Wall clock time and date at job start Fri Apr 10 2020 18:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 113.53111 * 2 1 4 4 C 1.56564 * 114.55940 * 134.21485 * 2 1 3 5 5 H 1.09000 * 114.56029 * 315.12333 * 4 2 1 6 6 N 1.46500 * 114.56224 * 181.38171 * 4 2 1 7 7 C 1.34780 * 119.99561 * 88.19254 * 6 4 2 8 8 O 1.21344 * 120.00412 * 0.02562 * 7 6 4 9 9 C 1.49455 * 119.99681 * 180.02562 * 7 6 4 10 10 O 1.21354 * 119.99917 * 0.02562 * 9 7 6 11 11 N 1.34772 * 120.00038 * 180.27919 * 9 7 6 12 12 C 1.46502 * 120.00159 * 179.72699 * 11 9 7 13 13 C 1.52999 * 109.47120 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47267 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47124 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00484 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99729 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00403 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99787 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47324 * 90.00278 * 19 17 15 21 21 H 1.48506 * 109.46578 * 210.00223 * 19 17 15 22 22 H 1.48501 * 109.47111 * 329.99885 * 19 17 15 23 23 C 1.50325 * 81.36999 * 68.25390 * 4 2 1 24 24 H 1.09001 * 114.27980 * 288.97383 * 23 4 2 25 25 C 1.51862 * 127.88860 * 133.37061 * 23 4 2 26 26 C 1.55790 * 102.15789 * 241.64709 * 25 23 4 27 27 O 1.45701 * 105.24015 * 6.14794 * 26 25 23 28 28 C 1.40074 * 103.85899 * 30.48206 * 27 26 25 29 29 H 1.08998 * 110.77753 * 66.17056 * 28 27 26 30 30 H 1.09004 * 109.47361 * 271.84864 * 1 2 3 31 31 H 1.09001 * 109.47593 * 31.84841 * 1 2 3 32 32 H 1.09007 * 109.47233 * 151.84724 * 1 2 3 33 33 H 1.09000 * 109.47425 * 194.21534 * 3 2 1 34 34 H 1.09000 * 109.46688 * 314.21524 * 3 2 1 35 35 H 1.08997 * 109.47452 * 74.21261 * 3 2 1 36 36 H 0.96998 * 120.00609 * 268.20120 * 6 4 2 37 37 H 0.96999 * 120.00066 * 359.72260 * 11 9 7 38 38 H 1.08994 * 109.46973 * 299.99687 * 12 11 9 39 39 H 1.09004 * 109.46853 * 60.00290 * 12 11 9 40 40 H 1.09007 * 109.47183 * 299.99895 * 13 12 11 41 41 H 1.09004 * 109.47440 * 59.99791 * 13 12 11 42 42 H 1.08998 * 109.46994 * 300.00161 * 14 13 12 43 43 H 1.08997 * 109.47016 * 59.99854 * 14 13 12 44 44 H 0.96997 * 120.00130 * 180.02562 * 18 17 15 45 45 H 1.08995 * 110.85790 * 359.81008 * 25 23 4 46 46 H 1.08995 * 110.86800 * 123.27002 * 25 23 4 47 47 H 1.08994 * 110.24700 * 125.34850 * 26 25 23 48 48 H 1.08994 * 110.24764 * 247.27616 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1408 1.4028 0.0000 4 6 2.1807 -0.9930 1.0206 5 1 1.7300 -0.9827 2.0130 6 7 3.6453 -0.9702 1.0432 7 6 4.2934 -0.1059 1.8492 8 8 3.6638 0.6529 2.5564 9 6 5.7876 -0.0822 1.8718 10 8 6.4172 -0.8407 1.1642 11 7 6.4357 0.7781 2.6819 12 6 7.9003 0.7973 2.7085 13 6 8.3785 1.8568 3.7033 14 6 9.9082 1.8773 3.7307 15 6 10.3791 2.9212 4.7101 16 1 9.6595 3.5109 5.2586 17 6 11.7288 3.1229 4.9067 18 7 12.6052 2.4046 4.2393 19 14 12.3127 4.4165 6.1213 20 1 12.4615 3.8024 7.4652 21 1 13.6221 4.9577 5.6766 22 1 11.3186 5.5177 6.1876 23 6 1.5861 -1.9990 0.0749 24 1 0.4986 -2.0623 0.1136 25 6 2.2498 -3.2315 -0.5138 26 6 2.2112 -2.9269 -2.0412 27 8 1.7036 -1.5653 -2.1475 28 6 2.1504 -0.9479 -0.9722 29 1 3.2376 -0.8707 -0.9653 30 1 -0.3634 0.0332 1.0271 31 1 -0.3634 0.8729 -0.5423 32 1 -0.3634 -0.9061 -0.4849 33 1 3.1992 1.3382 -0.2524 34 1 1.6287 2.0219 -0.7366 35 1 2.0295 1.8476 0.9888 36 1 4.1487 -1.5769 0.4781 37 1 5.9324 1.3847 3.2473 38 1 8.2710 -0.1813 3.0133 39 1 8.2786 1.0358 1.7144 40 1 8.0078 2.8354 3.3981 41 1 8.0001 1.6188 4.6975 42 1 10.2792 0.8988 4.0356 43 1 10.2861 2.1155 2.7365 44 1 13.5547 2.5462 4.3779 45 1 3.2774 -3.3242 -0.1623 46 1 1.6785 -4.1296 -0.2792 47 1 3.2131 -2.9954 -2.4649 48 1 1.5397 -3.6204 -2.5473 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343304816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:51 Heat of formation + Delta-G solvation = -29.590024 kcal Electronic energy + Delta-G solvation = -27802.418750 eV Core-core repulsion = 23861.022470 eV Total energy + Delta-G solvation = -3941.396281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.01446 -40.42331 -38.53546 -37.17103 -35.75071 -34.05071 -33.31089 -32.17590 -31.28270 -29.39400 -28.06179 -27.29267 -25.64185 -24.24878 -23.76067 -22.68099 -20.88452 -20.53619 -20.40953 -19.24776 -18.56420 -17.20394 -16.68792 -16.36255 -16.20303 -16.15230 -15.89531 -15.29056 -15.07368 -14.80187 -14.62572 -14.45931 -14.17117 -13.85763 -13.81241 -13.37519 -13.06284 -12.54470 -12.33782 -12.33170 -12.06694 -11.92362 -11.84001 -11.74547 -11.73208 -11.49686 -11.27385 -11.15374 -10.93069 -10.79234 -10.62302 -10.30680 -9.93278 -9.85606 -9.76391 -9.41870 -9.18655 -9.15771 -9.03833 -8.39852 -6.04568 -4.07666 1.31092 2.15414 2.59421 3.09344 3.29822 3.36258 3.39096 3.45550 3.68140 3.77759 4.22923 4.31264 4.39871 4.43941 4.50868 4.56582 4.70263 4.81580 4.99553 5.00004 5.18891 5.26244 5.28690 5.31450 5.38503 5.45944 5.50566 5.54894 5.58790 5.59796 5.65068 5.69233 5.78913 5.96862 6.00754 6.04053 6.20633 6.48659 6.50489 6.62940 6.78896 6.92028 7.30124 7.59310 7.61865 7.70702 7.93409 7.97117 8.34704 8.98816 9.56810 11.06689 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.028591 B = 0.002029 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.085469 B =13799.886793 C =14308.436682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.057 4.057 3 C -0.137 4.137 4 C 0.153 3.847 5 H 0.111 0.889 6 N -0.688 5.688 7 C 0.512 3.488 8 O -0.508 6.508 9 C 0.500 3.500 10 O -0.527 6.527 11 N -0.689 5.689 12 C 0.113 3.887 13 C -0.123 4.123 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.196 4.196 24 H 0.138 0.862 25 C -0.143 4.143 26 C 0.047 3.953 27 O -0.356 6.356 28 C 0.024 3.976 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.414 0.586 37 H 0.412 0.588 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.261 0.739 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.379 -10.581 -10.523 30.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.194 4.194 4 C 0.047 3.953 5 H 0.129 0.871 6 N -0.344 5.344 7 C 0.293 3.707 8 O -0.382 6.382 9 C 0.279 3.721 10 O -0.404 6.404 11 N -0.341 5.341 12 C -0.009 4.009 13 C -0.161 4.161 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.215 4.215 24 H 0.155 0.845 25 C -0.181 4.181 26 C -0.029 4.029 27 O -0.274 6.274 28 C -0.034 4.034 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.253 0.747 37 H 0.247 0.753 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.086 0.914 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -26.259 -10.512 -10.717 30.247 hybrid contribution 0.698 0.494 0.676 1.090 sum -25.561 -10.018 -10.041 29.232 Atomic orbital electron populations 1.21768 0.91089 1.03035 1.02686 1.22299 0.96713 0.94474 0.92424 1.21748 1.00338 0.94401 1.02960 1.21435 0.79649 0.95565 0.98629 0.87136 1.45557 1.06000 1.39246 1.43593 1.20355 0.88959 0.81034 0.80305 1.90763 1.68449 1.38869 1.40070 1.19962 0.87800 0.82358 0.81965 1.90767 1.68244 1.40028 1.41330 1.46070 1.09193 1.37417 1.41391 1.21866 0.75950 1.01458 1.01590 1.21932 1.01138 0.96197 0.96792 1.19031 0.87124 0.97569 0.97601 1.21194 0.91692 1.19692 1.23529 0.92561 1.25030 0.96972 0.96304 0.96169 1.69960 1.01569 1.40269 1.41496 0.86570 0.78148 0.81812 0.81323 1.20641 1.21202 1.19857 1.24747 1.02439 0.94555 0.99716 0.84474 1.22348 1.01853 0.98417 0.95435 1.24121 0.99914 0.83181 0.95708 1.88408 1.75450 1.22818 1.40754 1.24466 0.97937 0.97988 0.83031 0.89123 0.91403 0.91485 0.91012 0.92765 0.92149 0.90835 0.74743 0.75250 0.91035 0.91041 0.92399 0.92405 0.96207 0.96192 0.92903 0.90614 0.89921 0.91441 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 8.69 37.15 0.32 -0.49 16 2 C -0.06 -0.47 1.58 -166.46 -0.26 -0.73 16 3 C -0.14 -1.28 8.19 37.16 0.30 -0.98 16 4 C 0.15 1.23 3.93 -80.81 -0.32 0.92 16 5 H 0.11 0.90 8.07 -51.93 -0.42 0.48 16 6 N -0.69 -6.58 3.99 -67.36 -0.27 -6.85 16 7 C 0.51 6.22 6.98 -11.58 -0.08 6.14 16 8 O -0.51 -6.83 15.38 5.50 0.08 -6.74 16 9 C 0.50 7.11 7.89 -11.58 -0.09 7.02 16 10 O -0.53 -8.59 16.48 5.49 0.09 -8.50 16 11 N -0.69 -9.90 5.55 -60.73 -0.34 -10.24 16 12 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 13 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 19 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.20 -1.31 4.24 -101.39 -0.43 -1.74 16 24 H 0.14 0.79 5.34 -51.93 -0.28 0.51 16 25 C -0.14 -0.83 6.65 -25.82 -0.17 -1.00 16 26 C 0.05 0.31 7.77 38.65 0.30 0.61 16 27 O -0.36 -3.41 11.43 -33.11 -0.38 -3.78 16 28 C 0.02 0.21 3.93 -38.84 -0.15 0.06 16 29 H 0.09 0.86 5.78 -51.93 -0.30 0.56 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.42 7.90 -51.93 -0.41 0.01 16 32 H 0.07 0.42 6.05 -51.92 -0.31 0.11 16 33 H 0.05 0.57 7.41 -51.93 -0.38 0.18 16 34 H 0.06 0.51 8.00 -51.93 -0.42 0.10 16 35 H 0.07 0.74 7.59 -51.93 -0.39 0.35 16 36 H 0.41 3.71 5.91 -40.82 -0.24 3.47 16 37 H 0.41 5.36 7.94 -40.82 -0.32 5.03 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.08 0.44 7.01 -51.93 -0.36 0.08 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -31.76 381.78 -8.25 -40.01 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.61 Total: 3.36 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.29 Total: -3.57 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.13 Total: -42.89 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.20 Total: -19.03 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.76 -8.25 -40.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343304816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.416 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds