Wall clock time and date at job start Fri Apr 10 2020 18:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46653 * 2 1 4 4 C 1.53001 * 109.47278 * 239.99788 * 2 1 3 5 5 O 1.45198 * 109.46855 * 119.99696 * 2 1 3 6 6 C 1.34633 * 117.00154 * 60.00316 * 5 2 1 7 7 O 1.21508 * 119.99797 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99809 * 179.97438 * 6 5 2 9 9 C 1.46552 * 119.62027 * 0.02562 * 8 6 5 10 10 C 1.54007 * 110.89760 * 133.11064 * 9 8 6 11 11 C 1.51682 * 107.03151 * 51.14402 * 10 9 8 12 12 H 1.08993 * 110.50956 * 54.95142 * 11 10 9 13 13 C 1.53372 * 116.28244 * 183.50144 * 11 10 9 14 14 N 1.48614 * 103.35746 * 156.15139 * 13 11 10 15 15 C 1.34777 * 125.77488 * 155.52705 * 14 13 11 16 16 O 1.21693 * 120.00018 * 359.72240 * 15 14 13 17 17 C 1.46377 * 120.00307 * 179.97438 * 15 14 13 18 18 H 1.08001 * 119.99387 * 359.73219 * 17 15 14 19 19 C 1.40043 * 120.00458 * 179.72666 * 17 15 14 20 20 N 1.30674 * 120.00000 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00093 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47199 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46966 * 119.99861 * 21 19 17 24 24 H 1.48498 * 109.47127 * 239.99959 * 21 19 17 25 25 C 1.48185 * 108.44945 * 335.26968 * 14 13 11 26 26 C 1.52435 * 105.94192 * 357.16906 * 25 14 13 27 27 H 1.08998 * 110.03917 * 270.81540 * 26 25 14 28 28 C 1.47884 * 119.61290 * 180.02562 * 8 6 5 29 29 H 1.08992 * 109.47337 * 300.00002 * 1 2 3 30 30 H 1.08997 * 109.46829 * 60.00289 * 1 2 3 31 31 H 1.09004 * 109.46727 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47054 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47267 * 299.99442 * 3 2 1 34 34 H 1.09001 * 109.47703 * 60.00267 * 3 2 1 35 35 H 1.08992 * 109.46812 * 299.99930 * 4 2 1 36 36 H 1.09000 * 109.46845 * 59.99877 * 4 2 1 37 37 H 1.08998 * 109.46539 * 179.97438 * 4 2 1 38 38 H 1.08998 * 109.19589 * 253.47801 * 9 8 6 39 39 H 1.09009 * 109.19040 * 12.79764 * 9 8 6 40 40 H 1.09000 * 109.94011 * 170.52833 * 10 9 8 41 41 H 1.09003 * 109.93772 * 291.76720 * 10 9 8 42 42 H 1.09000 * 110.76860 * 37.65770 * 13 11 10 43 43 H 1.08997 * 110.59578 * 274.56957 * 13 11 10 44 44 H 0.97004 * 120.00230 * 180.02562 * 20 19 17 45 45 H 1.08998 * 110.15536 * 116.28600 * 25 14 13 46 46 H 1.08996 * 110.15791 * 237.97832 * 25 14 13 47 47 H 1.08990 * 110.12836 * 112.06292 * 28 8 6 48 48 H 1.09005 * 110.12779 * 350.33011 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9510 -2.5094 0.5041 8 7 2.0681 -2.6655 2.4168 9 6 2.9132 -2.0092 3.4182 10 6 2.3989 -2.2925 4.8419 11 6 2.2254 -3.7947 4.9609 12 1 3.1536 -4.3075 4.7087 13 6 1.6373 -4.3080 6.2811 14 7 1.0486 -5.6204 5.9074 15 6 0.8310 -6.6535 6.7452 16 8 1.1293 -6.5566 7.9210 17 6 0.2409 -7.8940 6.2397 18 1 -0.0241 -7.9798 5.1962 19 6 0.0200 -8.9695 7.1090 20 7 0.3403 -8.8655 8.3716 21 14 -0.7323 -10.5528 6.4637 22 1 -1.0018 -10.4162 5.0098 23 1 0.2118 -11.6769 6.6882 24 1 -2.0045 -10.8242 7.1800 25 6 0.7357 -5.5988 4.4592 26 6 1.0892 -4.1971 3.9753 27 1 0.2281 -3.5373 4.0807 28 6 1.6662 -4.0798 2.5759 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6768 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1301 -0.7208 -1.2493 38 1 3.9336 -2.3809 3.3252 39 1 2.9065 -0.9333 3.2431 40 1 3.1249 -1.9428 5.5759 41 1 1.4420 -1.7943 4.9975 42 1 0.8655 -3.6320 6.6491 43 1 2.4225 -4.4375 7.0259 44 1 0.1877 -9.6106 8.9737 45 1 1.3374 -6.3404 3.9338 46 1 -0.3247 -5.7955 4.3010 47 1 2.5344 -4.7304 2.4721 48 1 0.9099 -4.3404 1.8353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328599733.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:39 Heat of formation + Delta-G solvation = -111.440068 kcal Electronic energy + Delta-G solvation = -28660.095788 eV Core-core repulsion = 24715.150223 eV Total energy + Delta-G solvation = -3944.945565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.09789 -39.66794 -37.54885 -36.51264 -35.12509 -34.06553 -32.50526 -32.17203 -30.80166 -28.09830 -27.67281 -27.61024 -26.25792 -25.42659 -23.33314 -21.99513 -21.34163 -20.11220 -19.40444 -19.18447 -17.87519 -16.86817 -16.60839 -16.34600 -15.50793 -15.40468 -14.96663 -14.72316 -14.70006 -14.29897 -14.03064 -13.75164 -13.51304 -13.34556 -13.21741 -12.88856 -12.75394 -12.48405 -12.29350 -12.16969 -12.14403 -11.90300 -11.73336 -11.63592 -11.53457 -11.43273 -11.15443 -11.04038 -10.82197 -10.74439 -10.57778 -10.55080 -10.33075 -10.19157 -10.08526 -9.90085 -8.87167 -8.85692 -7.65263 -7.22485 -6.20982 -4.65347 1.99794 2.73871 3.12596 3.20952 3.25544 3.62965 4.06216 4.42835 4.45439 4.49797 4.50954 4.55230 4.64885 4.69210 4.85331 5.03867 5.18585 5.19552 5.27313 5.35657 5.38995 5.42034 5.48501 5.50712 5.61055 5.62877 5.66417 5.69779 5.72593 5.75911 5.78984 5.92308 5.98898 6.04310 6.05470 6.09649 6.30403 6.35739 6.39557 6.45649 6.61178 6.64390 7.23714 7.29047 7.43134 8.08703 8.22985 8.39799 9.01249 9.47236 10.56286 10.75280 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.002643 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.501886 B =10590.567253 C =11364.286796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.651 3.349 7 O -0.570 6.570 8 N -0.593 5.593 9 C 0.114 3.886 10 C -0.119 4.119 11 C -0.107 4.107 12 H 0.084 0.916 13 C 0.125 3.875 14 N -0.648 5.648 15 C 0.572 3.428 16 O -0.577 6.577 17 C -0.537 4.537 18 H 0.070 0.930 19 C 0.086 3.914 20 N -0.768 5.768 21 Si 0.908 3.092 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.136 3.864 26 C -0.124 4.124 27 H 0.082 0.918 28 C 0.144 3.856 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.268 0.732 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 18.328 -16.885 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.279 6.279 6 C 0.406 3.594 7 O -0.460 6.460 8 N -0.333 5.333 9 C -0.009 4.009 10 C -0.157 4.157 11 C -0.126 4.126 12 H 0.102 0.898 13 C 0.002 3.998 14 N -0.389 5.389 15 C 0.378 3.622 16 O -0.459 6.459 17 C -0.574 4.574 18 H 0.088 0.912 19 C -0.133 4.133 20 N -0.397 5.397 21 Si 0.732 3.268 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.201 1.201 25 C 0.011 3.989 26 C -0.143 4.143 27 H 0.100 0.900 28 C 0.023 3.977 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.356 18.108 -16.277 24.735 hybrid contribution -0.416 -0.706 -0.392 0.908 sum 3.940 17.402 -16.670 24.418 Atomic orbital electron populations 1.22514 0.94003 1.05178 1.02367 1.22046 0.94389 0.91468 0.82260 1.21853 1.02174 0.92639 1.03066 1.22509 1.01455 1.03605 0.96432 1.86291 1.71571 1.23817 1.46209 1.18023 0.78729 0.80421 0.82261 1.90883 1.41368 1.70384 1.43336 1.47224 1.53039 1.12097 1.20931 1.21716 0.93384 0.98001 0.87752 1.21737 1.02377 0.96095 0.95520 1.22201 0.98442 0.95197 0.96778 0.89787 1.21573 0.96770 0.86725 0.94749 1.49317 1.67969 1.13932 1.07665 1.18054 0.78430 0.81568 0.84123 1.90613 1.56639 1.82041 1.16622 1.20930 1.43324 0.96864 0.96297 0.91190 1.25739 0.93727 0.99543 0.94332 1.70033 1.35437 1.30539 1.03710 0.86312 0.79046 0.81527 0.79891 1.18680 1.20135 1.20138 1.21175 1.00039 0.93541 0.84131 1.22352 0.98576 0.99081 0.94338 0.89970 1.21494 1.00537 0.78263 0.97365 0.92197 0.91277 0.89280 0.91532 0.90243 0.91482 0.89302 0.91272 0.92270 0.91509 0.89322 0.90059 0.91066 0.93495 0.91543 0.92119 0.92586 0.92193 0.90446 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 2 C 0.14 1.26 1.13 -90.62 -0.10 1.16 16 3 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 4 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 5 O -0.36 -4.14 8.44 -40.30 -0.34 -4.48 16 6 C 0.65 8.46 7.70 54.06 0.42 8.88 16 7 O -0.57 -8.48 11.24 -19.28 -0.22 -8.70 16 8 N -0.59 -7.08 3.01 -178.39 -0.54 -7.62 16 9 C 0.11 1.13 6.33 -3.49 -0.02 1.10 16 10 C -0.12 -1.25 5.81 -26.87 -0.16 -1.41 16 11 C -0.11 -1.47 2.50 -89.66 -0.22 -1.70 16 12 H 0.08 1.16 8.05 -51.93 -0.42 0.75 16 13 C 0.13 2.34 6.56 -2.68 -0.02 2.32 16 14 N -0.65 -14.72 3.38 -172.36 -0.58 -15.30 16 15 C 0.57 16.46 7.79 -12.99 -0.10 16.35 16 16 O -0.58 -18.92 15.31 5.20 0.08 -18.84 16 17 C -0.54 -15.20 9.07 -35.63 -0.32 -15.52 16 18 H 0.07 1.83 7.16 -52.49 -0.38 1.45 16 19 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 20 N -0.77 -23.10 11.83 55.55 0.66 -22.44 16 21 Si 0.91 20.17 29.56 -169.99 -5.02 15.15 16 22 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 C 0.14 2.44 5.79 -3.40 -0.02 2.42 16 26 C -0.12 -1.74 2.50 -90.07 -0.23 -1.96 16 27 H 0.08 1.19 7.99 -51.93 -0.42 0.78 16 28 C 0.14 1.79 6.04 -3.88 -0.02 1.77 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 1.03 5.88 -51.93 -0.31 0.72 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.81 6.87 -51.92 -0.36 0.45 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 44 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 45 H 0.06 0.98 8.06 -51.93 -0.42 0.57 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 48 H 0.10 1.30 7.01 -51.93 -0.36 0.93 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -35.38 375.35 -8.25 -43.63 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.00 Total: 0.59 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 0.06 Total: 12.37 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.46 Total: -45.37 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.48 Total: -32.02 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.38 -8.25 -43.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328599733.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.810 kcal (2) G-P(sol) polarization free energy of solvation -35.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds