Wall clock time and date at job start Fri Apr 10 2020 18:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47484 * 2 1 4 4 C 1.53006 * 109.47150 * 239.99459 * 2 1 3 5 5 O 1.45209 * 109.47093 * 119.99971 * 2 1 3 6 6 C 1.34639 * 117.00192 * 60.00040 * 5 2 1 7 7 O 1.21510 * 119.99616 * 359.97438 * 6 5 2 8 8 N 1.34768 * 120.00120 * 180.02562 * 6 5 2 9 9 C 1.44351 * 116.42456 * 359.97438 * 8 6 5 10 10 C 1.51876 * 113.48083 * 187.52878 * 9 8 6 11 11 C 1.52908 * 111.49695 * 321.32383 * 10 9 8 12 12 H 1.09005 * 112.47686 * 293.13886 * 11 10 9 13 13 C 1.55406 * 106.57385 * 169.08975 * 11 10 9 14 14 N 1.47380 * 106.74127 * 270.28528 * 13 11 10 15 15 C 1.34770 * 125.74665 * 179.10007 * 14 13 11 16 16 O 1.21691 * 119.99952 * 359.97438 * 15 14 13 17 17 C 1.46378 * 120.00308 * 179.97438 * 15 14 13 18 18 H 1.08001 * 119.99829 * 359.97438 * 17 15 14 19 19 C 1.40053 * 120.00208 * 180.02562 * 17 15 14 20 20 N 1.30671 * 119.99830 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00060 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47167 * 89.99965 * 21 19 17 23 23 H 1.48499 * 109.46871 * 209.99877 * 21 19 17 24 24 H 1.48498 * 109.47087 * 329.99856 * 21 19 17 25 25 C 1.47936 * 108.51601 * 359.06290 * 14 13 11 26 26 C 1.54105 * 110.27182 * 59.77801 * 11 10 9 27 27 H 1.08995 * 109.18987 * 188.41995 * 26 11 10 28 28 C 1.43980 * 116.42883 * 179.97438 * 8 6 5 29 29 H 1.08998 * 109.46968 * 300.00056 * 1 2 3 30 30 H 1.08992 * 109.47111 * 60.00181 * 1 2 3 31 31 H 1.09006 * 109.47110 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47557 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46674 * 299.99927 * 3 2 1 34 34 H 1.09000 * 109.47199 * 59.99240 * 3 2 1 35 35 H 1.08994 * 109.47083 * 300.00394 * 4 2 1 36 36 H 1.09001 * 109.46950 * 60.00108 * 4 2 1 37 37 H 1.08993 * 109.46985 * 180.02562 * 4 2 1 38 38 H 1.09001 * 108.77232 * 308.97189 * 9 8 6 39 39 H 1.09002 * 108.77770 * 67.26646 * 9 8 6 40 40 H 1.09000 * 109.76372 * 200.39123 * 10 9 8 41 41 H 1.08998 * 108.49807 * 81.41595 * 10 9 8 42 42 H 1.09005 * 110.01105 * 150.96327 * 13 11 10 43 43 H 1.09001 * 110.00788 * 29.60215 * 13 11 10 44 44 H 0.96997 * 120.00407 * 179.97438 * 20 19 17 45 45 H 1.09002 * 110.56797 * 94.13215 * 25 14 13 46 46 H 1.08996 * 110.56952 * 216.99521 * 25 14 13 47 47 H 1.09006 * 108.11010 * 61.05081 * 28 8 6 48 48 H 1.09001 * 107.94777 * 304.47717 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9724 1.3384 7 8 0.9509 -2.5095 0.5041 8 7 2.0672 -2.6654 2.4172 9 6 2.8963 -1.9519 3.3592 10 6 3.4736 -2.8378 4.4494 11 6 2.4615 -3.8854 4.9147 12 1 1.6079 -3.4414 5.4270 13 6 3.2420 -4.8903 5.8068 14 7 3.7505 -5.9457 4.9126 15 6 4.4967 -7.0035 5.2877 16 8 4.8059 -7.1463 6.4560 17 6 4.9352 -7.9806 4.2899 18 1 4.6604 -7.8541 3.2531 19 6 5.7102 -9.0801 4.6798 20 7 6.0422 -9.2334 5.9343 21 14 6.2691 -10.3273 3.4065 22 1 7.5829 -9.9134 2.8516 23 1 6.3997 -11.6617 4.0449 24 1 5.2692 -10.3984 2.3110 25 6 3.3033 -5.6492 3.5340 26 6 2.0431 -4.7844 3.7351 27 1 1.2167 -5.4230 4.0468 28 6 1.6349 -4.0360 2.5036 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2076 -2.1392 37 1 3.1300 -0.7218 -1.2490 38 1 3.7150 -1.4783 2.8174 39 1 2.2974 -1.1764 3.8367 40 1 3.7704 -2.2270 5.3020 41 1 4.3534 -3.3449 4.0534 42 1 2.5751 -5.3229 6.5527 43 1 4.0737 -4.3851 6.2980 44 1 6.5786 -9.9950 6.2045 45 1 4.0687 -5.0908 2.9949 46 1 3.0557 -6.5696 3.0054 47 1 2.0261 -4.5699 1.6375 48 1 0.5466 -4.0493 2.4437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328599725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:32 Heat of formation + Delta-G solvation = -111.921482 kcal Electronic energy + Delta-G solvation = -28859.435039 eV Core-core repulsion = 24914.468598 eV Total energy + Delta-G solvation = -3944.966441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.23539 -39.76026 -37.68290 -36.47704 -35.21460 -34.04470 -32.53375 -32.23830 -31.07740 -28.28441 -27.64713 -27.58855 -26.23977 -25.42428 -23.25455 -22.54926 -21.85093 -19.83979 -19.26263 -18.25064 -17.99289 -16.83992 -16.67910 -16.59369 -15.73704 -15.35250 -15.29455 -14.91531 -14.50665 -14.28196 -14.02089 -13.92755 -13.65018 -13.32373 -12.98253 -12.93661 -12.74571 -12.42150 -12.32576 -12.20970 -12.11260 -11.99110 -11.85517 -11.61453 -11.45443 -11.29944 -11.13855 -10.99732 -10.87411 -10.65519 -10.52000 -10.40084 -10.37824 -10.25933 -10.15674 -10.05646 -8.87752 -8.67538 -7.67429 -7.24630 -6.22653 -4.67279 2.08551 2.74001 3.12654 3.19666 3.23010 3.73174 4.05725 4.46196 4.48691 4.51997 4.53169 4.58033 4.67468 4.72164 4.80465 4.95139 5.11057 5.21575 5.21884 5.29834 5.37834 5.44381 5.48757 5.55347 5.63065 5.63498 5.67176 5.73340 5.74203 5.77143 5.87417 5.88558 6.01442 6.06912 6.10212 6.23845 6.28922 6.33798 6.45933 6.46963 6.58510 6.67973 7.22644 7.29762 7.41254 8.07160 8.26782 8.37694 8.99330 9.44683 10.54541 10.73404 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.002843 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.568829 B = 9846.458245 C =10582.875980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.361 6.361 6 C 0.642 3.358 7 O -0.568 6.568 8 N -0.574 5.574 9 C 0.121 3.879 10 C -0.124 4.124 11 C -0.092 4.092 12 H 0.091 0.909 13 C 0.121 3.879 14 N -0.646 5.646 15 C 0.572 3.428 16 O -0.576 6.576 17 C -0.539 4.539 18 H 0.069 0.931 19 C 0.087 3.913 20 N -0.768 5.768 21 Si 0.908 3.092 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.264 1.264 25 C 0.128 3.872 26 C -0.110 4.110 27 H 0.092 0.908 28 C 0.151 3.849 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.269 0.731 45 H 0.049 0.951 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 19.366 -11.091 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.276 6.276 6 C 0.397 3.603 7 O -0.457 6.457 8 N -0.314 5.314 9 C -0.001 4.001 10 C -0.162 4.162 11 C -0.112 4.112 12 H 0.109 0.891 13 C -0.003 4.003 14 N -0.387 5.387 15 C 0.378 3.622 16 O -0.458 6.458 17 C -0.575 4.575 18 H 0.088 0.912 19 C -0.133 4.133 20 N -0.397 5.397 21 Si 0.732 3.268 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.188 1.188 25 C 0.003 3.997 26 C -0.130 4.130 27 H 0.111 0.889 28 C 0.029 3.971 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.073 18.939 -10.497 23.477 hybrid contribution 0.274 -0.548 -0.696 0.927 sum -8.799 18.392 -11.193 23.258 Atomic orbital electron populations 1.22507 0.94084 1.05084 1.02302 1.22047 0.94315 0.91519 0.82343 1.21849 1.02282 0.92608 1.02989 1.22514 1.01611 1.03574 0.96372 1.86328 1.71412 1.23712 1.46127 1.18114 0.79284 0.80624 0.82315 1.90885 1.41265 1.70437 1.43159 1.45598 1.52511 1.11647 1.21644 1.20760 0.94303 0.94103 0.90964 1.21619 0.99330 0.97486 0.97725 1.22109 0.97801 0.95238 0.96015 0.89109 1.21866 0.96577 0.88857 0.93013 1.48905 1.57656 1.26255 1.05837 1.18038 0.76582 0.78595 0.88949 1.90616 1.59513 1.75738 1.19967 1.20888 1.34626 1.07647 0.94382 0.91247 1.25732 0.94323 0.97832 0.95416 1.70017 1.27332 1.26143 1.16185 0.86366 0.79575 0.79704 0.81121 1.19704 1.20411 1.18824 1.21937 0.92733 0.97935 0.87086 1.21666 1.00142 0.97242 0.93906 0.88925 1.19907 0.99477 0.78947 0.98734 0.92271 0.91289 0.89333 0.91460 0.90266 0.91525 0.89300 0.91287 0.92157 0.91071 0.92185 0.89917 0.90524 0.93233 0.92849 0.92037 0.93261 0.90773 0.91193 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.37 37.16 0.31 -1.37 16 2 C 0.13 1.29 1.13 -90.62 -0.10 1.19 16 3 C -0.14 -0.96 8.85 37.15 0.33 -0.63 16 4 C -0.18 -1.76 8.37 37.16 0.31 -1.45 16 5 O -0.36 -4.25 8.74 -40.32 -0.35 -4.61 16 6 C 0.64 8.58 7.53 54.05 0.41 8.99 16 7 O -0.57 -8.54 11.52 -19.28 -0.22 -8.76 16 8 N -0.57 -7.23 3.20 -185.79 -0.59 -7.83 16 9 C 0.12 1.34 5.54 -5.76 -0.03 1.30 16 10 C -0.12 -1.49 4.83 -27.35 -0.13 -1.62 16 11 C -0.09 -1.24 3.60 -88.81 -0.32 -1.56 16 12 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 13 C 0.12 2.22 6.25 -2.28 -0.01 2.21 16 14 N -0.65 -14.42 3.34 -171.26 -0.57 -14.99 16 15 C 0.57 16.30 7.79 -12.99 -0.10 16.20 16 16 O -0.58 -18.79 15.35 5.20 0.08 -18.71 16 17 C -0.54 -15.13 8.99 -35.63 -0.32 -15.45 16 18 H 0.07 1.79 6.65 -52.49 -0.35 1.44 16 19 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 20 N -0.77 -22.99 11.83 55.55 0.66 -22.34 16 21 Si 0.91 20.09 29.56 -169.99 -5.02 15.07 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 25 C 0.13 2.27 5.30 -2.65 -0.01 2.25 16 26 C -0.11 -1.53 2.83 -91.04 -0.26 -1.79 16 27 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 28 C 0.15 1.94 5.13 -6.98 -0.04 1.91 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 1.03 5.88 -51.93 -0.31 0.72 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.76 7.83 -51.93 -0.41 0.35 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.08 6.71 -51.93 -0.35 0.73 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 1.01 7.78 -51.93 -0.40 0.61 16 44 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 45 H 0.05 0.86 7.24 -51.93 -0.38 0.49 16 46 H 0.07 1.36 7.17 -51.93 -0.37 0.99 16 47 H 0.07 0.94 7.78 -51.93 -0.40 0.54 16 48 H 0.07 0.85 7.96 -51.93 -0.41 0.44 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -34.97 371.76 -8.38 -43.36 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.89 Total: 0.71 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -0.07 Total: 12.50 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.51 Total: -45.16 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.49 Total: -32.08 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.97 -8.38 -43.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328599725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.566 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds