Wall clock time and date at job start Fri Apr 10 2020 18:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46845 * 2 1 4 4 C 1.52995 * 109.47399 * 119.99940 * 2 1 3 5 5 C 1.53002 * 109.47196 * 65.11577 * 4 2 1 6 6 H 1.08998 * 109.29765 * 303.32642 * 5 4 2 7 7 C 1.52922 * 109.29876 * 183.74420 * 5 4 2 8 8 C 1.53351 * 108.67066 * 189.14336 * 7 5 4 9 9 H 1.09001 * 109.67190 * 187.30025 * 8 7 5 10 10 C 1.50701 * 109.67167 * 307.79292 * 8 7 5 11 11 O 1.21287 * 119.99872 * 95.87627 * 10 8 7 12 12 N 1.34778 * 120.00187 * 275.87375 * 10 8 7 13 13 C 1.47578 * 134.49315 * 174.81529 * 12 10 8 14 14 C 1.53944 * 86.11537 * 155.36138 * 13 12 10 15 15 O 1.42898 * 113.74447 * 269.15546 * 14 13 12 16 16 C 1.50703 * 113.73921 * 137.95311 * 14 13 12 17 17 H 1.07998 * 120.00233 * 5.47783 * 16 14 13 18 18 C 1.37879 * 119.99805 * 185.75070 * 16 14 13 19 19 N 1.31507 * 120.00090 * 9.40798 * 18 16 14 20 20 Si 1.86800 * 119.99690 * 189.41234 * 18 16 14 21 21 H 1.48503 * 109.46950 * 94.99447 * 20 18 16 22 22 H 1.48502 * 109.47045 * 214.98995 * 20 18 16 23 23 H 1.48497 * 109.47355 * 334.98994 * 20 18 16 24 24 C 1.47576 * 134.49101 * 354.81962 * 12 10 8 25 25 C 1.53066 * 108.42449 * 67.53016 * 8 7 5 26 26 C 1.50174 * 109.89825 * 311.11182 * 25 8 7 27 27 O 1.21277 * 118.24878 * 197.54719 * 26 25 8 28 28 N 1.33351 * 123.50793 * 17.54915 * 26 25 8 29 29 H 1.08997 * 109.47065 * 299.99706 * 1 2 3 30 30 H 1.08997 * 109.47385 * 60.00175 * 1 2 3 31 31 H 1.08998 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47065 * 240.00294 * 2 1 3 33 33 H 1.09005 * 109.46977 * 304.85249 * 3 2 1 34 34 H 1.08999 * 109.47360 * 64.85497 * 3 2 1 35 35 H 1.09004 * 109.46849 * 184.86174 * 3 2 1 36 36 H 1.09002 * 109.47128 * 305.11950 * 4 2 1 37 37 H 1.09001 * 109.47354 * 185.11572 * 4 2 1 38 38 H 1.08999 * 109.60513 * 69.38523 * 7 5 4 39 39 H 1.08997 * 109.73772 * 308.97289 * 7 5 4 40 40 H 1.09007 * 113.76743 * 41.06275 * 13 12 10 41 41 H 1.08992 * 113.87152 * 269.67932 * 13 12 10 42 42 H 0.96698 * 114.00006 * 168.57616 * 15 14 13 43 43 H 0.97006 * 119.99935 * 179.97438 * 19 18 16 44 44 H 1.09002 * 113.76612 * 90.33737 * 24 12 10 45 45 H 1.09000 * 113.77186 * 318.94117 * 24 12 10 46 46 H 1.08994 * 109.40356 * 71.22798 * 25 8 7 47 47 H 1.09003 * 109.39668 * 190.97495 * 25 8 7 48 48 H 0.97002 * 117.95231 * 177.80014 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6379 -2.1961 1.1866 6 1 0.5556 -2.2701 1.0802 7 6 2.0675 -2.8924 2.4785 8 6 1.8686 -4.4037 2.3112 9 1 2.0461 -4.9047 3.2628 10 6 0.4624 -4.6818 1.8460 11 8 0.2328 -4.8307 0.6644 12 7 -0.5401 -4.7652 2.7430 13 6 -2.0044 -4.9218 2.6460 14 6 -1.9287 -5.5229 4.0612 15 8 -1.7581 -6.9416 4.0753 16 6 -3.0283 -5.0542 4.9790 17 1 -3.8221 -4.4301 4.5959 18 6 -3.0179 -5.4175 6.3090 19 7 -1.9623 -6.0129 6.8197 20 14 -4.5031 -5.0641 7.3854 21 1 -5.3781 -6.2631 7.4307 22 1 -4.0502 -4.7297 8.7595 23 1 -5.2616 -3.9187 6.8217 24 6 -0.6144 -4.7366 4.2166 25 6 2.8666 -4.9104 1.2671 26 6 2.8152 -4.0385 0.0455 27 8 3.2866 -4.4676 -0.9862 28 7 2.2789 -2.8176 0.0345 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6074 1.9808 -0.8434 34 1 1.7494 1.9307 0.9303 35 1 3.1265 1.4438 -0.0871 36 1 1.6039 -0.2630 2.1368 37 1 3.1263 -0.6425 1.2962 38 1 1.4583 -2.5329 3.3078 39 1 3.1181 -2.6818 2.6783 40 1 -2.3205 -5.6330 1.8828 41 1 -2.5467 -3.9775 2.5981 42 1 -1.5364 -7.3024 4.9447 43 1 -1.9549 -6.2682 7.7555 44 1 -0.7468 -3.7369 4.6304 45 1 0.1791 -5.2999 4.7076 46 1 3.8724 -4.8869 1.6863 47 1 2.6141 -5.9345 0.9920 48 1 2.3180 -2.3112 -0.7919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356559620.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:03 Heat of formation + Delta-G solvation = -128.962689 kcal Electronic energy + Delta-G solvation = -29342.689899 eV Core-core repulsion = 25396.984496 eV Total energy + Delta-G solvation = -3945.705403 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11084 -40.74213 -39.05886 -38.47233 -36.18596 -35.74978 -34.20781 -34.00140 -31.41668 -30.40024 -28.05630 -27.92564 -27.13980 -26.95484 -24.81781 -23.40090 -22.15205 -21.02968 -20.61371 -19.49812 -18.89010 -18.29734 -17.82112 -17.27690 -17.09766 -16.79218 -16.47787 -16.18959 -15.95850 -15.73414 -15.31763 -15.06630 -14.71526 -14.57161 -14.46089 -14.19234 -14.07555 -13.71960 -13.42510 -13.32343 -13.06522 -13.02796 -12.93187 -12.80402 -12.71969 -12.69593 -12.47262 -12.25634 -12.18649 -12.10756 -11.69936 -11.56819 -11.43686 -11.21889 -10.91351 -10.77351 -10.64028 -10.17098 -10.02074 -9.50431 -8.23500 -6.36331 1.46717 1.52764 1.59168 1.62618 1.69686 1.96010 2.36877 2.43698 2.99770 3.32164 3.49586 3.54880 3.64830 3.71824 3.84991 3.97734 4.04582 4.19607 4.21097 4.28139 4.45691 4.46905 4.51956 4.61687 4.65947 4.69599 4.73572 4.78463 4.84314 4.86468 4.91471 4.96590 4.99128 5.01543 5.04922 5.08909 5.15948 5.25116 5.33331 5.44812 5.46204 5.75017 5.83722 6.02391 6.38919 6.67076 6.90501 7.18220 7.23262 7.32363 7.37311 8.82665 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.003619 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.297861 B = 7734.580623 C = 8823.933721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.141 4.141 4 C -0.116 4.116 5 C 0.135 3.865 6 H 0.054 0.946 7 C -0.114 4.114 8 C -0.102 4.102 9 H 0.124 0.876 10 C 0.524 3.476 11 O -0.592 6.592 12 N -0.630 5.630 13 C 0.111 3.889 14 C 0.217 3.783 15 O -0.582 6.582 16 C -0.559 4.559 17 H 0.066 0.934 18 C 0.043 3.957 19 N -0.905 5.905 20 Si 0.955 3.045 21 H -0.284 1.284 22 H -0.280 1.280 23 H -0.269 1.269 24 C 0.104 3.896 25 C -0.114 4.114 26 C 0.532 3.468 27 O -0.616 6.616 28 N -0.698 5.698 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.050 0.950 41 H 0.101 0.899 42 H 0.382 0.618 43 H 0.273 0.727 44 H 0.095 0.905 45 H 0.073 0.927 46 H 0.144 0.856 47 H 0.083 0.917 48 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.787 13.600 -2.240 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.199 4.199 4 C -0.154 4.154 5 C 0.030 3.970 6 H 0.072 0.928 7 C -0.151 4.151 8 C -0.123 4.123 9 H 0.142 0.858 10 C 0.315 3.685 11 O -0.473 6.473 12 N -0.363 5.363 13 C -0.012 4.012 14 C 0.176 3.824 15 O -0.391 6.391 16 C -0.597 4.597 17 H 0.084 0.916 18 C -0.159 4.159 19 N -0.543 5.543 20 Si 0.781 3.219 21 H -0.210 1.210 22 H -0.206 1.206 23 H -0.194 1.194 24 C -0.018 4.018 25 C -0.154 4.154 26 C 0.320 3.680 27 O -0.500 6.500 28 N -0.348 5.348 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.069 0.931 41 H 0.119 0.881 42 H 0.232 0.768 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.161 0.839 47 H 0.101 0.899 48 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 9.979 13.201 -3.747 16.968 hybrid contribution -1.127 -0.284 0.602 1.309 sum 8.852 12.917 -3.145 15.972 Atomic orbital electron populations 1.21908 0.95713 1.00874 1.02348 1.21124 0.95523 0.97284 0.97872 1.21785 1.01183 0.94554 1.02352 1.22013 1.02628 0.91369 0.99373 1.21159 0.96401 0.94055 0.85344 0.92846 1.21968 1.05761 0.90178 0.97235 1.21437 0.89415 1.00222 1.01253 0.85829 1.20843 0.87379 0.75679 0.84634 1.90681 1.85053 1.53332 1.18282 1.50218 1.06953 1.70051 1.09042 1.23362 0.80389 0.99698 0.97709 1.20120 0.92285 0.79118 0.90832 1.86123 1.93368 1.22728 1.36867 1.21624 1.10444 1.33395 0.94234 0.91590 1.25565 0.97901 0.93847 0.98615 1.69765 1.28409 1.40969 1.15149 0.85591 0.79900 0.78339 0.78029 1.21015 1.20559 1.19364 1.23998 0.99542 1.01366 0.76912 1.21530 1.02379 0.99071 0.92419 1.20257 0.75477 0.81920 0.90304 1.90677 1.51028 1.72985 1.35321 1.45479 1.57734 1.16177 1.15417 0.91723 0.92467 0.94580 0.92302 0.92605 0.91800 0.92077 0.88642 0.89561 0.87817 0.86324 0.93150 0.88115 0.76799 0.91782 0.88727 0.90867 0.83874 0.89880 0.76857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.95 71.98 0.64 -2.08 16 2 C -0.10 -1.53 2.83 -10.79 -0.03 -1.56 16 3 C -0.14 -1.71 9.19 71.98 0.66 -1.05 16 4 C -0.12 -1.67 4.33 30.59 0.13 -1.54 16 5 C 0.13 2.85 2.24 45.11 0.10 2.95 16 6 H 0.05 1.45 5.54 -2.39 -0.01 1.44 16 7 C -0.11 -2.08 4.93 30.69 0.15 -1.93 16 8 C -0.10 -2.58 2.87 -11.40 -0.03 -2.61 16 9 H 0.12 2.71 7.96 -2.39 -0.02 2.69 16 10 C 0.52 18.88 5.85 87.66 0.51 19.40 16 11 O -0.59 -26.01 15.35 -3.05 -0.05 -26.06 16 12 N -0.63 -23.72 3.61 -840.38 -3.03 -26.75 16 13 C 0.11 4.60 8.23 86.48 0.71 5.31 16 14 C 0.22 9.69 1.27 -10.88 -0.01 9.68 16 15 O -0.58 -28.33 13.44 -148.98 -2.00 -30.34 16 16 C -0.56 -26.46 8.58 25.60 0.22 -26.24 16 17 H 0.07 3.10 7.83 -2.91 -0.02 3.07 16 18 C 0.04 2.01 5.34 84.66 0.45 2.46 16 19 N -0.90 -42.52 11.77 21.45 0.25 -42.26 16 20 Si 0.96 37.83 29.55 68.60 2.03 39.86 16 21 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 24 C 0.10 3.89 7.78 86.48 0.67 4.56 16 25 C -0.11 -3.02 5.21 29.71 0.15 -2.86 16 26 C 0.53 17.02 6.39 87.71 0.56 17.58 16 27 O -0.62 -25.01 17.78 -3.02 -0.05 -25.06 16 28 N -0.70 -18.29 4.92 -446.64 -2.20 -20.48 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.82 6.49 -2.39 -0.02 0.80 16 32 H 0.06 1.01 6.39 -2.39 -0.02 1.00 16 33 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.12 1.45 8.11 -2.39 -0.02 1.43 16 40 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.10 3.80 8.09 -2.39 -0.02 3.78 16 42 H 0.38 18.34 7.43 -74.06 -0.55 17.79 16 43 H 0.27 12.25 8.31 -92.70 -0.77 11.48 16 44 H 0.09 3.31 8.09 -2.39 -0.02 3.29 16 45 H 0.07 2.68 8.12 -2.39 -0.02 2.67 16 46 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.08 2.57 8.10 -2.39 -0.02 2.55 16 48 H 0.39 10.05 6.81 -92.71 -0.63 9.42 16 Total: -1.00 -65.35 380.42 -0.36 -65.71 By element: Atomic # 1 Polarization: 43.52 SS G_CDS: -0.21 Total: 43.31 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 4.90 Total: 22.08 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -4.97 Total: -89.50 kcal Atomic # 8 Polarization: -79.36 SS G_CDS: -2.10 Total: -81.46 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -65.35 -0.36 -65.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356559620.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.252 kcal (2) G-P(sol) polarization free energy of solvation -65.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds