Wall clock time and date at job start Fri Apr 10 2020 18:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47093 * 2 1 4 4 C 1.50696 * 109.47265 * 119.99994 * 2 1 3 5 5 O 1.21283 * 120.00191 * 258.56289 * 4 2 1 6 6 N 1.34775 * 120.00011 * 78.56839 * 4 2 1 7 7 C 1.46927 * 120.63304 * 3.66411 * 6 4 2 8 8 C 1.53185 * 108.77573 * 126.37275 * 7 6 4 9 9 C 1.53036 * 109.31512 * 54.63865 * 8 7 6 10 10 C 1.53077 * 109.65866 * 298.70008 * 9 8 7 11 11 C 1.46931 * 120.63049 * 183.64534 * 6 4 2 12 12 H 1.09009 * 109.58514 * 113.69561 * 11 6 4 13 13 C 1.50695 * 109.58680 * 353.41695 * 11 6 4 14 14 O 1.21277 * 120.00137 * 294.12833 * 13 11 6 15 15 N 1.34780 * 120.00450 * 114.12789 * 13 11 6 16 16 C 1.47578 * 134.49847 * 180.02562 * 15 13 11 17 17 C 1.53940 * 86.11667 * 155.35765 * 16 15 13 18 18 O 1.42902 * 113.74081 * 269.14984 * 17 16 15 19 19 C 1.50709 * 113.73768 * 137.95319 * 17 16 15 20 20 H 1.07995 * 120.00077 * 4.22114 * 19 17 16 21 21 C 1.37875 * 119.99733 * 183.93552 * 19 17 16 22 22 N 1.31512 * 120.00070 * 8.54542 * 21 19 17 23 23 Si 1.86796 * 119.99855 * 188.53579 * 21 19 17 24 24 H 1.48503 * 109.47104 * 94.99673 * 23 21 19 25 25 H 1.48508 * 109.47479 * 214.99214 * 23 21 19 26 26 H 1.48498 * 109.47505 * 334.99634 * 23 21 19 27 27 C 1.47582 * 134.48900 * 359.97438 * 15 13 11 28 28 H 1.08999 * 109.47311 * 305.04494 * 1 2 3 29 29 H 1.09001 * 109.47224 * 65.03937 * 1 2 3 30 30 H 1.09001 * 109.47382 * 185.03918 * 1 2 3 31 31 H 1.09005 * 109.47210 * 240.00408 * 2 1 3 32 32 H 1.08999 * 109.47332 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47215 * 300.00026 * 3 2 1 34 34 H 1.08999 * 109.47408 * 59.99964 * 3 2 1 35 35 H 1.08999 * 109.58838 * 246.16507 * 7 6 4 36 36 H 1.09003 * 109.58191 * 6.58707 * 7 6 4 37 37 H 1.08997 * 109.49727 * 174.59136 * 8 7 6 38 38 H 1.08999 * 109.49991 * 294.68353 * 8 7 6 39 39 H 1.09004 * 109.46185 * 58.64928 * 9 8 7 40 40 H 1.09000 * 109.46568 * 178.63153 * 9 8 7 41 41 H 1.09002 * 109.38974 * 301.28069 * 10 9 8 42 42 H 1.08995 * 109.62599 * 181.17162 * 10 9 8 43 43 H 1.09005 * 113.76492 * 41.05608 * 16 15 13 44 44 H 1.08998 * 113.86789 * 269.67736 * 16 15 13 45 45 H 0.96705 * 113.99336 * 169.07494 * 18 17 16 46 46 H 0.97002 * 120.00164 * 179.97438 * 22 21 19 47 47 H 1.08998 * 113.76574 * 90.33805 * 27 15 13 48 48 H 1.09002 * 113.77341 * 318.94349 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.4308 -0.0700 2.1802 6 7 2.0388 -2.0574 1.2754 7 6 1.6350 -2.8475 0.1043 8 6 2.7498 -3.8450 -0.2256 9 6 3.0661 -4.6801 1.0172 10 6 3.5548 -3.7643 2.1422 11 6 2.4503 -2.7636 2.4964 12 1 1.5964 -3.2954 2.9163 13 6 2.9718 -1.7707 3.5029 14 8 3.9905 -1.1537 3.2743 15 7 2.3061 -1.5683 4.6572 16 6 2.5158 -0.7030 5.8342 17 6 0.9960 -0.8116 6.0540 18 8 0.2460 0.2179 5.4062 19 6 0.6040 -1.0051 7.4963 20 1 1.3590 -0.9871 8.2682 21 6 -0.7194 -1.1994 7.8308 22 7 -1.6161 -1.3838 6.8866 23 14 -1.2386 -1.2010 9.6251 24 1 -1.7095 0.1551 10.0053 25 1 -2.3381 -2.1797 9.8215 26 1 -0.0813 -1.5795 10.4751 27 6 1.0740 -2.1224 5.2514 28 1 -0.3634 0.5901 0.8413 29 1 -0.3634 0.4337 -0.9317 30 1 -0.3634 -1.0237 0.0903 31 1 1.8933 -0.5138 -0.8901 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.7153 -3.3881 0.3278 36 1 1.4743 -2.1846 -0.7459 37 1 2.4233 -4.5018 -1.0319 38 1 3.6428 -3.3028 -0.5366 39 1 2.1664 -5.2026 1.3422 40 1 3.8422 -5.4072 0.7784 41 1 4.4417 -3.2246 1.8100 42 1 3.7997 -4.3618 3.0203 43 1 2.8529 0.3032 5.5851 44 1 3.1081 -1.1670 6.6228 45 1 -0.7087 0.0639 5.3994 46 1 -2.5471 -1.5209 7.1219 47 1 1.2422 -3.0056 5.8676 48 1 0.2603 -2.2491 4.5373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331905894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:46 Heat of formation + Delta-G solvation = -81.429668 kcal Electronic energy + Delta-G solvation = -30195.425331 eV Core-core repulsion = 26251.781114 eV Total energy + Delta-G solvation = -3943.644217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.71917 -38.89445 -37.49845 -36.72793 -34.36434 -33.72747 -32.71399 -32.20117 -31.34776 -28.42785 -27.13094 -26.09737 -25.09858 -25.01780 -23.76583 -22.83796 -20.49688 -20.10397 -18.82905 -18.07158 -17.44625 -16.77455 -16.17902 -15.85767 -15.30759 -15.22468 -14.79876 -14.46752 -14.29305 -14.18348 -13.94410 -13.92859 -13.63827 -13.27954 -13.03060 -12.57793 -12.44977 -12.26966 -12.19162 -12.07416 -11.88645 -11.67081 -11.51224 -11.48093 -11.24319 -11.10847 -11.04322 -10.99050 -10.94545 -10.82828 -10.68354 -10.42776 -10.22386 -9.32968 -9.06200 -8.95363 -8.69631 -8.49840 -8.22384 -7.54100 -6.30475 -4.38025 2.81245 2.95306 3.19976 3.28141 3.31149 3.71335 3.80304 4.26455 4.52570 4.59583 4.73794 4.78795 4.89115 4.93597 5.00795 5.04859 5.11402 5.18595 5.32469 5.39439 5.50399 5.60332 5.64401 5.70807 5.72803 5.75772 5.77382 5.88362 5.89336 5.92353 5.96018 6.09633 6.19955 6.26498 6.35372 6.37074 6.53148 6.60182 6.67424 6.80346 6.87947 7.17464 7.54027 7.70505 7.97896 8.48292 8.64150 8.79492 9.14222 9.32395 9.40096 10.76509 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.004177 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.832076 B = 6701.245579 C = 7312.830484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.133 4.133 4 C 0.503 3.497 5 O -0.479 6.479 6 N -0.607 5.607 7 C 0.108 3.892 8 C -0.136 4.136 9 C -0.117 4.117 10 C -0.120 4.120 11 C 0.133 3.867 12 H 0.082 0.918 13 C 0.553 3.447 14 O -0.548 6.548 15 N -0.631 5.631 16 C 0.119 3.881 17 C 0.241 3.759 18 O -0.563 6.563 19 C -0.536 4.536 20 H 0.069 0.931 21 C 0.075 3.925 22 N -0.894 5.894 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.272 1.272 27 C 0.082 3.918 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.381 0.619 46 H 0.269 0.731 47 H 0.078 0.922 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 -6.300 -16.029 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 C -0.191 4.191 4 C 0.290 3.710 5 O -0.350 6.350 6 N -0.344 5.344 7 C -0.014 4.014 8 C -0.174 4.174 9 C -0.155 4.155 10 C -0.159 4.159 11 C 0.026 3.974 12 H 0.100 0.900 13 C 0.342 3.658 14 O -0.427 6.427 15 N -0.366 5.366 16 C -0.003 4.003 17 C 0.199 3.801 18 O -0.372 6.372 19 C -0.575 4.575 20 H 0.088 0.912 21 C -0.128 4.128 22 N -0.533 5.533 23 Si 0.729 3.271 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.196 1.196 27 C -0.041 4.041 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.232 0.768 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.702 -5.391 -15.922 17.212 hybrid contribution -1.081 -0.604 0.917 1.540 sum 2.621 -5.995 -15.005 16.369 Atomic orbital electron populations 1.21763 0.92638 1.02643 1.02939 1.21268 0.97719 0.97828 0.96173 1.21631 1.01395 0.93740 1.02329 1.20803 0.78482 0.81693 0.90020 1.90902 1.43504 1.64251 1.36330 1.47966 1.68040 1.05393 1.13000 1.21790 0.97302 0.94245 0.88112 1.21939 0.99327 0.98062 0.98117 1.21508 1.01542 0.97574 0.94833 1.21801 0.98189 0.96670 0.99229 1.21106 0.97995 0.92981 0.85287 0.89986 1.19200 0.83518 0.81916 0.81156 1.90596 1.26460 1.48708 1.76947 1.49971 1.27192 1.42965 1.16449 1.23266 0.98223 0.94212 0.84572 1.19812 0.86881 0.83369 0.90021 1.86163 1.23557 1.47193 1.80247 1.21500 0.93487 1.50368 0.92105 0.91246 1.25029 0.96400 0.93163 0.98246 1.69692 1.02758 1.48117 1.32767 0.86425 0.78356 0.78026 0.84287 1.20375 1.21120 1.19612 1.24160 0.83910 1.01181 0.94870 0.91471 0.91618 0.92238 0.89454 0.92400 0.92283 0.91263 0.91261 0.89362 0.90637 0.91344 0.91562 0.91338 0.90387 0.90617 0.91398 0.90173 0.76818 0.92124 0.90410 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.98 37.15 0.33 -1.26 16 2 C -0.11 -1.38 2.40 -91.78 -0.22 -1.60 16 3 C -0.13 -1.75 8.64 37.16 0.32 -1.43 16 4 C 0.50 8.83 6.74 -10.99 -0.07 8.75 16 5 O -0.48 -11.07 11.57 -19.24 -0.22 -11.29 16 6 N -0.61 -9.20 2.97 -166.53 -0.50 -9.69 16 7 C 0.11 1.09 5.57 -3.71 -0.02 1.07 16 8 C -0.14 -1.19 6.08 -26.62 -0.16 -1.35 16 9 C -0.12 -1.14 5.88 -26.67 -0.16 -1.29 16 10 C -0.12 -1.64 5.30 -26.59 -0.14 -1.78 16 11 C 0.13 2.25 3.26 -68.75 -0.22 2.02 16 12 H 0.08 1.35 7.31 -51.92 -0.38 0.97 16 13 C 0.55 12.22 4.60 -10.99 -0.05 12.17 16 14 O -0.55 -13.88 15.26 -19.24 -0.29 -14.17 16 15 N -0.63 -14.51 3.61 -178.37 -0.64 -15.15 16 16 C 0.12 2.86 8.23 -2.98 -0.02 2.83 16 17 C 0.24 6.06 1.28 -90.87 -0.12 5.95 16 18 O -0.56 -15.19 13.43 -35.23 -0.47 -15.66 16 19 C -0.54 -13.97 8.59 -34.44 -0.30 -14.27 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C 0.07 1.91 5.35 -17.82 -0.10 1.81 16 22 N -0.89 -23.08 11.69 55.43 0.65 -22.43 16 23 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 C 0.08 1.86 7.50 -3.00 -0.02 1.83 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.62 7.31 -51.93 -0.38 0.24 16 31 H 0.09 0.87 6.46 -51.93 -0.34 0.53 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.72 5.31 -51.93 -0.28 0.44 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.20 7.86 -51.93 -0.41 0.80 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 44 H 0.08 1.76 8.09 -51.93 -0.42 1.34 16 45 H 0.38 10.12 7.26 45.56 0.33 10.45 16 46 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 47 H 0.08 1.69 8.09 -51.93 -0.42 1.27 16 48 H 0.06 1.41 8.05 -51.93 -0.42 0.99 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -33.28 377.17 -9.08 -42.36 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -7.31 Total: 11.95 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: -0.95 Total: 13.45 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.49 Total: -47.28 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.99 Total: -41.13 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.28 -9.08 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331905894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.065 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds