Wall clock time and date at job start Fri Apr 10 2020 18:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 113.52981 * 2 1 4 4 C 1.56567 * 114.55772 * 134.21243 * 2 1 3 5 5 H 1.09006 * 114.56005 * 44.79095 * 4 2 1 6 6 N 1.46506 * 114.55727 * 271.04826 * 4 2 1 7 7 C 1.34779 * 119.99711 * 159.55289 * 6 4 2 8 8 O 1.21346 * 120.00269 * 359.97438 * 7 6 4 9 9 C 1.49447 * 119.99655 * 180.02562 * 7 6 4 10 10 O 1.21357 * 120.00061 * 359.97438 * 9 7 6 11 11 N 1.34774 * 120.00041 * 179.97438 * 9 7 6 12 12 C 1.46499 * 120.00088 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47246 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47492 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47473 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99837 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99894 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99788 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99675 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47335 * 59.99971 * 19 17 15 21 21 H 1.48500 * 109.47411 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47173 * 300.00027 * 19 17 15 23 23 C 1.50327 * 81.36492 * 157.91624 * 4 2 1 24 24 H 1.09004 * 114.28040 * 71.08154 * 23 4 2 25 25 C 1.52016 * 127.12393 * 226.69859 * 23 4 2 26 26 C 1.55787 * 101.82408 * 119.02455 * 25 23 4 27 27 O 1.46080 * 105.44593 * 353.10990 * 26 25 23 28 28 C 1.40076 * 103.54062 * 329.96426 * 27 26 25 29 29 H 1.08992 * 110.76829 * 293.93852 * 28 27 26 30 30 H 1.08995 * 109.46977 * 285.78885 * 1 2 3 31 31 H 1.08996 * 109.46871 * 45.79190 * 1 2 3 32 32 H 1.08999 * 109.46980 * 165.78990 * 1 2 3 33 33 H 1.09003 * 109.47193 * 207.30334 * 3 2 1 34 34 H 1.08995 * 109.47386 * 327.30451 * 3 2 1 35 35 H 1.09005 * 109.47281 * 87.30449 * 3 2 1 36 36 H 0.96991 * 119.99910 * 339.54747 * 6 4 2 37 37 H 0.97001 * 120.00012 * 0.02562 * 11 9 7 38 38 H 1.09002 * 109.47041 * 60.00629 * 12 11 9 39 39 H 1.08998 * 109.47349 * 300.00104 * 12 11 9 40 40 H 1.08998 * 109.47700 * 59.99683 * 13 12 11 41 41 H 1.09000 * 109.47185 * 300.00216 * 13 12 11 42 42 H 1.09002 * 109.47202 * 59.99959 * 14 13 12 43 43 H 1.09000 * 109.46798 * 300.00105 * 14 13 12 44 44 H 0.97005 * 119.99400 * 179.97438 * 18 17 15 45 45 H 1.08996 * 111.48152 * 0.76176 * 25 23 4 46 46 H 1.08996 * 110.74251 * 236.95359 * 25 23 4 47 47 H 1.09006 * 110.24669 * 234.11935 * 26 25 23 48 48 H 1.09000 * 110.32635 * 112.14923 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1408 1.4027 0.0000 4 6 2.1807 -0.9930 1.0207 5 1 1.7291 -1.9849 1.0386 6 7 2.4116 -0.4313 2.3540 7 6 2.5680 -1.2507 3.4126 8 8 2.5171 -2.4537 3.2615 9 6 2.8029 -0.6777 4.7727 10 8 2.8534 0.5253 4.9238 11 7 2.9588 -1.4970 5.8314 12 6 3.1897 -0.9354 7.1646 13 6 3.3321 -2.0717 8.1791 14 6 3.5725 -1.4851 9.5716 15 6 3.7122 -2.6045 10.5710 16 1 3.6373 -3.6315 10.2455 17 6 3.9365 -2.3173 11.9008 18 7 4.0281 -1.0667 12.2970 19 14 4.1103 -3.7047 13.1393 20 1 5.2586 -4.5663 12.7597 21 1 4.3436 -3.1354 14.4909 22 1 2.8662 -4.5154 13.1523 23 6 3.3395 -0.8512 0.0737 24 1 3.8333 0.1198 0.1118 25 6 4.1919 -1.9681 -0.5069 26 6 3.9380 -1.8020 -2.0349 27 8 2.8947 -0.7858 -2.1478 28 6 2.1504 -0.9479 -0.9722 29 1 1.6452 -1.9136 -0.9647 30 1 -0.3633 0.2796 0.9888 31 1 -0.3633 0.7165 -0.7366 32 1 -0.3633 -0.9962 -0.2523 33 1 3.1231 1.3713 -0.4714 34 1 1.4930 2.0811 -0.5551 35 1 2.2416 1.7552 1.0266 36 1 2.4520 0.5302 2.4748 37 1 2.9188 -2.4587 5.7105 38 1 2.3469 -0.3026 7.4432 39 1 4.1031 -0.3407 7.1551 40 1 4.1748 -2.7042 7.9004 41 1 2.4189 -2.6668 8.1887 42 1 2.7294 -0.8530 9.8501 43 1 4.4856 -0.8898 9.5623 44 1 4.1856 -0.8647 13.2326 45 1 3.8572 -2.9462 -0.1617 46 1 5.2444 -1.8137 -0.2693 47 1 3.5958 -2.7435 -2.4649 48 1 4.8465 -1.4674 -2.5356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343304822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:55 Heat of formation + Delta-G solvation = -64.544020 kcal Electronic energy + Delta-G solvation = -27344.790129 eV Core-core repulsion = 23401.878129 eV Total energy + Delta-G solvation = -3942.912000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.37488 -41.54497 -39.59261 -37.99153 -37.15138 -35.35480 -34.55107 -33.03866 -32.86631 -30.02667 -29.02894 -28.81939 -26.90374 -25.21857 -24.41943 -23.40583 -22.36937 -21.39243 -21.37242 -20.34496 -19.42068 -18.53522 -18.20870 -17.50019 -17.23625 -16.78786 -16.61926 -16.41488 -16.24843 -15.96051 -15.82902 -15.28813 -15.19998 -14.79493 -14.76511 -14.26719 -14.06022 -13.78463 -13.54926 -13.51270 -13.24166 -12.97617 -12.85216 -12.72836 -12.59999 -12.54600 -12.45387 -12.43576 -12.32503 -11.80663 -11.70352 -11.69406 -11.55497 -11.25055 -10.87569 -10.77908 -10.53997 -10.32190 -10.22967 -10.09389 -8.19118 -6.30017 0.27661 1.22333 1.42375 1.44847 1.52738 1.99859 2.06732 2.41909 2.61480 2.91199 3.14667 3.28567 3.36979 3.52856 3.81974 3.91749 4.04810 4.08312 4.15396 4.18324 4.26219 4.36269 4.45143 4.46732 4.52648 4.69239 4.76611 4.82013 4.86475 4.91142 4.91622 4.91708 4.98817 5.05790 5.08354 5.15036 5.19956 5.22801 5.30749 5.34576 5.51655 5.70995 5.83180 5.84653 5.90190 6.22942 6.30740 6.67348 6.86704 6.88779 7.39202 8.92484 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.001885 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.105720 B =14851.335673 C =15272.914972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.043 4.043 3 C -0.138 4.138 4 C 0.141 3.859 5 H 0.127 0.873 6 N -0.674 5.674 7 C 0.519 3.481 8 O -0.537 6.537 9 C 0.501 3.499 10 O -0.547 6.547 11 N -0.686 5.686 12 C 0.127 3.873 13 C -0.106 4.106 14 C 0.025 3.975 15 C -0.543 4.543 16 H 0.064 0.936 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.965 3.035 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.267 1.267 23 C -0.200 4.200 24 H 0.128 0.872 25 C -0.141 4.141 26 C 0.047 3.953 27 O -0.371 6.371 28 C 0.030 3.970 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.418 0.582 37 H 0.419 0.581 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.067 0.933 42 H -0.004 1.004 43 H -0.004 1.004 44 H 0.263 0.737 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.220 0.681 -31.669 31.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.044 4.044 3 C -0.194 4.194 4 C 0.037 3.963 5 H 0.145 0.855 6 N -0.327 5.327 7 C 0.299 3.701 8 O -0.414 6.414 9 C 0.281 3.719 10 O -0.425 6.425 11 N -0.338 5.338 12 C 0.004 3.996 13 C -0.144 4.144 14 C -0.013 4.013 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.200 4.200 18 N -0.573 5.573 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.219 4.219 24 H 0.146 0.854 25 C -0.179 4.179 26 C -0.029 4.029 27 O -0.290 6.290 28 C -0.030 4.030 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.257 0.743 37 H 0.257 0.743 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.015 0.985 43 H 0.014 0.986 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.218 0.924 -31.703 31.996 hybrid contribution 0.327 -0.551 1.176 1.340 sum -3.891 0.372 -30.527 30.776 Atomic orbital electron populations 1.21826 0.91841 1.03189 1.02955 1.22104 0.96474 0.94915 0.90863 1.21839 1.01571 0.93041 1.02985 1.22856 0.96677 0.98751 0.77991 0.85538 1.45662 1.69508 1.11146 1.06409 1.19952 0.77785 0.86705 0.85657 1.90750 1.49964 1.14914 1.85756 1.20348 0.78443 0.86731 0.86367 1.90754 1.50633 1.15156 1.86004 1.45881 1.69271 1.11516 1.07132 1.21477 1.01363 0.96916 0.79837 1.21638 1.02024 0.96699 0.94015 1.18932 0.95302 0.95548 0.91501 1.21649 1.49038 0.93931 0.93455 0.91767 1.25989 0.94961 0.98120 1.00947 1.70092 1.50487 1.19765 1.16936 0.85495 0.79136 0.78959 0.77418 1.19160 1.21103 1.19157 1.25123 0.95949 1.01945 0.98924 0.85422 1.22393 1.01306 0.98902 0.95271 1.24324 0.90943 0.91806 0.95781 1.88477 1.42985 1.57199 1.40340 1.23795 0.96380 0.99545 0.83236 0.88813 0.91614 0.90890 0.91570 0.91005 0.90356 0.91242 0.74273 0.74334 0.91674 0.91747 0.91476 0.91439 0.98526 0.98557 0.92798 0.90423 0.90127 0.90435 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.36 71.98 0.67 -0.76 16 2 C -0.04 -0.50 1.52 -59.93 -0.09 -0.59 16 3 C -0.14 -1.45 8.60 71.98 0.62 -0.83 16 4 C 0.14 2.10 3.62 36.66 0.13 2.23 16 5 H 0.13 2.04 7.02 -2.38 -0.02 2.02 16 6 N -0.67 -12.14 5.37 -485.32 -2.61 -14.75 16 7 C 0.52 12.44 7.89 87.27 0.69 13.13 16 8 O -0.54 -14.61 16.12 -3.23 -0.05 -14.67 16 9 C 0.50 14.09 7.89 87.27 0.69 14.78 16 10 O -0.55 -17.72 16.48 -3.27 -0.05 -17.77 16 11 N -0.69 -19.46 5.55 -464.42 -2.58 -22.03 16 12 C 0.13 4.26 5.67 86.38 0.49 4.75 16 13 C -0.11 -4.01 5.27 30.59 0.16 -3.85 16 14 C 0.02 1.26 4.97 29.85 0.15 1.41 16 15 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 18 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 19 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 21 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 C -0.20 -2.78 4.11 -17.76 -0.07 -2.85 16 24 H 0.13 1.76 5.33 -2.38 -0.01 1.75 16 25 C -0.14 -1.77 6.88 31.23 0.21 -1.56 16 26 C 0.05 0.53 7.76 72.95 0.57 1.10 16 27 O -0.37 -5.97 11.46 -141.41 -1.62 -7.60 16 28 C 0.03 0.40 4.01 22.72 0.09 0.49 16 29 H 0.09 1.16 7.40 -2.39 -0.02 1.14 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.65 8.00 -2.39 -0.02 0.63 16 32 H 0.07 0.63 7.94 -2.39 -0.02 0.61 16 33 H 0.07 0.82 6.02 -2.39 -0.01 0.80 16 34 H 0.08 0.72 7.91 -2.39 -0.02 0.70 16 35 H 0.07 0.67 6.50 -2.38 -0.02 0.66 16 36 H 0.42 6.80 6.49 -92.72 -0.60 6.20 16 37 H 0.42 10.63 7.94 -92.71 -0.74 9.89 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 45 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 47 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -67.97 387.39 0.05 -67.92 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.36 Total: 21.27 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 5.01 Total: -2.05 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -4.90 Total: -92.78 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.73 Total: -40.03 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -67.97 0.05 -67.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343304822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.379 kcal (2) G-P(sol) polarization free energy of solvation -67.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds