Wall clock time and date at job start Fri Apr 10 2020 18:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46964 * 2 1 4 4 C 1.53000 * 109.46767 * 240.00285 * 2 1 3 5 5 C 1.50696 * 109.47017 * 119.99866 * 2 1 3 6 6 N 1.30123 * 121.06231 * 239.97508 * 5 2 1 7 7 S 1.69949 * 105.76239 * 179.75912 * 6 5 2 8 8 C 1.72303 * 94.57682 * 0.34647 * 7 6 5 9 9 N 1.38314 * 127.50411 * 179.91509 * 8 7 6 10 10 C 1.46492 * 120.00468 * 359.68557 * 9 8 7 11 11 C 1.52997 * 109.47461 * 180.02562 * 10 9 8 12 12 C 1.53041 * 109.45926 * 184.99856 * 11 10 9 13 13 C 1.53192 * 109.31335 * 178.61294 * 12 11 10 14 14 N 1.46923 * 108.89264 * 54.56274 * 13 12 11 15 15 C 1.36934 * 120.63052 * 126.47035 * 14 13 12 16 16 H 1.07997 * 119.99978 * 331.92274 * 15 14 13 17 17 C 1.38810 * 120.00385 * 151.92570 * 15 14 13 18 18 N 1.31626 * 119.99638 * 343.17619 * 17 15 14 19 19 Si 1.86793 * 120.00463 * 163.17439 * 17 15 14 20 20 H 1.48508 * 109.46924 * 60.00059 * 19 17 15 21 21 H 1.48497 * 109.47413 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47362 * 300.00284 * 19 17 15 23 23 C 1.46963 * 118.71481 * 306.64195 * 14 13 12 24 24 C 1.53034 * 109.46256 * 64.92884 * 11 10 9 25 25 N 1.31288 * 121.05954 * 60.00083 * 5 2 1 26 26 H 1.09003 * 109.47092 * 299.99998 * 1 2 3 27 27 H 1.09005 * 109.47342 * 59.99745 * 1 2 3 28 28 H 1.08996 * 109.47691 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47242 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47469 * 300.00134 * 3 2 1 31 31 H 1.09003 * 109.47214 * 60.00077 * 3 2 1 32 32 H 1.09004 * 109.46939 * 299.99611 * 4 2 1 33 33 H 1.08996 * 109.47249 * 60.00121 * 4 2 1 34 34 H 1.08997 * 109.46546 * 180.02562 * 4 2 1 35 35 H 0.97001 * 119.99733 * 179.68109 * 9 8 7 36 36 H 1.09007 * 109.47370 * 59.99563 * 10 9 8 37 37 H 1.09001 * 109.47040 * 300.00328 * 10 9 8 38 38 H 1.08998 * 109.44585 * 304.95884 * 11 10 9 39 39 H 1.09005 * 109.50147 * 58.66087 * 12 11 10 40 40 H 1.08997 * 109.50434 * 298.56530 * 12 11 10 41 41 H 1.09000 * 109.59176 * 174.42588 * 13 12 11 42 42 H 1.09002 * 109.58672 * 294.70754 * 13 12 11 43 43 H 0.97000 * 119.99586 * 180.02562 * 18 17 15 44 44 H 1.08993 * 109.46933 * 293.56921 * 23 14 13 45 45 H 1.09000 * 109.71279 * 173.28325 * 23 14 13 46 46 H 1.09000 * 109.49720 * 301.33873 * 24 11 10 47 47 H 1.09010 * 109.49370 * 61.40161 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 2.7819 -0.0981 2.1002 7 16 3.1112 -1.2425 3.3127 8 6 2.2121 -2.5042 2.5587 9 7 2.0331 -3.7982 3.0133 10 6 2.6524 -4.2254 4.2702 11 6 2.3009 -5.6898 4.5402 12 6 2.8425 -6.0996 5.9116 13 6 2.4588 -7.5557 6.1934 14 7 2.9297 -8.3951 5.0834 15 6 3.7156 -9.4909 5.3220 16 1 4.3587 -9.5156 6.1892 17 6 3.6857 -10.5698 4.4491 18 7 2.6916 -10.6988 3.5961 19 14 5.0562 -11.8385 4.4850 20 1 5.1144 -12.4663 5.8296 21 1 4.7911 -12.8826 3.4628 22 1 6.3522 -11.1757 4.1917 23 6 2.5442 -8.0338 3.7120 24 6 2.9270 -6.5723 3.4581 25 7 1.7279 -1.9669 1.4589 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2073 -2.1392 34 1 3.1299 -0.7216 -1.2490 35 1 1.4974 -4.4229 2.4997 36 1 2.2818 -3.6058 5.0869 37 1 3.7347 -4.1196 4.1963 38 1 1.2178 -5.8114 4.5264 39 1 2.4140 -5.4554 6.6795 40 1 3.9280 -6.0017 5.9183 41 1 2.9250 -7.8833 7.1226 42 1 1.3753 -7.6380 6.2796 43 1 2.6705 -11.4530 2.9864 44 1 1.4676 -8.1555 3.5933 45 1 3.0651 -8.6765 3.0023 46 1 2.5586 -6.2646 2.4795 47 1 4.0118 -6.4694 3.4874 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159935421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:47 Heat of formation + Delta-G solvation = 54.175762 kcal Electronic energy + Delta-G solvation = -25138.959057 eV Core-core repulsion = 21676.240755 eV Total energy + Delta-G solvation = -3462.718302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.52668 -38.53162 -36.78953 -35.56719 -33.33100 -31.58083 -30.47936 -29.95854 -27.52912 -27.47883 -26.86361 -24.97448 -23.91204 -22.45765 -21.79769 -21.24373 -19.29194 -18.89297 -18.45468 -17.11624 -16.73189 -15.72672 -15.61616 -15.12198 -14.87669 -14.65949 -14.06770 -14.01455 -13.78251 -13.61010 -13.33772 -12.76057 -12.64837 -12.50369 -12.43779 -12.24811 -12.20670 -11.84641 -11.65028 -11.48852 -11.31323 -11.23637 -11.07552 -11.04557 -10.97565 -10.76329 -10.63505 -10.36413 -10.31566 -9.98705 -9.68228 -9.63216 -9.56730 -9.42022 -8.52527 -8.22550 -6.73829 -5.84698 -3.27487 0.74154 0.97658 1.77043 2.66704 2.68201 3.34716 3.40945 3.41867 4.05485 4.44892 4.61409 4.72778 4.73561 4.87161 4.95354 5.16574 5.31507 5.33063 5.42190 5.42767 5.45372 5.50378 5.59740 5.62702 5.65677 5.69408 5.73224 5.81398 5.85494 5.98437 6.00362 6.07907 6.15852 6.18062 6.30456 6.43107 6.47868 6.55334 6.61812 6.69996 6.87798 7.05935 7.27452 7.57379 7.73996 7.75805 8.39367 9.15523 9.78764 10.35046 11.24024 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.023320 B = 0.002385 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.402375 B =11736.583738 C =12276.751742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.020 3.980 3 C -0.133 4.133 4 C -0.135 4.135 5 C 0.318 3.682 6 N -0.503 5.503 7 S 0.163 5.837 8 C 0.350 3.650 9 N -0.657 5.657 10 C 0.118 3.882 11 C -0.088 4.088 12 C -0.124 4.124 13 C 0.146 3.854 14 N -0.592 5.592 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.903 3.097 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.171 3.829 24 C -0.137 4.137 25 N -0.586 5.586 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.418 0.582 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.018 0.982 43 H 0.255 0.745 44 H 0.018 0.982 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.973 20.786 -4.635 21.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.014 3.986 3 C -0.191 4.191 4 C -0.194 4.194 5 C 0.028 3.972 6 N -0.336 5.336 7 S 0.297 5.703 8 C -0.030 4.030 9 N -0.295 5.295 10 C -0.005 4.005 11 C -0.107 4.107 12 C -0.164 4.164 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.732 3.268 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.045 3.955 24 C -0.176 4.176 25 N -0.322 5.322 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.258 0.742 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.065 0.935 44 H 0.036 0.964 45 H 0.106 0.894 46 H 0.066 0.934 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.237 21.429 -3.955 21.906 hybrid contribution -0.065 -1.510 -0.799 1.710 sum -2.302 19.919 -4.754 20.607 Atomic orbital electron populations 1.21827 0.92448 1.03077 1.01944 1.19226 0.96246 0.94487 0.88593 1.21771 1.01792 0.93530 1.01971 1.21831 1.01114 1.01152 0.95268 1.22993 0.91525 0.86401 0.96329 1.77540 1.26735 1.22741 1.06560 1.84976 1.53343 1.00332 1.31638 1.25221 0.93171 0.92762 0.91836 1.44209 1.53996 1.06252 1.25080 1.22024 0.97973 0.97574 0.82938 1.21295 1.01022 0.90502 0.97880 1.22001 1.00958 0.99336 0.94129 1.20871 0.96318 0.88707 0.92167 1.44040 1.58829 1.28451 1.00165 1.19135 1.15694 0.93176 1.10405 0.91717 1.25054 0.97398 0.96953 1.00197 1.70016 1.29329 1.30901 1.24488 0.86367 0.82071 0.80928 0.77387 1.20839 1.21618 1.21014 1.20758 0.97330 0.89714 0.87689 1.22286 1.00375 0.99350 0.95629 1.67245 1.33421 1.11663 1.19860 0.92719 0.91584 0.91329 0.91983 0.91998 0.92009 0.91295 0.91582 0.92664 0.74246 0.91146 0.90846 0.90767 0.92716 0.91854 0.92578 0.96449 0.93541 0.96424 0.89415 0.93428 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.39 37.16 0.31 -0.89 16 2 C 0.02 0.20 0.95 -155.66 -0.15 0.05 16 3 C -0.13 -1.19 7.73 37.16 0.29 -0.90 16 4 C -0.14 -1.24 8.39 37.16 0.31 -0.93 16 5 C 0.32 4.15 6.07 -159.04 -0.97 3.18 16 6 N -0.50 -6.94 11.01 29.53 0.33 -6.61 16 7 S 0.16 2.06 23.17 -107.50 -2.49 -0.43 16 8 C 0.35 4.55 8.57 -86.35 -0.74 3.81 16 9 N -0.66 -7.75 5.42 -61.57 -0.33 -8.08 16 10 C 0.12 1.34 5.12 -4.05 -0.02 1.32 16 11 C -0.09 -1.22 2.19 -90.58 -0.20 -1.42 16 12 C -0.12 -1.85 5.36 -26.61 -0.14 -1.99 16 13 C 0.15 2.81 6.51 -3.71 -0.02 2.79 16 14 N -0.59 -14.04 3.00 -172.30 -0.52 -14.56 16 15 C -0.25 -6.75 9.58 -15.06 -0.14 -6.90 16 16 H 0.07 1.69 7.88 -52.49 -0.41 1.27 16 17 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 18 N -0.90 -25.60 11.20 55.49 0.62 -24.98 16 19 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.17 3.81 5.30 -3.69 -0.02 3.79 16 24 C -0.14 -2.31 5.25 -26.62 -0.14 -2.45 16 25 N -0.59 -8.04 10.31 -14.59 -0.15 -8.19 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.42 4.83 7.77 -40.82 -0.32 4.52 16 36 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 46 H 0.05 0.72 7.15 -51.93 -0.37 0.35 16 47 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -29.39 382.66 -11.67 -41.06 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.14 Total: 0.31 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.72 Total: -0.53 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.05 Total: -62.41 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.49 Total: -0.43 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.39 -11.67 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159935421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.232 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds