Wall clock time and date at job start Fri Apr 10 2020 18:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 113.53111 * 2 1 4 4 C 1.56564 * 114.55940 * 134.21485 * 2 1 3 5 5 H 1.09000 * 114.56029 * 315.12333 * 4 2 1 6 6 N 1.46500 * 114.56224 * 181.38171 * 4 2 1 7 7 C 1.34780 * 119.99561 * 88.19254 * 6 4 2 8 8 O 1.21344 * 120.00412 * 0.02562 * 7 6 4 9 9 C 1.49455 * 119.99681 * 180.02562 * 7 6 4 10 10 O 1.21354 * 119.99917 * 0.02562 * 9 7 6 11 11 N 1.34772 * 120.00038 * 180.27919 * 9 7 6 12 12 C 1.46502 * 120.00159 * 179.72699 * 11 9 7 13 13 C 1.52999 * 109.47120 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47267 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47124 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00484 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99729 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00403 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99787 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47324 * 90.00278 * 19 17 15 21 21 H 1.48506 * 109.46578 * 210.00223 * 19 17 15 22 22 H 1.48501 * 109.47111 * 329.99885 * 19 17 15 23 23 C 1.50325 * 81.36999 * 68.25390 * 4 2 1 24 24 H 1.09001 * 114.27980 * 288.97383 * 23 4 2 25 25 C 1.51862 * 127.88860 * 133.37061 * 23 4 2 26 26 C 1.55790 * 102.15789 * 241.64709 * 25 23 4 27 27 O 1.45701 * 105.24015 * 6.14794 * 26 25 23 28 28 C 1.40074 * 103.85899 * 30.48206 * 27 26 25 29 29 H 1.08998 * 110.77753 * 66.17056 * 28 27 26 30 30 H 1.09004 * 109.47361 * 271.84864 * 1 2 3 31 31 H 1.09001 * 109.47593 * 31.84841 * 1 2 3 32 32 H 1.09007 * 109.47233 * 151.84724 * 1 2 3 33 33 H 1.09000 * 109.47425 * 194.21534 * 3 2 1 34 34 H 1.09000 * 109.46688 * 314.21524 * 3 2 1 35 35 H 1.08997 * 109.47452 * 74.21261 * 3 2 1 36 36 H 0.96998 * 120.00609 * 268.20120 * 6 4 2 37 37 H 0.96999 * 120.00066 * 359.72260 * 11 9 7 38 38 H 1.08994 * 109.46973 * 299.99687 * 12 11 9 39 39 H 1.09004 * 109.46853 * 60.00290 * 12 11 9 40 40 H 1.09007 * 109.47183 * 299.99895 * 13 12 11 41 41 H 1.09004 * 109.47440 * 59.99791 * 13 12 11 42 42 H 1.08998 * 109.46994 * 300.00161 * 14 13 12 43 43 H 1.08997 * 109.47016 * 59.99854 * 14 13 12 44 44 H 0.96997 * 120.00130 * 180.02562 * 18 17 15 45 45 H 1.08995 * 110.85790 * 359.81008 * 25 23 4 46 46 H 1.08995 * 110.86800 * 123.27002 * 25 23 4 47 47 H 1.08994 * 110.24700 * 125.34850 * 26 25 23 48 48 H 1.08994 * 110.24764 * 247.27616 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1408 1.4028 0.0000 4 6 2.1807 -0.9930 1.0206 5 1 1.7300 -0.9827 2.0130 6 7 3.6453 -0.9702 1.0432 7 6 4.2934 -0.1059 1.8492 8 8 3.6638 0.6529 2.5564 9 6 5.7876 -0.0822 1.8718 10 8 6.4172 -0.8407 1.1642 11 7 6.4357 0.7781 2.6819 12 6 7.9003 0.7973 2.7085 13 6 8.3785 1.8568 3.7033 14 6 9.9082 1.8773 3.7307 15 6 10.3791 2.9212 4.7101 16 1 9.6595 3.5109 5.2586 17 6 11.7288 3.1229 4.9067 18 7 12.6052 2.4046 4.2393 19 14 12.3127 4.4165 6.1213 20 1 12.4615 3.8024 7.4652 21 1 13.6221 4.9577 5.6766 22 1 11.3186 5.5177 6.1876 23 6 1.5861 -1.9990 0.0749 24 1 0.4986 -2.0623 0.1136 25 6 2.2498 -3.2315 -0.5138 26 6 2.2112 -2.9269 -2.0412 27 8 1.7036 -1.5653 -2.1475 28 6 2.1504 -0.9479 -0.9722 29 1 3.2376 -0.8707 -0.9653 30 1 -0.3634 0.0332 1.0271 31 1 -0.3634 0.8729 -0.5423 32 1 -0.3634 -0.9061 -0.4849 33 1 3.1992 1.3382 -0.2524 34 1 1.6287 2.0219 -0.7366 35 1 2.0295 1.8476 0.9888 36 1 4.1487 -1.5769 0.4781 37 1 5.9324 1.3847 3.2473 38 1 8.2710 -0.1813 3.0133 39 1 8.2786 1.0358 1.7144 40 1 8.0078 2.8354 3.3981 41 1 8.0001 1.6188 4.6975 42 1 10.2792 0.8988 4.0356 43 1 10.2861 2.1155 2.7365 44 1 13.5547 2.5462 4.3779 45 1 3.2774 -3.3242 -0.1623 46 1 1.6785 -4.1296 -0.2792 47 1 3.2131 -2.9954 -2.4649 48 1 1.5397 -3.6204 -2.5473 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343304816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:50 Heat of formation + Delta-G solvation = -51.466365 kcal Electronic energy + Delta-G solvation = -27803.367380 eV Core-core repulsion = 23861.022470 eV Total energy + Delta-G solvation = -3942.344910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.66274 -41.49742 -39.58857 -37.87269 -37.17599 -35.38121 -34.70081 -33.06388 -32.76679 -30.02978 -29.08548 -28.53625 -26.71031 -25.40546 -24.36901 -24.08981 -22.38602 -21.62151 -21.12524 -19.94758 -19.65852 -18.51412 -18.07118 -17.46713 -17.14397 -16.97956 -16.73136 -16.52048 -16.32251 -16.08996 -15.63873 -15.37817 -15.21458 -14.88726 -14.51419 -14.29563 -14.27054 -13.78869 -13.70650 -13.53287 -13.18702 -12.94362 -12.78234 -12.76470 -12.69368 -12.55142 -12.41029 -12.31239 -12.09007 -11.87642 -11.73293 -11.70816 -11.56603 -11.24412 -10.92561 -10.72755 -10.55229 -10.46333 -10.32998 -9.86702 -8.19911 -6.30761 0.24170 1.16215 1.42005 1.42775 1.53868 2.01132 2.03288 2.40293 2.48807 3.04076 3.10401 3.14071 3.34871 3.63735 3.80920 3.93253 4.06371 4.06827 4.12176 4.16938 4.28160 4.39131 4.45008 4.51356 4.56739 4.70620 4.74736 4.80797 4.84468 4.87709 4.90512 4.94120 4.98973 5.07413 5.10874 5.14076 5.16836 5.20865 5.26272 5.37979 5.51146 5.70103 5.79813 5.84013 5.89630 6.20818 6.25147 6.62228 6.84734 6.86362 7.38645 8.91976 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.028591 B = 0.002029 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.085469 B =13799.886793 C =14308.436682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.057 4.057 3 C -0.136 4.136 4 C 0.146 3.854 5 H 0.117 0.883 6 N -0.675 5.675 7 C 0.520 3.480 8 O -0.521 6.521 9 C 0.500 3.500 10 O -0.549 6.549 11 N -0.684 5.684 12 C 0.127 3.873 13 C -0.105 4.105 14 C 0.025 3.975 15 C -0.541 4.541 16 H 0.064 0.936 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.965 3.035 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.262 1.262 23 C -0.175 4.175 24 H 0.154 0.846 25 C -0.140 4.140 26 C 0.042 3.958 27 O -0.377 6.377 28 C 0.009 3.991 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.417 0.583 37 H 0.420 0.580 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.068 0.932 42 H -0.004 1.004 43 H -0.004 1.004 44 H 0.263 0.737 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.066 0.934 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.529 -10.756 -9.874 32.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.193 4.193 4 C 0.042 3.958 5 H 0.134 0.866 6 N -0.330 5.330 7 C 0.300 3.700 8 O -0.396 6.396 9 C 0.280 3.720 10 O -0.427 6.427 11 N -0.336 5.336 12 C 0.004 3.996 13 C -0.143 4.143 14 C -0.013 4.013 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.186 1.186 23 C -0.193 4.193 24 H 0.171 0.829 25 C -0.178 4.178 26 C -0.034 4.034 27 O -0.296 6.296 28 C -0.049 4.049 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.257 0.743 37 H 0.258 0.742 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.015 0.985 43 H 0.014 0.986 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.120 0.880 47 H 0.085 0.915 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -28.450 -10.697 -10.075 32.020 hybrid contribution 1.354 0.508 0.387 1.497 sum -27.096 -10.189 -9.688 30.526 Atomic orbital electron populations 1.21777 0.89384 1.03441 1.03655 1.22400 0.97932 0.93440 0.92112 1.21716 0.99460 0.95563 1.02541 1.21584 0.78384 0.96624 0.99228 0.86574 1.45519 1.06918 1.38149 1.42384 1.19862 0.87712 0.81553 0.80832 1.90763 1.68205 1.39659 1.40996 1.20340 0.88889 0.81579 0.81153 1.90756 1.69028 1.40843 1.42121 1.45866 1.08132 1.37843 1.41773 1.21485 0.77468 1.00262 1.00396 1.21639 0.97045 0.97527 0.98128 1.18933 0.91072 0.95678 0.95623 1.21675 0.92226 1.20169 1.23874 0.91737 1.25989 0.97297 0.98586 0.98135 1.70095 1.01925 1.42094 1.43246 0.85443 0.77658 0.79121 0.78798 1.19827 1.21003 1.18626 1.24765 1.03132 0.94085 0.97366 0.82879 1.22375 1.02028 0.98751 0.94656 1.24292 1.00347 0.82271 0.96494 1.88381 1.75683 1.24205 1.41333 1.24444 0.97290 0.99413 0.83790 0.90572 0.90101 0.91490 0.90252 0.94488 0.91589 0.91645 0.74345 0.74230 0.91650 0.91812 0.91466 0.91348 0.98531 0.98594 0.92794 0.90840 0.87964 0.91550 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 8.69 71.98 0.63 -0.68 16 2 C -0.06 -0.86 1.58 -59.92 -0.09 -0.95 16 3 C -0.14 -2.48 8.19 71.98 0.59 -1.89 16 4 C 0.15 2.13 3.93 36.65 0.14 2.28 16 5 H 0.12 1.64 8.07 -2.39 -0.02 1.62 16 6 N -0.68 -12.35 3.99 -485.38 -1.94 -14.29 16 7 C 0.52 12.29 6.98 87.27 0.61 12.90 16 8 O -0.52 -13.53 15.38 -3.23 -0.05 -13.58 16 9 C 0.50 14.07 7.89 87.27 0.69 14.76 16 10 O -0.55 -17.92 16.48 -3.26 -0.05 -17.98 16 11 N -0.68 -19.30 5.55 -464.41 -2.58 -21.87 16 12 C 0.13 4.25 5.67 86.38 0.49 4.74 16 13 C -0.11 -3.99 5.27 30.60 0.16 -3.83 16 14 C 0.02 1.25 4.97 29.85 0.15 1.40 16 15 C -0.54 -30.00 9.11 25.60 0.23 -29.76 16 16 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 17 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 18 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 19 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 23 C -0.18 -1.95 4.24 -17.77 -0.08 -2.03 16 24 H 0.15 1.27 5.34 -2.39 -0.01 1.26 16 25 C -0.14 -1.32 6.65 31.18 0.21 -1.11 16 26 C 0.04 0.48 7.77 72.95 0.57 1.05 16 27 O -0.38 -6.78 11.43 -141.40 -1.62 -8.39 16 28 C 0.01 0.15 3.93 22.75 0.09 0.24 16 29 H 0.08 1.43 5.78 -2.39 -0.01 1.42 16 30 H 0.08 0.64 8.14 -2.38 -0.02 0.63 16 31 H 0.07 0.72 7.90 -2.39 -0.02 0.70 16 32 H 0.08 0.72 6.05 -2.38 -0.01 0.70 16 33 H 0.04 0.78 7.41 -2.39 -0.02 0.77 16 34 H 0.07 1.09 8.00 -2.39 -0.02 1.07 16 35 H 0.06 1.29 7.59 -2.39 -0.02 1.28 16 36 H 0.42 7.23 5.91 -92.71 -0.55 6.68 16 37 H 0.42 10.50 7.94 -92.71 -0.74 9.76 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 45 H 0.07 0.74 7.01 -2.39 -0.02 0.72 16 46 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -68.33 381.78 0.62 -67.71 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.30 Total: 21.35 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 4.84 Total: -2.56 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -4.23 Total: -92.28 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.72 Total: -39.95 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -68.33 0.62 -67.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343304816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.239 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds