Wall clock time and date at job start Fri Apr 10 2020 18:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50692 * 120.00159 * 2 1 4 4 C 1.50707 * 119.99984 * 180.02562 * 2 1 3 5 5 H 1.08999 * 110.41724 * 229.83330 * 4 2 1 6 6 O 1.44783 * 110.48501 * 352.28267 * 4 2 1 7 7 C 1.44431 * 105.29279 * 159.32450 * 6 4 2 8 8 C 1.54477 * 104.80481 * 319.45749 * 7 6 4 9 9 C 1.54477 * 110.37274 * 107.51929 * 4 2 1 10 10 H 1.09003 * 110.50680 * 98.40986 * 9 4 2 11 11 C 1.52997 * 110.51439 * 335.83634 * 9 4 2 12 12 N 1.46496 * 109.47203 * 181.99236 * 11 9 4 13 13 C 1.34782 * 120.00050 * 179.97438 * 12 11 9 14 14 O 1.21354 * 119.99881 * 0.02562 * 13 12 11 15 15 C 1.49448 * 119.99972 * 180.02562 * 13 12 11 16 16 O 1.21345 * 120.00219 * 0.02562 * 15 13 12 17 17 N 1.34773 * 119.99601 * 180.02562 * 15 13 12 18 18 C 1.46498 * 119.99847 * 179.72965 * 17 15 13 19 19 C 1.53001 * 109.47697 * 180.27604 * 18 17 15 20 20 C 1.52988 * 109.47672 * 179.97438 * 19 18 17 21 21 C 1.50703 * 109.47554 * 179.97438 * 20 19 18 22 22 H 1.08004 * 119.99601 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00453 * 180.02562 * 21 20 19 24 24 N 1.31520 * 120.00016 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00192 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47215 * 89.99768 * 25 23 21 27 27 H 1.48495 * 109.47149 * 209.99841 * 25 23 21 28 28 H 1.48496 * 109.47097 * 329.99604 * 25 23 21 29 29 H 1.08003 * 119.99989 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00386 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47434 * 272.03956 * 3 2 1 32 32 H 1.09004 * 109.47175 * 32.03400 * 3 2 1 33 33 H 1.09001 * 109.47406 * 152.03918 * 3 2 1 34 34 H 1.08994 * 110.37254 * 200.62293 * 7 6 4 35 35 H 1.09009 * 110.36693 * 78.28619 * 7 6 4 36 36 H 1.08994 * 110.50783 * 265.33238 * 8 7 6 37 37 H 1.09000 * 110.51210 * 142.61789 * 8 7 6 38 38 H 1.09004 * 109.46941 * 61.99167 * 11 9 4 39 39 H 1.08997 * 109.46833 * 301.99723 * 11 9 4 40 40 H 0.97001 * 120.00194 * 0.02562 * 12 11 9 41 41 H 0.96999 * 120.00297 * 0.02562 * 17 15 13 42 42 H 1.09007 * 109.47015 * 300.27029 * 18 17 15 43 43 H 1.08998 * 109.47346 * 60.27209 * 18 17 15 44 44 H 1.09007 * 109.46779 * 300.00479 * 19 18 17 45 45 H 1.09007 * 109.46830 * 59.99521 * 19 18 17 46 46 H 1.09000 * 109.47617 * 299.99863 * 20 19 18 47 47 H 1.08998 * 109.47080 * 59.99783 * 20 19 18 48 48 H 0.96996 * 120.00129 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0006 5 1 2.8242 -1.3054 0.7800 6 8 1.1529 -2.4160 0.1810 7 6 1.8581 -3.5725 -0.3202 8 6 2.5732 -3.0763 -1.5964 9 6 2.7099 -1.5523 -1.3817 10 1 3.7602 -1.2610 -1.3693 11 6 1.9557 -0.7876 -2.4712 12 7 2.5575 -1.0753 -3.7755 13 6 2.0542 -0.5082 -4.8898 14 8 1.1027 0.2411 -4.8126 15 6 2.6678 -0.8022 -6.2204 16 8 3.6189 -1.5518 -6.2977 17 7 2.1648 -0.2347 -7.3345 18 6 2.7699 -0.5182 -8.6382 19 6 2.0193 0.2510 -9.7272 20 6 2.6517 -0.0446 -11.0885 21 6 1.9120 0.7126 -12.1612 22 1 1.0747 1.3421 -11.8981 23 6 2.3039 0.6018 -13.4784 24 7 3.3238 -0.1644 -13.7988 25 14 1.3874 1.5409 -14.8078 26 1 2.0134 2.8746 -14.9928 27 1 1.4516 0.7828 -16.0831 28 1 -0.0315 1.7116 -14.4045 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 2.2135 1.6380 -1.0270 32 1 1.4906 2.0553 0.5451 33 1 3.0312 1.1658 0.4818 34 1 1.1553 -4.3690 -0.5645 35 1 2.5867 -3.9196 0.4125 36 1 1.9682 -3.2849 -2.4787 37 1 3.5560 -3.5387 -1.6878 38 1 2.0152 0.2824 -2.2717 39 1 0.9110 -1.0986 -2.4765 40 1 3.3178 -1.6746 -3.8373 41 1 1.4048 0.3648 -7.2728 42 1 3.8149 -0.2079 -8.6289 43 1 2.7102 -1.5873 -8.8418 44 1 0.9744 -0.0592 -9.7364 45 1 2.0791 1.3202 -9.5236 46 1 3.6965 0.2660 -11.0790 47 1 2.5923 -1.1137 -11.2923 48 1 3.5998 -0.2420 -14.7254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286643122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:22 Heat of formation + Delta-G solvation = -115.051930 kcal Electronic energy + Delta-G solvation = -26862.937914 eV Core-core repulsion = 22917.835727 eV Total energy + Delta-G solvation = -3945.102187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.91831 -40.21493 -38.47197 -36.02243 -35.63229 -35.16453 -33.35886 -32.38242 -31.25572 -29.47535 -27.66448 -27.48848 -26.51782 -24.21577 -23.35580 -22.45730 -21.13270 -20.79054 -20.17536 -19.00812 -18.21101 -17.34122 -16.71269 -16.43035 -16.35083 -16.12804 -15.80180 -15.43048 -15.09393 -14.93591 -14.46247 -14.41959 -14.28108 -13.80918 -13.65916 -13.51573 -13.24570 -13.04757 -12.51270 -12.32011 -12.13670 -11.90647 -11.81837 -11.78778 -11.66298 -11.58763 -11.53872 -11.06739 -10.92071 -10.77162 -10.61254 -10.36190 -9.91320 -9.79723 -9.50193 -9.39651 -9.35362 -9.14149 -8.99587 -8.38783 -6.03554 -4.06555 1.40912 1.82976 2.30937 3.21528 3.30558 3.31141 3.36959 3.40123 3.62654 3.92148 4.07195 4.29113 4.43158 4.51455 4.53478 4.63582 4.69917 4.82674 4.85773 5.02591 5.11497 5.16535 5.23799 5.29395 5.32410 5.38825 5.46078 5.56755 5.58004 5.65488 5.67727 5.70967 5.96117 6.06642 6.13928 6.25473 6.27353 6.52797 6.57259 6.67717 6.89492 6.94075 7.38714 7.60664 7.70915 7.72217 7.94737 8.03501 8.35985 8.99913 9.57825 11.07696 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.027796 B = 0.001789 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.107875 B =15646.790788 C =16186.438633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.144 4.144 3 C -0.117 4.117 4 C 0.123 3.877 5 H 0.083 0.917 6 O -0.367 6.367 7 C 0.046 3.954 8 C -0.157 4.157 9 C -0.127 4.127 10 H 0.095 0.905 11 C 0.127 3.873 12 N -0.705 5.705 13 C 0.508 3.492 14 O -0.518 6.518 15 C 0.500 3.500 16 O -0.527 6.527 17 N -0.691 5.691 18 C 0.114 3.886 19 C -0.123 4.123 20 C 0.024 3.976 21 C -0.522 4.522 22 H 0.056 0.944 23 C 0.056 3.944 24 N -0.894 5.894 25 Si 0.894 3.106 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.412 0.588 41 H 0.411 0.589 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 -3.554 32.006 32.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C -0.174 4.174 4 C 0.065 3.935 5 H 0.100 0.900 6 O -0.286 6.286 7 C -0.031 4.031 8 C -0.195 4.195 9 C -0.146 4.146 10 H 0.114 0.886 11 C 0.004 3.996 12 N -0.359 5.359 13 C 0.288 3.712 14 O -0.394 6.394 15 C 0.280 3.720 16 O -0.405 6.405 17 N -0.343 5.343 18 C -0.008 4.008 19 C -0.161 4.161 20 C -0.013 4.013 21 C -0.561 4.561 22 H 0.074 0.926 23 C -0.145 4.145 24 N -0.533 5.533 25 Si 0.722 3.278 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.127 0.873 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.248 0.752 41 H 0.247 0.753 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.061 -3.601 31.924 32.144 hybrid contribution -0.193 0.396 -0.920 1.020 sum -1.254 -3.205 31.004 31.194 Atomic orbital electron populations 1.23796 0.95342 1.02504 0.98275 1.21433 0.95774 0.93905 1.03293 1.20864 1.00088 0.93862 1.02556 1.21802 0.90805 0.86067 0.94868 0.89955 1.89199 1.38968 1.16574 1.83810 1.23402 0.96248 0.89436 0.93989 1.23121 1.02311 0.94283 0.99786 1.22757 1.01044 0.95755 0.95021 0.88628 1.21619 0.97540 1.00485 0.79978 1.45783 1.35389 1.48622 1.06086 1.20340 0.83941 0.81130 0.85770 1.90769 1.26584 1.35073 1.86935 1.20010 0.84431 0.82103 0.85487 1.90753 1.27058 1.35819 1.86827 1.46073 1.34485 1.46929 1.06767 1.21848 0.97971 1.01175 0.79848 1.21930 0.99401 0.98874 0.95876 1.19031 0.96176 0.97404 0.88724 1.21199 1.15343 1.27743 0.91787 0.92565 1.25031 0.95173 0.95462 0.98836 1.69963 1.26465 1.38572 1.18302 0.86564 0.80202 0.79835 0.81228 1.20652 1.21212 1.19865 0.87300 0.88227 0.91048 0.91293 0.91806 0.88749 0.91993 0.89874 0.89764 0.90091 0.90455 0.75211 0.75294 0.91093 0.91085 0.92411 0.92426 0.96202 0.96192 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 13.53 29.02 0.39 -0.86 16 2 C -0.14 -1.01 3.61 -101.07 -0.37 -1.37 16 3 C -0.12 -0.66 9.74 36.00 0.35 -0.31 16 4 C 0.12 0.81 3.55 -27.10 -0.10 0.71 16 5 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 6 O -0.37 -2.97 9.86 -35.23 -0.35 -3.32 16 7 C 0.05 0.26 7.63 37.93 0.29 0.55 16 8 C -0.16 -0.86 6.29 -25.16 -0.16 -1.02 16 9 C -0.13 -0.76 3.11 -89.05 -0.28 -1.04 16 10 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 11 C 0.13 1.06 3.93 -4.05 -0.02 1.05 16 12 N -0.70 -6.90 5.21 -60.73 -0.32 -7.22 16 13 C 0.51 6.60 7.89 -11.58 -0.09 6.51 16 14 O -0.52 -7.77 16.48 5.49 0.09 -7.68 16 15 C 0.50 7.38 7.89 -11.59 -0.09 7.29 16 16 O -0.53 -8.77 16.48 5.50 0.09 -8.68 16 17 N -0.69 -10.31 5.55 -60.73 -0.34 -10.65 16 18 C 0.11 1.94 5.67 -4.04 -0.02 1.91 16 19 C -0.12 -2.38 5.27 -26.74 -0.14 -2.52 16 20 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 21 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 22 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 25 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 29 H 0.11 0.93 6.92 -52.48 -0.36 0.57 16 30 H 0.10 0.67 8.05 -52.49 -0.42 0.25 16 31 H 0.07 0.43 6.57 -51.93 -0.34 0.09 16 32 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.06 0.29 8.11 -51.93 -0.42 -0.13 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.28 8.14 -51.92 -0.42 -0.15 16 36 H 0.08 0.55 7.58 -51.93 -0.39 0.15 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.71 5.38 -51.93 -0.28 0.43 16 39 H 0.08 0.77 7.99 -51.93 -0.42 0.36 16 40 H 0.41 3.54 7.68 -40.82 -0.31 3.23 16 41 H 0.41 5.63 7.94 -40.82 -0.32 5.31 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 45 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -32.52 395.29 -7.81 -40.33 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.88 Total: 2.65 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.78 Total: -1.95 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.08 Total: -43.75 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.17 Total: -19.69 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.52 -7.81 -40.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286643122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.725 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds