Wall clock time and date at job start Fri Apr 10 2020 18:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46845 * 2 1 4 4 C 1.52995 * 109.47399 * 119.99940 * 2 1 3 5 5 C 1.53002 * 109.47196 * 65.11577 * 4 2 1 6 6 H 1.08998 * 109.29765 * 303.32642 * 5 4 2 7 7 C 1.52922 * 109.29876 * 183.74420 * 5 4 2 8 8 C 1.53351 * 108.67066 * 189.14336 * 7 5 4 9 9 H 1.09001 * 109.67190 * 187.30025 * 8 7 5 10 10 C 1.50701 * 109.67167 * 307.79292 * 8 7 5 11 11 O 1.21287 * 119.99872 * 95.87627 * 10 8 7 12 12 N 1.34778 * 120.00187 * 275.87375 * 10 8 7 13 13 C 1.47578 * 134.49315 * 174.81529 * 12 10 8 14 14 C 1.53944 * 86.11537 * 155.36138 * 13 12 10 15 15 O 1.42898 * 113.74447 * 269.15546 * 14 13 12 16 16 C 1.50703 * 113.73921 * 137.95311 * 14 13 12 17 17 H 1.07998 * 120.00233 * 5.47783 * 16 14 13 18 18 C 1.37879 * 119.99805 * 185.75070 * 16 14 13 19 19 N 1.31507 * 120.00090 * 9.40798 * 18 16 14 20 20 Si 1.86800 * 119.99690 * 189.41234 * 18 16 14 21 21 H 1.48503 * 109.46950 * 94.99447 * 20 18 16 22 22 H 1.48502 * 109.47045 * 214.98995 * 20 18 16 23 23 H 1.48497 * 109.47355 * 334.98994 * 20 18 16 24 24 C 1.47576 * 134.49101 * 354.81962 * 12 10 8 25 25 C 1.53066 * 108.42449 * 67.53016 * 8 7 5 26 26 C 1.50174 * 109.89825 * 311.11182 * 25 8 7 27 27 O 1.21277 * 118.24878 * 197.54719 * 26 25 8 28 28 N 1.33351 * 123.50793 * 17.54915 * 26 25 8 29 29 H 1.08997 * 109.47065 * 299.99706 * 1 2 3 30 30 H 1.08997 * 109.47385 * 60.00175 * 1 2 3 31 31 H 1.08998 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47065 * 240.00294 * 2 1 3 33 33 H 1.09005 * 109.46977 * 304.85249 * 3 2 1 34 34 H 1.08999 * 109.47360 * 64.85497 * 3 2 1 35 35 H 1.09004 * 109.46849 * 184.86174 * 3 2 1 36 36 H 1.09002 * 109.47128 * 305.11950 * 4 2 1 37 37 H 1.09001 * 109.47354 * 185.11572 * 4 2 1 38 38 H 1.08999 * 109.60513 * 69.38523 * 7 5 4 39 39 H 1.08997 * 109.73772 * 308.97289 * 7 5 4 40 40 H 1.09007 * 113.76743 * 41.06275 * 13 12 10 41 41 H 1.08992 * 113.87152 * 269.67932 * 13 12 10 42 42 H 0.96698 * 114.00006 * 168.57616 * 15 14 13 43 43 H 0.97006 * 119.99935 * 179.97438 * 19 18 16 44 44 H 1.09002 * 113.76612 * 90.33737 * 24 12 10 45 45 H 1.09000 * 113.77186 * 318.94117 * 24 12 10 46 46 H 1.08994 * 109.40356 * 71.22798 * 25 8 7 47 47 H 1.09003 * 109.39668 * 190.97495 * 25 8 7 48 48 H 0.97002 * 117.95231 * 177.80014 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6379 -2.1961 1.1866 6 1 0.5556 -2.2701 1.0802 7 6 2.0675 -2.8924 2.4785 8 6 1.8686 -4.4037 2.3112 9 1 2.0461 -4.9047 3.2628 10 6 0.4624 -4.6818 1.8460 11 8 0.2328 -4.8307 0.6644 12 7 -0.5401 -4.7652 2.7430 13 6 -2.0044 -4.9218 2.6460 14 6 -1.9287 -5.5229 4.0612 15 8 -1.7581 -6.9416 4.0753 16 6 -3.0283 -5.0542 4.9790 17 1 -3.8221 -4.4301 4.5959 18 6 -3.0179 -5.4175 6.3090 19 7 -1.9623 -6.0129 6.8197 20 14 -4.5031 -5.0641 7.3854 21 1 -5.3781 -6.2631 7.4307 22 1 -4.0502 -4.7297 8.7595 23 1 -5.2616 -3.9187 6.8217 24 6 -0.6144 -4.7366 4.2166 25 6 2.8666 -4.9104 1.2671 26 6 2.8152 -4.0385 0.0455 27 8 3.2866 -4.4676 -0.9862 28 7 2.2789 -2.8176 0.0345 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6074 1.9808 -0.8434 34 1 1.7494 1.9307 0.9303 35 1 3.1265 1.4438 -0.0871 36 1 1.6039 -0.2630 2.1368 37 1 3.1263 -0.6425 1.2962 38 1 1.4583 -2.5329 3.3078 39 1 3.1181 -2.6818 2.6783 40 1 -2.3205 -5.6330 1.8828 41 1 -2.5467 -3.9775 2.5981 42 1 -1.5364 -7.3024 4.9447 43 1 -1.9549 -6.2682 7.7555 44 1 -0.7468 -3.7369 4.6304 45 1 0.1791 -5.2999 4.7076 46 1 3.8724 -4.8869 1.6863 47 1 2.6141 -5.9345 0.9920 48 1 2.3180 -2.3112 -0.7919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356559620.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:04 Heat of formation + Delta-G solvation = -107.670435 kcal Electronic energy + Delta-G solvation = -29341.766597 eV Core-core repulsion = 25396.984496 eV Total energy + Delta-G solvation = -3944.782102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88917 -39.24198 -37.63272 -37.36210 -35.15193 -33.98330 -32.89698 -32.37003 -30.41965 -28.80271 -27.38588 -26.87951 -25.63749 -25.32222 -23.60803 -22.41821 -20.79624 -20.00364 -19.36864 -17.95551 -17.30633 -17.10518 -16.36405 -16.12968 -15.72984 -15.49278 -15.00343 -14.89216 -14.67069 -14.25513 -14.19479 -13.83948 -13.77885 -13.52407 -13.01832 -12.86326 -12.60525 -12.48860 -12.32334 -12.24962 -11.93926 -11.80371 -11.72705 -11.68547 -11.62614 -11.14598 -11.10073 -11.05880 -10.93760 -10.86231 -10.61613 -10.54591 -10.39444 -9.60821 -9.50638 -9.25775 -8.90169 -8.86490 -8.46346 -7.88130 -6.43571 -4.51213 2.89979 3.07565 3.12335 3.21373 3.23282 3.40034 3.48004 4.16488 4.32845 4.44852 4.55789 4.67006 4.72880 4.79229 4.85563 4.86280 5.09460 5.15802 5.30853 5.38402 5.41655 5.45887 5.48761 5.54472 5.59725 5.65977 5.71031 5.75069 5.81646 5.85967 5.90378 5.93206 5.97445 6.11075 6.12174 6.20685 6.31972 6.46630 6.55621 6.61709 6.92819 6.97049 7.52127 7.57879 7.81530 8.41409 8.42791 8.51211 8.67790 9.16174 9.21123 10.63633 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.003619 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.297861 B = 7734.580623 C = 8823.933721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.126 4.126 5 C 0.137 3.863 6 H 0.080 0.920 7 C -0.117 4.117 8 C -0.110 4.110 9 H 0.104 0.896 10 C 0.529 3.471 11 O -0.553 6.553 12 N -0.631 5.631 13 C 0.113 3.887 14 C 0.238 3.762 15 O -0.568 6.568 16 C -0.540 4.540 17 H 0.070 0.930 18 C 0.077 3.923 19 N -0.892 5.892 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.271 1.271 24 C 0.084 3.916 25 C -0.116 4.116 26 C 0.541 3.459 27 O -0.568 6.568 28 N -0.706 5.706 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.384 0.616 43 H 0.270 0.730 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.603 11.644 -3.987 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.164 4.164 5 C 0.032 3.968 6 H 0.098 0.902 7 C -0.156 4.156 8 C -0.132 4.132 9 H 0.122 0.878 10 C 0.317 3.683 11 O -0.432 6.432 12 N -0.364 5.364 13 C -0.009 4.009 14 C 0.197 3.803 15 O -0.376 6.376 16 C -0.579 4.579 17 H 0.088 0.912 18 C -0.127 4.127 19 N -0.530 5.530 20 Si 0.729 3.271 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.196 1.196 24 C -0.039 4.039 25 C -0.157 4.157 26 C 0.329 3.671 27 O -0.448 6.448 28 N -0.359 5.359 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.235 0.765 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 8.804 11.209 -5.520 15.285 hybrid contribution -0.675 0.348 1.203 1.423 sum 8.129 11.557 -4.318 14.774 Atomic orbital electron populations 1.21929 0.94825 1.02411 1.01854 1.21124 0.96323 0.96243 0.98070 1.21826 1.00797 0.95788 1.01892 1.22058 1.01647 0.93794 0.98870 1.21035 0.97975 0.92062 0.85696 0.90242 1.21851 1.03298 0.92899 0.97514 1.21387 0.93171 0.97684 1.00927 0.87775 1.19962 0.85916 0.77058 0.85352 1.90694 1.84226 1.51779 1.16551 1.50239 1.07436 1.69822 1.08928 1.23392 0.78789 0.99539 0.99160 1.19857 0.90741 0.79711 0.90031 1.86131 1.93200 1.21333 1.36948 1.21432 1.09835 1.32957 0.93627 0.91174 1.25021 0.96049 0.93880 0.97775 1.69721 1.27583 1.40818 1.14877 0.86426 0.82528 0.78904 0.79277 1.20306 1.21056 1.19596 1.24255 1.01300 1.01372 0.76960 1.21485 1.00170 1.00831 0.93165 1.19788 0.75902 0.81263 0.90177 1.90706 1.48625 1.71849 1.33610 1.45431 1.59045 1.16854 1.14534 0.92415 0.92719 0.92110 0.91414 0.92672 0.92537 0.92783 0.90182 0.91098 0.89108 0.89807 0.91243 0.89619 0.76542 0.91971 0.89970 0.91266 0.87874 0.87798 0.76954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.95 37.16 0.33 -1.10 16 2 C -0.10 -0.85 2.83 -90.62 -0.26 -1.10 16 3 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 4 C -0.13 -1.09 4.33 -26.73 -0.12 -1.20 16 5 C 0.14 1.58 2.24 -68.37 -0.15 1.43 16 6 H 0.08 1.10 5.54 -51.93 -0.29 0.81 16 7 C -0.12 -1.28 4.93 -26.59 -0.13 -1.41 16 8 C -0.11 -1.52 2.87 -91.56 -0.26 -1.78 16 9 H 0.10 1.32 7.96 -51.93 -0.41 0.91 16 10 C 0.53 9.67 5.85 -10.98 -0.06 9.61 16 11 O -0.55 -11.93 15.35 5.55 0.09 -11.84 16 12 N -0.63 -12.07 3.61 -178.34 -0.64 -12.72 16 13 C 0.11 2.32 8.23 -2.98 -0.02 2.30 16 14 C 0.24 5.33 1.27 -90.85 -0.12 5.21 16 15 O -0.57 -13.69 13.44 -35.23 -0.47 -14.16 16 16 C -0.54 -12.92 8.58 -34.44 -0.30 -13.21 16 17 H 0.07 1.66 7.83 -52.49 -0.41 1.24 16 18 C 0.08 1.82 5.34 -17.82 -0.10 1.73 16 19 N -0.89 -21.41 11.77 55.43 0.65 -20.76 16 20 Si 0.90 18.82 29.55 -169.99 -5.02 13.79 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 24 C 0.08 1.62 7.78 -2.98 -0.02 1.60 16 25 C -0.12 -1.63 5.21 -28.10 -0.15 -1.77 16 26 C 0.54 8.78 6.39 -11.87 -0.08 8.71 16 27 O -0.57 -11.33 17.78 5.56 0.10 -11.23 16 28 N -0.71 -9.52 4.92 -54.85 -0.27 -9.79 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.68 6.49 -51.93 -0.34 0.34 16 32 H 0.07 0.61 6.39 -51.93 -0.33 0.28 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 40 H 0.07 1.49 8.14 -51.92 -0.42 1.07 16 41 H 0.09 1.61 8.09 -51.93 -0.42 1.19 16 42 H 0.38 9.15 7.43 45.56 0.34 9.49 16 43 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 44 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 45 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 46 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.10 1.61 8.10 -51.93 -0.42 1.19 16 48 H 0.39 5.03 6.81 -40.82 -0.28 4.76 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -29.73 380.42 -8.11 -37.84 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -7.19 Total: 14.86 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -1.08 Total: 8.28 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.26 Total: -43.27 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.29 Total: -37.23 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.73 -8.11 -37.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356559620.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.832 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds