Wall clock time and date at job start Fri Apr 10 2020 18:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46816 * 2 1 4 4 C 1.53005 * 109.47139 * 174.99566 * 3 2 1 5 5 C 1.52994 * 109.47355 * 185.00059 * 4 3 2 6 6 N 1.46498 * 109.47010 * 294.99387 * 3 2 1 7 7 C 1.46762 * 124.34504 * 120.00061 * 6 3 2 8 8 C 1.54479 * 105.47366 * 196.99278 * 7 6 3 9 9 H 1.08998 * 110.97043 * 216.46839 * 8 7 6 10 10 C 1.50696 * 110.96803 * 92.73884 * 8 7 6 11 11 O 1.21280 * 120.00144 * 0.02562 * 10 8 7 12 12 N 1.34782 * 120.00307 * 180.02562 * 10 8 7 13 13 C 1.47065 * 136.05260 * 359.63504 * 12 10 8 14 14 C 1.53239 * 88.08068 * 207.20266 * 13 12 10 15 15 O 1.42900 * 114.02020 * 87.71409 * 14 13 12 16 16 C 1.50697 * 114.32540 * 220.46943 * 14 13 12 17 17 H 1.08000 * 120.00135 * 99.23395 * 16 14 13 18 18 C 1.37878 * 120.00119 * 279.23565 * 16 14 13 19 19 N 1.31513 * 120.00198 * 10.19154 * 18 16 14 20 20 Si 1.86804 * 120.00153 * 190.19603 * 18 16 14 21 21 H 1.48490 * 109.47353 * 84.99241 * 20 18 16 22 22 H 1.48500 * 109.46988 * 204.99815 * 20 18 16 23 23 H 1.48503 * 109.46763 * 324.99350 * 20 18 16 24 24 C 1.47064 * 136.06114 * 179.97438 * 12 10 8 25 25 C 1.54791 * 101.69106 * 334.39431 * 8 7 6 26 26 C 1.34412 * 124.34959 * 299.97419 * 6 3 2 27 27 O 1.21278 * 124.94384 * 359.57844 * 26 6 3 28 28 H 1.09010 * 109.46930 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47475 * 300.00194 * 1 2 3 30 30 H 1.09001 * 109.47060 * 60.00784 * 1 2 3 31 31 H 1.08997 * 109.47976 * 239.99968 * 2 1 3 32 32 H 1.09001 * 109.47060 * 119.99216 * 2 1 3 33 33 H 1.09006 * 109.47069 * 54.99925 * 3 2 1 34 34 H 1.09005 * 109.46754 * 305.00258 * 4 3 2 35 35 H 1.09002 * 109.46732 * 64.99611 * 4 3 2 36 36 H 1.09004 * 109.47170 * 59.99711 * 5 4 3 37 37 H 1.09001 * 109.47398 * 180.02562 * 5 4 3 38 38 H 1.09006 * 109.46971 * 300.00214 * 5 4 3 39 39 H 1.08996 * 110.24996 * 315.99411 * 7 6 3 40 40 H 1.09006 * 110.24666 * 77.90998 * 7 6 3 41 41 H 1.09002 * 113.46765 * 321.93166 * 13 12 10 42 42 H 1.08996 * 113.47202 * 92.37437 * 13 12 10 43 43 H 0.96701 * 113.99970 * 90.40265 * 15 14 13 44 44 H 0.96994 * 120.00310 * 179.97438 * 19 18 16 45 45 H 1.08997 * 113.46781 * 267.62787 * 24 12 10 46 46 H 1.09005 * 113.46549 * 38.06301 * 24 12 10 47 47 H 1.08993 * 110.61362 * 266.39716 * 25 8 7 48 48 H 1.09002 * 110.42752 * 143.70608 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5648 1.4445 0.1258 5 6 4.0644 2.8851 0.2513 6 7 1.6524 2.0975 -1.2519 7 6 0.8075 3.2947 -1.3330 8 6 0.3199 3.3566 -2.7975 9 1 0.2634 4.3876 -3.1466 10 6 -1.0093 2.6638 -2.9530 11 8 -1.5444 2.1554 -1.9907 12 7 -1.6036 2.6092 -4.1615 13 6 -1.2938 3.0899 -5.5164 14 6 -2.8009 3.1321 -5.7903 15 8 -3.4254 4.3626 -5.4190 16 6 -3.1963 2.6502 -7.1623 17 1 -3.5655 1.6440 -7.2957 18 6 -3.0866 3.4937 -8.2474 19 7 -2.4551 4.6410 -8.1273 20 14 -3.8352 3.0070 -9.8883 21 1 -5.2686 3.3936 -9.9126 22 1 -3.1162 3.7021 -10.9860 23 1 -3.7155 1.5380 -10.0706 24 6 -2.8499 2.0481 -4.7044 25 6 1.4421 2.5864 -3.5345 26 6 2.0254 1.6793 -2.4736 27 8 2.7312 0.7178 -2.6932 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6052 1.9816 0.8419 34 1 3.8569 0.8801 1.0115 35 1 4.0029 0.9837 -0.7595 36 1 3.6261 3.3459 1.1366 37 1 5.1507 2.8865 0.3404 38 1 3.7721 3.4494 -0.6344 39 1 -0.0420 3.2035 -0.6561 40 1 1.3891 4.1840 -1.0899 41 1 -0.8237 4.0732 -5.5313 42 1 -0.7622 2.3588 -6.1254 43 1 -3.4470 5.0219 -6.1261 44 1 -2.3777 5.2343 -8.8908 45 1 -2.7366 1.0369 -5.0950 46 1 -3.7005 2.1472 -4.0299 47 1 2.2003 3.2756 -3.9061 48 1 1.0260 1.9983 -4.3526 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193970002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:54 Heat of formation + Delta-G solvation = -107.860079 kcal Electronic energy + Delta-G solvation = -29340.234676 eV Core-core repulsion = 25395.444351 eV Total energy + Delta-G solvation = -3944.790325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.12909 -40.94698 -39.12474 -37.64065 -36.54287 -35.86804 -34.20175 -33.01686 -32.23518 -30.23300 -28.71014 -27.61605 -26.98148 -26.76043 -23.95370 -23.00887 -22.89878 -21.64375 -19.99892 -19.86588 -19.18622 -18.27650 -17.81950 -17.35838 -17.01065 -16.60563 -16.28948 -16.02619 -15.79244 -15.52692 -15.35176 -14.99011 -14.74244 -14.58657 -14.24259 -14.08170 -13.93355 -13.83475 -13.77236 -13.58889 -13.45295 -13.25922 -12.87390 -12.79465 -12.68139 -12.56017 -12.49739 -12.24502 -12.13395 -12.00807 -11.90767 -11.78093 -11.76384 -11.25211 -10.86458 -10.69409 -10.62491 -10.16152 -9.62924 -9.55590 -8.26555 -6.40798 1.46828 1.51455 1.53775 1.57974 1.60932 1.93435 2.06208 2.42070 2.95584 3.26109 3.33779 3.41117 3.70764 3.72936 3.84909 4.01317 4.11414 4.16531 4.30967 4.33523 4.45278 4.47661 4.52311 4.56348 4.57942 4.63296 4.64527 4.74515 4.77576 4.85639 4.88390 4.94221 4.98916 5.00852 5.02642 5.09777 5.17882 5.22285 5.26774 5.39127 5.41626 5.72454 5.72604 5.91780 6.15378 6.63384 6.92117 7.15057 7.17093 7.32592 7.32840 8.78848 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.023403 B = 0.003095 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.153383 B = 9044.154694 C = 9276.411406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.157 3.843 4 C -0.135 4.135 5 C -0.143 4.143 6 N -0.598 5.598 7 C 0.121 3.879 8 C -0.110 4.110 9 H 0.146 0.854 10 C 0.534 3.466 11 O -0.578 6.578 12 N -0.635 5.635 13 C 0.098 3.902 14 C 0.222 3.778 15 O -0.576 6.576 16 C -0.561 4.561 17 H 0.067 0.933 18 C 0.042 3.958 19 N -0.903 5.903 20 Si 0.958 3.042 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.107 3.893 25 C -0.140 4.140 26 C 0.513 3.487 27 O -0.571 6.571 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.384 0.616 44 H 0.274 0.726 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.144 0.856 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.604 0.839 13.019 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.056 3.944 4 C -0.173 4.173 5 C -0.200 4.200 6 N -0.330 5.330 7 C -0.002 4.002 8 C -0.131 4.131 9 H 0.163 0.837 10 C 0.325 3.675 11 O -0.459 6.459 12 N -0.367 5.367 13 C -0.025 4.025 14 C 0.181 3.819 15 O -0.384 6.384 16 C -0.599 4.599 17 H 0.086 0.914 18 C -0.161 4.161 19 N -0.541 5.541 20 Si 0.783 3.217 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.196 1.196 24 C -0.016 4.016 25 C -0.180 4.180 26 C 0.301 3.699 27 O -0.451 6.451 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.235 0.765 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.161 0.839 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.799 -0.081 14.188 17.830 hybrid contribution -0.647 -0.158 -1.778 1.899 sum 10.151 -0.239 12.410 16.035 Atomic orbital electron populations 1.21726 0.95689 1.00998 1.02174 1.21890 0.95945 0.96889 1.02533 1.21251 0.95286 0.92817 0.85093 1.21889 0.93940 0.98937 1.02583 1.21690 1.01081 0.95265 1.01989 1.48322 1.49829 1.28954 1.05923 1.22173 0.94987 0.88316 0.94675 1.22255 0.90143 1.02587 0.98156 0.83667 1.20438 0.86714 0.79773 0.80621 1.90611 1.66844 1.49754 1.38720 1.49749 1.23615 1.55500 1.07861 1.23782 1.01537 0.98795 0.78398 1.19661 0.88784 0.82421 0.91032 1.86072 1.81570 1.27031 1.43757 1.21534 1.46156 1.00396 0.91824 0.91446 1.25615 0.93581 0.94991 1.01922 1.69792 1.39671 1.11281 1.33314 0.85574 0.78563 0.78539 0.78976 1.20312 1.20710 1.19648 1.23257 0.86207 0.98417 0.93689 1.22380 0.98625 0.99562 0.97462 1.21012 0.79380 0.84167 0.85317 1.90649 1.40232 1.29687 1.84540 0.93596 0.91920 0.93836 0.93649 0.89031 0.87257 0.89351 0.93202 0.91216 0.92355 0.93461 0.89520 0.86423 0.91014 0.89931 0.76546 0.91617 0.88904 0.92714 0.83870 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.80 71.98 0.71 -3.30 16 2 C -0.13 -3.22 5.36 30.59 0.16 -3.05 16 3 C 0.16 3.25 2.25 44.99 0.10 3.35 16 4 C -0.14 -2.52 5.36 30.59 0.16 -2.36 16 5 C -0.14 -2.14 9.80 71.98 0.71 -1.43 16 6 N -0.60 -14.22 1.74 -794.03 -1.38 -15.60 16 7 C 0.12 2.50 6.63 86.83 0.58 3.08 16 8 C -0.11 -2.75 3.36 -10.43 -0.04 -2.78 16 9 H 0.15 2.95 8.14 -2.39 -0.02 2.93 16 10 C 0.53 19.03 7.35 87.65 0.64 19.67 16 11 O -0.58 -23.48 14.59 -3.03 -0.04 -23.52 16 12 N -0.63 -24.65 3.63 -859.28 -3.12 -27.77 16 13 C 0.10 3.88 7.45 83.09 0.62 4.49 16 14 C 0.22 10.06 1.41 -11.29 -0.02 10.04 16 15 O -0.58 -27.57 13.56 -148.98 -2.02 -29.59 16 16 C -0.56 -27.00 8.65 25.60 0.22 -26.78 16 17 H 0.07 3.22 7.83 -2.91 -0.02 3.20 16 18 C 0.04 1.96 5.21 84.66 0.44 2.40 16 19 N -0.90 -42.99 11.81 21.45 0.25 -42.74 16 20 Si 0.96 38.30 29.55 68.60 2.03 40.33 16 21 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 24 C 0.11 4.52 8.04 83.18 0.67 5.19 16 25 C -0.14 -3.53 6.42 30.64 0.20 -3.33 16 26 C 0.51 15.04 7.37 87.90 0.65 15.69 16 27 O -0.57 -20.77 15.02 -3.02 -0.05 -20.81 16 28 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.47 5.96 -2.39 -0.01 1.45 16 31 H 0.04 1.38 6.65 -2.39 -0.02 1.37 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 1.79 8.07 -2.38 -0.02 1.77 16 34 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.05 1.25 6.62 -2.39 -0.02 1.24 16 36 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.05 0.77 7.75 -2.38 -0.02 0.76 16 39 H 0.09 2.03 7.02 -2.39 -0.02 2.01 16 40 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.08 3.25 8.10 -2.39 -0.02 3.23 16 43 H 0.38 18.43 7.09 -74.06 -0.53 17.91 16 44 H 0.27 12.46 8.31 -92.71 -0.77 11.69 16 45 H 0.09 3.70 8.10 -2.39 -0.02 3.68 16 46 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 47 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 48 H 0.09 2.57 7.48 -2.39 -0.02 2.55 16 Total: -1.00 -61.25 384.21 1.91 -59.34 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: 0.43 Total: 39.49 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 5.80 Total: 20.88 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -4.24 Total: -86.10 kcal Atomic # 8 Polarization: -71.82 SS G_CDS: -2.11 Total: -73.93 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -61.25 1.91 -59.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193970002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.523 kcal (2) G-P(sol) polarization free energy of solvation -61.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds