Wall clock time and date at job start Fri Apr 10 2020 18:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 113.52981 * 2 1 4 4 C 1.56567 * 114.55772 * 134.21243 * 2 1 3 5 5 H 1.09006 * 114.56005 * 44.79095 * 4 2 1 6 6 N 1.46506 * 114.55727 * 271.04826 * 4 2 1 7 7 C 1.34779 * 119.99711 * 159.55289 * 6 4 2 8 8 O 1.21346 * 120.00269 * 359.97438 * 7 6 4 9 9 C 1.49447 * 119.99655 * 180.02562 * 7 6 4 10 10 O 1.21357 * 120.00061 * 359.97438 * 9 7 6 11 11 N 1.34774 * 120.00041 * 179.97438 * 9 7 6 12 12 C 1.46499 * 120.00088 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47246 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47492 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47473 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99837 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99894 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99788 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99675 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47335 * 59.99971 * 19 17 15 21 21 H 1.48500 * 109.47411 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47173 * 300.00027 * 19 17 15 23 23 C 1.50327 * 81.36492 * 157.91624 * 4 2 1 24 24 H 1.09004 * 114.28040 * 71.08154 * 23 4 2 25 25 C 1.52016 * 127.12393 * 226.69859 * 23 4 2 26 26 C 1.55787 * 101.82408 * 119.02455 * 25 23 4 27 27 O 1.46080 * 105.44593 * 353.10990 * 26 25 23 28 28 C 1.40076 * 103.54062 * 329.96426 * 27 26 25 29 29 H 1.08992 * 110.76829 * 293.93852 * 28 27 26 30 30 H 1.08995 * 109.46977 * 285.78885 * 1 2 3 31 31 H 1.08996 * 109.46871 * 45.79190 * 1 2 3 32 32 H 1.08999 * 109.46980 * 165.78990 * 1 2 3 33 33 H 1.09003 * 109.47193 * 207.30334 * 3 2 1 34 34 H 1.08995 * 109.47386 * 327.30451 * 3 2 1 35 35 H 1.09005 * 109.47281 * 87.30449 * 3 2 1 36 36 H 0.96991 * 119.99910 * 339.54747 * 6 4 2 37 37 H 0.97001 * 120.00012 * 0.02562 * 11 9 7 38 38 H 1.09002 * 109.47041 * 60.00629 * 12 11 9 39 39 H 1.08998 * 109.47349 * 300.00104 * 12 11 9 40 40 H 1.08998 * 109.47700 * 59.99683 * 13 12 11 41 41 H 1.09000 * 109.47185 * 300.00216 * 13 12 11 42 42 H 1.09002 * 109.47202 * 59.99959 * 14 13 12 43 43 H 1.09000 * 109.46798 * 300.00105 * 14 13 12 44 44 H 0.97005 * 119.99400 * 179.97438 * 18 17 15 45 45 H 1.08996 * 111.48152 * 0.76176 * 25 23 4 46 46 H 1.08996 * 110.74251 * 236.95359 * 25 23 4 47 47 H 1.09006 * 110.24669 * 234.11935 * 26 25 23 48 48 H 1.09000 * 110.32635 * 112.14923 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1408 1.4027 0.0000 4 6 2.1807 -0.9930 1.0207 5 1 1.7291 -1.9849 1.0386 6 7 2.4116 -0.4313 2.3540 7 6 2.5680 -1.2507 3.4126 8 8 2.5171 -2.4537 3.2615 9 6 2.8029 -0.6777 4.7727 10 8 2.8534 0.5253 4.9238 11 7 2.9588 -1.4970 5.8314 12 6 3.1897 -0.9354 7.1646 13 6 3.3321 -2.0717 8.1791 14 6 3.5725 -1.4851 9.5716 15 6 3.7122 -2.6045 10.5710 16 1 3.6373 -3.6315 10.2455 17 6 3.9365 -2.3173 11.9008 18 7 4.0281 -1.0667 12.2970 19 14 4.1103 -3.7047 13.1393 20 1 5.2586 -4.5663 12.7597 21 1 4.3436 -3.1354 14.4909 22 1 2.8662 -4.5154 13.1523 23 6 3.3395 -0.8512 0.0737 24 1 3.8333 0.1198 0.1118 25 6 4.1919 -1.9681 -0.5069 26 6 3.9380 -1.8020 -2.0349 27 8 2.8947 -0.7858 -2.1478 28 6 2.1504 -0.9479 -0.9722 29 1 1.6452 -1.9136 -0.9647 30 1 -0.3633 0.2796 0.9888 31 1 -0.3633 0.7165 -0.7366 32 1 -0.3633 -0.9962 -0.2523 33 1 3.1231 1.3713 -0.4714 34 1 1.4930 2.0811 -0.5551 35 1 2.2416 1.7552 1.0266 36 1 2.4520 0.5302 2.4748 37 1 2.9188 -2.4587 5.7105 38 1 2.3469 -0.3026 7.4432 39 1 4.1031 -0.3407 7.1551 40 1 4.1748 -2.7042 7.9004 41 1 2.4189 -2.6668 8.1887 42 1 2.7294 -0.8530 9.8501 43 1 4.4856 -0.8898 9.5623 44 1 4.1856 -0.8647 13.2326 45 1 3.8572 -2.9462 -0.1617 46 1 5.2444 -1.8137 -0.2693 47 1 3.5958 -2.7435 -2.4649 48 1 4.8465 -1.4674 -2.5356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343304822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:55 Heat of formation + Delta-G solvation = -42.002451 kcal Electronic energy + Delta-G solvation = -27343.812653 eV Core-core repulsion = 23401.878129 eV Total energy + Delta-G solvation = -3941.934524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.76813 -40.45683 -38.51450 -37.32194 -35.71734 -33.89903 -33.25107 -32.29798 -31.26625 -29.48737 -28.33995 -27.38664 -25.72959 -24.16164 -23.45276 -22.28344 -20.83740 -20.70830 -20.31636 -19.63826 -18.38938 -17.45449 -16.57098 -16.38316 -16.29013 -15.99641 -15.67182 -15.24450 -15.17263 -14.83908 -14.53532 -14.46404 -14.33004 -13.88701 -13.63684 -13.39718 -12.95047 -12.74470 -12.42365 -12.31665 -12.09180 -11.91775 -11.89256 -11.81231 -11.80222 -11.71972 -11.21863 -11.15251 -10.90483 -10.77898 -10.64547 -10.33327 -9.91750 -9.89255 -9.61883 -9.39660 -9.35435 -9.15627 -9.00922 -8.38967 -6.03846 -4.06961 1.36076 2.20281 2.62181 3.14567 3.31529 3.36178 3.38296 3.49618 3.61238 3.88309 4.08245 4.34931 4.41321 4.42966 4.46840 4.55156 4.71857 4.78499 4.93342 4.96655 5.04724 5.16383 5.29831 5.30538 5.32020 5.40327 5.41013 5.49739 5.56952 5.58533 5.65993 5.66856 5.77266 5.80415 5.97026 6.05787 6.23979 6.40775 6.51907 6.66659 6.87877 6.93242 7.36229 7.59927 7.67382 7.71685 7.94217 8.01389 8.35447 8.99253 9.57330 11.07353 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.001885 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.105720 B =14851.335673 C =15272.914972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 C -0.137 4.137 4 C 0.148 3.852 5 H 0.131 0.869 6 N -0.690 5.690 7 C 0.512 3.488 8 O -0.519 6.519 9 C 0.499 3.501 10 O -0.526 6.526 11 N -0.691 5.691 12 C 0.113 3.887 13 C -0.123 4.123 14 C 0.025 3.975 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.196 4.196 24 H 0.127 0.873 25 C -0.141 4.141 26 C 0.047 3.953 27 O -0.352 6.352 28 C 0.029 3.971 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.262 0.738 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.992 1.777 -30.423 30.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.053 4.053 3 C -0.194 4.194 4 C 0.043 3.957 5 H 0.148 0.852 6 N -0.344 5.344 7 C 0.293 3.707 8 O -0.395 6.395 9 C 0.279 3.721 10 O -0.403 6.403 11 N -0.342 5.342 12 C -0.009 4.009 13 C -0.161 4.161 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.216 4.216 24 H 0.145 0.855 25 C -0.178 4.178 26 C -0.029 4.029 27 O -0.271 6.271 28 C -0.030 4.030 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.251 0.749 37 H 0.247 0.753 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.984 2.024 -30.411 30.738 hybrid contribution 0.249 -0.943 0.858 1.299 sum -3.735 1.081 -29.553 29.807 Atomic orbital electron populations 1.21809 0.92531 1.02682 1.02771 1.22134 0.96002 0.95034 0.92134 1.21817 1.01600 0.93296 1.02641 1.22687 0.95743 0.98391 0.78857 0.85162 1.45674 1.71144 1.11104 1.06458 1.20391 0.77386 0.86862 0.86058 1.90751 1.48581 1.14378 1.85743 1.20003 0.79315 0.87106 0.85674 1.90763 1.49781 1.14220 1.85548 1.46074 1.69221 1.11015 1.07912 1.21852 1.01867 0.98034 0.79097 1.21928 1.01227 0.96213 0.96706 1.19029 0.97440 0.96441 0.88387 1.21159 1.49530 0.92923 0.92567 0.92626 1.25028 0.95309 0.95534 0.98601 1.69953 1.49376 1.17504 1.16443 0.86625 0.78645 0.82214 0.80317 1.20225 1.21277 1.20226 1.25096 0.95657 1.01573 0.99250 0.85534 1.22377 1.01294 0.99295 0.94877 1.24211 0.90913 0.91673 0.96083 1.88501 1.42319 1.56371 1.39866 1.23744 0.96492 0.99109 0.83670 0.89260 0.91494 0.91633 0.91934 0.90684 0.91134 0.91612 0.74879 0.75310 0.91052 0.91079 0.92433 0.92424 0.96195 0.96205 0.92853 0.90188 0.90353 0.91524 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.36 37.16 0.35 -0.48 16 2 C -0.05 -0.34 1.52 -166.47 -0.25 -0.60 16 3 C -0.14 -0.82 8.60 37.15 0.32 -0.50 16 4 C 0.15 1.19 3.62 -80.79 -0.29 0.90 16 5 H 0.13 1.12 7.02 -51.93 -0.36 0.76 16 6 N -0.69 -6.61 5.37 -67.34 -0.36 -6.97 16 7 C 0.51 6.41 7.89 -11.59 -0.09 6.32 16 8 O -0.52 -7.36 16.12 5.50 0.09 -7.28 16 9 C 0.50 7.23 7.89 -11.59 -0.09 7.14 16 10 O -0.53 -8.66 16.48 5.49 0.09 -8.57 16 11 N -0.69 -10.11 5.55 -60.73 -0.34 -10.44 16 12 C 0.11 1.91 5.67 -4.04 -0.02 1.89 16 13 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.20 -1.48 4.11 -101.37 -0.42 -1.90 16 24 H 0.13 0.95 5.33 -51.93 -0.28 0.67 16 25 C -0.14 -0.97 6.88 -25.75 -0.18 -1.15 16 26 C 0.05 0.30 7.76 38.64 0.30 0.60 16 27 O -0.35 -3.09 11.46 -33.12 -0.38 -3.47 16 28 C 0.03 0.22 4.01 -38.88 -0.16 0.06 16 29 H 0.09 0.62 7.40 -51.93 -0.38 0.23 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 8.00 -51.93 -0.42 -0.06 16 32 H 0.06 0.35 7.94 -51.93 -0.41 -0.07 16 33 H 0.07 0.48 6.02 -51.93 -0.31 0.16 16 34 H 0.07 0.38 7.91 -51.93 -0.41 -0.03 16 35 H 0.07 0.37 6.50 -51.93 -0.34 0.03 16 36 H 0.41 3.61 6.49 -40.82 -0.27 3.35 16 37 H 0.41 5.48 7.94 -40.82 -0.32 5.16 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -32.07 387.39 -8.26 -40.34 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.69 Total: 3.02 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.22 Total: -3.03 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.04 Total: -43.23 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.20 Total: -19.31 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.07 -8.26 -40.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343304822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.664 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds