052 5.91774 6.10573 6.15218 6.16440 6.53408 6.59593 6.67718 7.17375 7.29579 8.85231 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.003378 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.240037 B = 8285.841539 C =10722.232891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.240 4.240 3 C 0.165 3.835 4 O -0.405 6.405 5 C 0.091 3.909 6 C -0.135 4.135 7 C 0.523 3.477 8 O -0.583 6.583 9 N -0.593 5.593 10 C 0.217 3.783 11 C -0.541 4.541 12 H 0.031 0.969 13 C 0.022 3.978 14 N -0.941 5.941 15 Si 0.937 3.063 16 H -0.263 1.263 17 H -0.285 1.285 18 H -0.239 1.239 19 C 0.127 3.873 20 C 0.060 3.940 21 N -0.541 5.541 22 C 0.011 3.989 23 C 0.067 3.933 24 O -0.403 6.403 25 C 0.065 3.935 26 C 0.018 3.982 27 H 0.256 0.744 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.268 0.732 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.114 0.886 45 H 0.062 0.938 46 H 0.120 0.880 47 H 0.095 0.905 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.961 -12.925 8.001 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.240 4.240 3 C 0.090 3.910 4 O -0.325 6.325 5 C 0.014 3.986 6 C -0.174 4.174 7 C 0.313 3.687 8 O -0.465 6.465 9 N -0.323 5.323 10 C 0.095 3.905 11 C -0.579 4.579 12 H 0.050 0.950 13 C -0.178 4.178 14 N -0.580 5.580 15 Si 0.760 3.240 16 H -0.188 1.188 17 H -0.211 1.211 18 H -0.162 1.162 19 C 0.004 3.996 20 C -0.069 4.069 21 N -0.267 5.267 22 C -0.117 4.117 23 C -0.010 4.010 24 O -0.322 6.322 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.272 0.728 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.132 0.868 45 H 0.080 0.920 46 H 0.138 0.862 47 H 0.113 0.887 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.444 -12.630 8.456 16.145 hybrid contribution -1.101 -0.016 -1.064 1.531 sum 4.343 -12.645 7.393 15.278 Atomic orbital electron populations 1.25866 0.96790 0.99371 0.95809 1.23121 0.94921 1.02155 1.03769 1.19278 0.84716 1.03051 0.83948 1.87873 1.21973 1.95681 1.27012 1.22053 0.79475 1.01882 0.95156 1.21420 0.91809 1.06052 0.98139 1.20497 0.90625 0.75027 0.82586 1.90606 1.66096 1.53072 1.36768 1.47875 1.06873 1.70839 1.06714 1.19673 0.91489 0.95759 0.83543 1.21485 1.32760 0.92142 1.11527 0.95027 1.25751 0.95736 0.97853 0.98418 1.70051 1.39517 1.20219 1.28223 0.85871 0.80186 0.80018 0.77947 1.18778 1.21128 1.16166 1.21225 0.79205 0.96644 1.02513 1.22246 0.87023 0.96827 1.00824 1.62124 1.09237 1.21127 1.34243 1.22919 0.97832 1.00948 0.90015 1.22735 0.90864 0.84048 1.03338 1.87945 1.73529 1.30247 1.40475 1.22794 0.92237 0.99642 0.86535 1.22854 0.96878 0.88798 1.02456 0.72813 0.88868 0.89661 0.91169 0.92691 0.88856 0.87146 0.93756 0.93299 0.92273 0.90783 0.91093 0.90826 0.94595 0.94331 0.89487 0.91909 0.86779 0.91982 0.86242 0.88680 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 19.25 74.32 1.43 -1.86 16 2 C -0.24 -6.01 13.73 31.13 0.43 -5.58 16 3 C 0.17 3.97 6.41 70.18 0.45 4.42 16 4 O -0.40 -12.57 10.30 -148.98 -1.53 -14.10 16 5 C 0.09 2.77 5.23 71.98 0.38 3.15 16 6 C -0.13 -4.70 4.63 29.85 0.14 -4.56 16 7 C 0.52 20.26 7.67 87.65 0.67 20.93 16 8 O -0.58 -24.13 15.56 -3.04 -0.05 -24.18 16 9 N -0.59 -23.14 2.46 -826.15 -2.03 -25.17 16 10 C 0.22 9.07 4.03 85.63 0.35 9.42 16 11 C -0.54 -28.33 9.82 25.60 0.25 -28.08 16 12 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 13 C 0.02 1.16 5.47 84.65 0.46 1.62 16 14 N -0.94 -55.57 13.96 21.45 0.30 -55.27 16 15 Si 0.94 39.62 27.47 68.60 1.88 41.50 16 16 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 17 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.24 -8.98 6.54 99.48 0.65 -8.33 16 19 C 0.13 4.48 5.34 86.38 0.46 4.94 16 20 C 0.06 1.75 5.28 86.30 0.46 2.21 16 21 N -0.54 -14.07 4.73 -895.21 -4.23 -18.31 16 22 C 0.01 0.27 5.44 86.31 0.47 0.74 16 23 C 0.07 1.41 7.01 72.02 0.50 1.91 16 24 O -0.40 -9.23 10.83 -148.98 -1.61 -10.84 16 25 C 0.06 1.20 7.01 72.01 0.50 1.71 16 26 C 0.02 0.38 5.64 86.31 0.49 0.87 16 27 H 0.26 2.79 7.80 -4.42 -0.03 2.75 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.07 1.93 8.10 -2.39 -0.02 1.91 16 31 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 32 H 0.09 3.73 7.99 -2.39 -0.02 3.71 16 33 H 0.11 3.48 7.39 -2.39 -0.02 3.46 16 34 H 0.04 1.77 7.13 -2.39 -0.02 1.76 16 35 H 0.05 1.91 5.87 -2.38 -0.01 1.90 16 36 H 0.27 14.84 8.31 -92.70 -0.77 14.07 16 37 H 0.07 2.66 6.44 -2.39 -0.02 2.64 16 38 H 0.07 2.68 7.42 -2.39 -0.02 2.66 16 39 H 0.07 2.22 8.04 -2.39 -0.02 2.20 16 40 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 41 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.09 2.23 6.38 -2.39 -0.02 2.22 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 48 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -68.46 396.40 1.03 -67.42 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.87 Total: 27.12 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 7.44 Total: 11.83 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -5.96 Total: -98.75 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -3.19 Total: -49.12 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.88 Total: 41.50 kcal Total: -68.46 1.03 -67.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125479104.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.971 kcal (2) G-P(sol) polarization free energy of solvation -68.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds