Wall clock time and date at job start Fri Apr 10 2020 18:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46984 * 2 1 4 4 C 1.53000 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46809 * 305.00578 * 4 3 2 6 6 C 1.52998 * 109.47218 * 185.00001 * 4 3 2 7 7 N 1.46498 * 109.46650 * 64.99918 * 4 3 2 8 8 C 1.46768 * 124.34879 * 239.99703 * 7 4 3 9 9 C 1.54480 * 105.55098 * 197.08340 * 8 7 4 10 10 H 1.08995 * 110.97082 * 92.66028 * 9 8 7 11 11 C 1.50700 * 110.97066 * 216.42441 * 9 8 7 12 12 O 1.21287 * 119.99902 * 359.97438 * 11 9 8 13 13 N 1.34769 * 120.00155 * 180.02562 * 11 9 8 14 14 C 1.47070 * 136.05934 * 359.62785 * 13 11 9 15 15 C 1.53751 * 87.89028 * 152.96447 * 14 13 11 16 16 O 1.42900 * 114.39519 * 272.67483 * 15 14 13 17 17 C 1.50700 * 114.26463 * 139.79168 * 15 14 13 18 18 H 1.08002 * 120.00075 * 266.47235 * 17 15 14 19 19 C 1.37885 * 119.99774 * 86.47926 * 17 15 14 20 20 N 1.31514 * 120.00013 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 119.99832 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46891 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46994 * 119.99617 * 21 19 17 24 24 H 1.48497 * 109.46994 * 239.99852 * 21 19 17 25 25 C 1.47068 * 136.05915 * 179.97438 * 13 11 9 26 26 C 1.54631 * 101.76472 * 334.54015 * 9 8 7 27 27 C 1.34621 * 124.47196 * 60.02945 * 7 4 3 28 28 O 1.21280 * 124.90469 * 359.57880 * 27 7 4 29 29 H 1.08995 * 109.47621 * 59.99789 * 1 2 3 30 30 H 1.09001 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46731 * 299.99115 * 1 2 3 32 32 H 1.08997 * 109.47103 * 240.00538 * 2 1 3 33 33 H 1.08995 * 109.47621 * 120.00211 * 2 1 3 34 34 H 1.08998 * 109.47278 * 60.00419 * 3 2 1 35 35 H 1.09005 * 109.46973 * 300.00597 * 3 2 1 36 36 H 1.08999 * 109.46990 * 180.02562 * 6 4 3 37 37 H 1.08997 * 109.47239 * 300.00211 * 6 4 3 38 38 H 1.08999 * 109.47181 * 59.99998 * 6 4 3 39 39 H 1.09002 * 110.24468 * 78.03845 * 8 7 4 40 40 H 1.09002 * 110.24463 * 316.12602 * 8 7 4 41 41 H 1.09005 * 113.46714 * 267.70250 * 14 13 11 42 42 H 1.09007 * 113.46492 * 38.13296 * 14 13 11 43 43 H 0.96693 * 114.00465 * 273.58909 * 16 15 14 44 44 H 0.96999 * 119.99904 * 179.97438 * 20 19 17 45 45 H 1.09001 * 113.46689 * 321.86734 * 25 13 11 46 46 H 1.08999 * 113.46568 * 92.30346 * 25 13 11 47 47 H 1.09000 * 110.48694 * 143.47575 * 26 9 8 48 48 H 1.08994 * 110.49106 * 266.12244 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0799 2.8796 0.1251 7 7 4.0577 0.8591 -1.2528 8 6 4.9050 -0.3365 -1.3344 9 6 5.5135 -0.3168 -2.7542 10 1 6.4811 0.1849 -2.7570 11 6 5.6303 -1.7125 -3.3103 12 8 5.2660 -2.6614 -2.6487 13 7 6.1407 -1.9064 -4.5425 14 6 6.6673 -1.0516 -5.6172 15 6 7.5260 -2.2447 -6.0679 16 8 8.7919 -2.3420 -5.4121 17 6 7.6150 -2.4140 -7.5627 18 1 6.9261 -3.0703 -8.0738 19 6 8.5759 -1.7311 -8.2779 20 7 9.4145 -0.9317 -7.6556 21 14 8.6867 -1.9415 -10.1307 22 1 7.6376 -2.8895 -10.5848 23 1 8.4858 -0.6267 -10.7910 24 1 10.0249 -2.4762 -10.4890 25 6 6.4104 -3.0654 -5.4067 26 6 4.4622 0.5043 -3.5363 27 6 3.7884 1.3489 -2.4774 28 8 3.1053 2.3262 -2.6992 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 5.1699 2.8797 0.1242 37 1 3.7162 3.4692 -0.7164 38 1 3.7170 3.3138 1.0567 39 1 4.3041 -1.2350 -1.1940 40 1 5.6951 -0.2908 -0.5848 41 1 5.9133 -0.7588 -6.3478 42 1 7.2522 -0.2070 -5.2527 43 1 9.4927 -1.8239 -5.8309 44 1 10.0908 -0.4516 -8.1586 45 1 6.7763 -3.9364 -4.8630 46 1 5.5886 -3.3040 -6.0818 47 1 4.9480 1.1383 -4.2780 48 1 3.7393 -0.1573 -4.0135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193982709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:08 Heat of formation + Delta-G solvation = -109.416888 kcal Electronic energy + Delta-G solvation = -28640.173956 eV Core-core repulsion = 24695.316123 eV Total energy + Delta-G solvation = -3944.857833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.05536 -40.99262 -39.20191 -37.64984 -36.65415 -35.87534 -34.09787 -33.84732 -31.49926 -30.04405 -28.77632 -27.61564 -27.23347 -26.79237 -24.09458 -23.49078 -22.35064 -21.60938 -19.97410 -19.92347 -19.20770 -18.36141 -17.79787 -17.29217 -17.11286 -16.67017 -16.36158 -16.02288 -15.87683 -15.55064 -15.18922 -15.03381 -14.88836 -14.59604 -14.51523 -14.16215 -14.05908 -13.81775 -13.61868 -13.54957 -13.38915 -13.02466 -12.91946 -12.79800 -12.76063 -12.64839 -12.48323 -12.42992 -12.22006 -12.11109 -11.92473 -11.64819 -11.60572 -11.38800 -10.99427 -10.71316 -10.59831 -10.19631 -9.71383 -9.58057 -8.26428 -6.42296 1.46042 1.46516 1.51831 1.55262 1.61463 1.76260 2.06217 2.41854 2.95820 3.10239 3.29699 3.51016 3.70726 3.77564 3.83057 4.01949 4.05067 4.07979 4.18215 4.30613 4.37534 4.46666 4.48417 4.53030 4.57345 4.64430 4.69110 4.73015 4.78552 4.81797 4.84497 4.89652 4.95694 4.95848 4.98329 4.99668 5.20921 5.24611 5.27551 5.29939 5.40069 5.67219 5.75339 5.93343 6.05186 6.63678 6.86316 7.06831 7.11085 7.31754 7.51680 8.79577 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.002800 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.157385 B = 9996.077337 C =10267.082094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.130 4.130 4 C 0.149 3.851 5 H 0.114 0.886 6 C -0.162 4.162 7 N -0.605 5.605 8 C 0.124 3.876 9 C -0.106 4.106 10 H 0.127 0.873 11 C 0.545 3.455 12 O -0.585 6.585 13 N -0.630 5.630 14 C 0.087 3.913 15 C 0.217 3.783 16 O -0.585 6.585 17 C -0.550 4.550 18 H 0.073 0.927 19 C 0.033 3.967 20 N -0.916 5.916 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.283 1.283 25 C 0.107 3.893 26 C -0.138 4.138 27 C 0.522 3.478 28 O -0.561 6.561 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.389 0.611 44 H 0.276 0.724 45 H 0.055 0.945 46 H 0.103 0.897 47 H 0.116 0.884 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 5.717 13.378 17.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.169 4.169 4 C 0.048 3.952 5 H 0.132 0.868 6 C -0.220 4.220 7 N -0.338 5.338 8 C 0.001 3.999 9 C -0.128 4.128 10 H 0.145 0.855 11 C 0.336 3.664 12 O -0.467 6.467 13 N -0.362 5.362 14 C -0.036 4.036 15 C 0.176 3.824 16 O -0.398 6.398 17 C -0.588 4.588 18 H 0.091 0.909 19 C -0.167 4.167 20 N -0.557 5.557 21 Si 0.792 3.208 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.209 1.209 25 C -0.015 4.015 26 C -0.179 4.179 27 C 0.310 3.690 28 O -0.440 6.440 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.245 0.755 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.120 0.880 47 H 0.134 0.866 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.504 5.533 14.284 18.574 hybrid contribution 0.643 0.182 -1.616 1.749 sum -9.862 5.715 12.668 17.041 Atomic orbital electron populations 1.21741 0.95390 1.01784 1.01781 1.21479 0.96357 0.96403 1.01599 1.21996 0.94341 0.97457 1.03062 1.21285 0.94137 0.95072 0.84725 0.86805 1.22127 1.01473 0.95427 1.02935 1.48534 1.50639 1.28346 1.06301 1.21986 0.94778 0.87807 0.95320 1.22045 1.01943 0.92456 0.96338 0.85499 1.20034 0.75718 0.91017 0.79669 1.90639 1.51984 1.44727 1.59380 1.49688 1.60032 1.13084 1.13436 1.24067 0.96434 0.97134 0.85980 1.19849 0.81471 0.91086 0.90000 1.86024 1.21482 1.74342 1.57920 1.21692 1.17497 1.27959 0.91620 0.90857 1.25716 0.94339 0.93337 1.03323 1.69316 1.19555 1.28880 1.37930 0.85366 0.77942 0.78071 0.79397 1.19161 1.20375 1.20923 1.23325 0.97203 0.90648 0.90341 1.22272 0.98407 0.99046 0.98126 1.20842 0.79683 0.83581 0.84897 1.90666 1.41057 1.27977 1.84299 0.93985 0.92519 0.91428 0.94267 0.90714 0.88849 0.93073 0.92089 0.93700 0.89235 0.90055 0.87496 0.88744 0.91522 0.75483 0.91411 0.92670 0.87956 0.86597 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.81 16 2 C -0.12 -2.21 5.82 30.60 0.18 -2.03 16 3 C -0.13 -2.39 4.64 30.60 0.14 -2.25 16 4 C 0.15 2.64 2.87 44.99 0.13 2.77 16 5 H 0.11 1.48 8.07 -2.39 -0.02 1.46 16 6 C -0.16 -2.80 9.20 71.98 0.66 -2.13 16 7 N -0.60 -13.45 2.29 -793.73 -1.81 -15.27 16 8 C 0.12 2.75 6.66 86.83 0.58 3.33 16 9 C -0.11 -2.78 3.37 -10.48 -0.04 -2.81 16 10 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 11 C 0.55 19.08 7.31 87.66 0.64 19.72 16 12 O -0.59 -23.61 16.28 -3.05 -0.05 -23.66 16 13 N -0.63 -23.75 3.69 -858.29 -3.16 -26.92 16 14 C 0.09 3.34 7.86 83.26 0.65 3.99 16 15 C 0.22 9.78 1.58 -11.13 -0.02 9.76 16 16 O -0.58 -28.91 13.55 -148.98 -2.02 -30.93 16 17 C -0.55 -26.06 8.70 25.60 0.22 -25.84 16 18 H 0.07 3.39 7.81 -2.91 -0.02 3.36 16 19 C 0.03 1.57 5.39 84.66 0.46 2.03 16 20 N -0.92 -44.36 11.01 21.45 0.24 -44.12 16 21 Si 0.97 38.13 29.54 68.60 2.03 40.16 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 25 C 0.11 4.36 8.02 83.17 0.67 5.03 16 26 C -0.14 -3.56 6.41 30.59 0.20 -3.37 16 27 C 0.52 14.35 7.40 87.87 0.65 15.00 16 28 O -0.56 -18.79 15.10 -3.03 -0.05 -18.84 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.04 0.90 7.75 -2.39 -0.02 0.88 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.26 6.64 -2.38 -0.02 1.25 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.04 1.04 6.81 -2.39 -0.02 1.02 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 2.04 6.96 -2.39 -0.02 2.03 16 40 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.09 3.41 8.10 -2.38 -0.02 3.39 16 42 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 43 H 0.39 19.65 6.32 -74.06 -0.47 19.18 16 44 H 0.28 12.68 8.31 -92.71 -0.77 11.91 16 45 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.10 3.77 8.10 -2.39 -0.02 3.75 16 47 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 48 H 0.10 2.72 7.89 -2.39 -0.02 2.70 16 Total: -1.00 -59.37 388.38 1.49 -57.88 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: 0.48 Total: 40.30 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 5.84 Total: 21.39 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -4.74 Total: -86.31 kcal Atomic # 8 Polarization: -71.31 SS G_CDS: -2.11 Total: -73.42 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -59.37 1.49 -57.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193982709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.537 kcal (2) G-P(sol) polarization free energy of solvation -59.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds