Wall clock time and date at job start Fri Apr 10 2020 18:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00153 * 2 1 4 4 N 1.46498 * 109.46876 * 124.99759 * 3 2 1 5 5 C 1.46499 * 120.00459 * 269.99860 * 4 3 2 6 6 C 1.50694 * 109.47210 * 270.00579 * 5 4 3 7 7 H 1.08001 * 120.00386 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99937 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00253 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00375 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46940 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47235 * 120.00001 * 10 8 6 13 13 H 1.48499 * 109.47386 * 240.00216 * 10 8 6 14 14 C 1.34776 * 119.99885 * 90.00367 * 4 3 2 15 15 O 1.21283 * 120.00367 * 179.97438 * 14 4 3 16 16 C 1.50703 * 120.00193 * 359.97438 * 14 4 3 17 17 C 1.52999 * 109.47500 * 179.97438 * 16 14 4 18 18 C 1.50698 * 109.47009 * 180.02562 * 17 16 14 19 19 O 1.21274 * 120.00423 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99922 * 180.02562 * 18 17 16 21 21 C 1.46919 * 120.63144 * 179.97438 * 20 18 17 22 22 C 1.53195 * 108.89273 * 233.55709 * 21 20 18 23 23 C 1.53070 * 109.29524 * 305.57804 * 22 21 20 24 24 O 1.42902 * 109.44395 * 181.23525 * 23 22 21 25 25 C 1.53039 * 109.65812 * 61.15209 * 23 22 21 26 26 C 1.46928 * 120.62874 * 0.02562 * 20 18 17 27 27 H 1.08001 * 119.99985 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.99943 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99924 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46753 * 5.00190 * 3 2 1 31 31 H 1.08999 * 109.47424 * 244.99819 * 3 2 1 32 32 H 1.08999 * 109.46701 * 30.00326 * 5 4 3 33 33 H 1.09002 * 109.47262 * 150.00295 * 5 4 3 34 34 H 0.96995 * 120.00416 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47024 * 59.99785 * 16 14 4 36 36 H 1.08997 * 109.47328 * 300.00235 * 16 14 4 37 37 H 1.09001 * 109.46917 * 60.00014 * 17 16 14 38 38 H 1.08997 * 109.47262 * 300.00569 * 17 16 14 39 39 H 1.09002 * 109.58751 * 353.41659 * 21 20 18 40 40 H 1.08996 * 109.58750 * 113.69843 * 21 20 18 41 41 H 1.08997 * 109.50046 * 65.38734 * 22 21 20 42 42 H 1.09003 * 109.49733 * 185.48713 * 22 21 20 43 43 H 1.09007 * 109.35101 * 301.12962 * 23 22 21 44 44 H 0.96703 * 113.99581 * 59.80054 * 24 23 22 45 45 H 1.09002 * 109.49876 * 178.74890 * 25 23 22 46 46 H 1.09005 * 109.52615 * 58.67140 * 25 23 22 47 47 H 1.08998 * 109.58787 * 246.16207 * 26 20 18 48 48 H 1.09007 * 109.58600 * 6.44520 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5589 1.8649 2.4249 6 6 2.8442 3.3435 2.4804 7 1 3.3040 3.8369 1.6368 8 6 2.5184 4.0666 3.6083 9 7 1.9581 3.4660 4.6355 10 14 2.8728 5.8994 3.6775 11 1 3.5016 6.3305 2.4031 12 1 1.6025 6.6419 3.8782 13 1 3.7955 6.1829 4.8060 14 6 4.2496 0.8661 0.9824 15 8 5.0199 0.8886 1.9190 16 6 4.6969 0.3173 -0.3479 17 6 6.1535 -0.1402 -0.2473 18 6 6.6008 -0.6883 -1.5779 19 8 5.8305 -0.7114 -2.5143 20 7 7.8568 -1.1540 -1.7270 21 6 8.3074 -1.6920 -3.0177 22 6 8.8792 -3.0961 -2.7975 23 6 9.9683 -3.0360 -1.7236 24 8 10.5239 -4.3391 -1.5361 25 6 9.3652 -2.5444 -0.4057 26 6 8.8010 -1.1343 -0.6014 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4888 1.6966 2.5459 33 1 3.0989 1.3602 3.2260 34 1 1.7286 3.9747 5.4287 35 1 4.6120 1.0936 -1.1083 36 1 4.0678 -0.5297 -0.6217 37 1 6.2388 -0.9164 0.5131 38 1 6.7823 0.7070 0.0262 39 1 7.4640 -1.7448 -3.7061 40 1 9.0790 -1.0444 -3.4342 41 1 8.0840 -3.7654 -2.4694 42 1 9.3050 -3.4659 -3.7303 43 1 10.7525 -2.3493 -2.0425 44 1 10.9248 -4.7140 -2.3323 45 1 10.1380 -2.5238 0.3627 46 1 8.5644 -3.2170 -0.0983 47 1 9.6147 -0.4425 -0.8191 48 1 8.2837 -0.8167 0.3040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359405508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:06 Heat of formation + Delta-G solvation = -108.186147 kcal Electronic energy + Delta-G solvation = -27789.219903 eV Core-core repulsion = 23844.415439 eV Total energy + Delta-G solvation = -3944.804465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.52822 -39.12093 -38.28952 -36.05094 -35.66589 -33.35492 -32.82879 -32.03965 -31.70751 -31.37052 -27.90613 -26.07856 -25.30596 -24.56742 -23.53477 -22.28926 -21.10147 -19.89403 -19.12869 -18.41007 -17.80763 -17.32182 -16.52018 -16.25802 -16.00526 -15.63763 -15.45046 -15.04564 -14.90019 -14.69527 -14.45882 -14.13204 -13.92278 -13.62618 -13.34666 -13.12928 -12.79240 -12.56092 -12.39980 -12.21457 -11.99337 -11.85900 -11.72866 -11.65515 -11.58176 -11.24187 -11.11952 -10.91551 -10.86931 -10.85263 -10.58965 -10.29833 -10.18071 -9.84738 -9.60537 -9.12859 -8.96410 -8.89750 -8.42520 -7.66582 -6.03124 -4.07691 2.50790 2.52276 2.71446 3.30148 3.37066 3.40192 3.46067 3.72706 3.99621 4.25483 4.32613 4.44829 4.53810 4.65539 4.68602 4.85744 4.96127 5.08778 5.17274 5.18872 5.25468 5.26953 5.30989 5.37868 5.38821 5.43650 5.46528 5.58624 5.66669 5.68289 5.82903 5.85453 6.00742 6.06903 6.08436 6.24575 6.26937 6.85314 6.96275 7.11119 7.14078 7.20060 7.46761 7.57390 7.93574 8.03001 8.25199 8.43180 8.91355 9.09667 9.57319 11.05003 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015386 B = 0.002671 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.411276 B =10480.998808 C =11504.192962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.166 4.166 3 C 0.135 3.865 4 N -0.592 5.592 5 C 0.246 3.754 6 C -0.524 4.524 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.505 3.495 15 O -0.546 6.546 16 C -0.125 4.125 17 C -0.123 4.123 18 C 0.520 3.480 19 O -0.541 6.541 20 N -0.619 5.619 21 C 0.113 3.887 22 C -0.167 4.167 23 C 0.105 3.895 24 O -0.567 6.567 25 C -0.130 4.130 26 C 0.107 3.893 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.378 0.622 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.747 -12.900 -15.964 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.185 4.185 3 C 0.011 3.989 4 N -0.323 5.323 5 C 0.127 3.873 6 C -0.563 4.563 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.292 3.708 15 O -0.424 6.424 16 C -0.166 4.166 17 C -0.163 4.163 18 C 0.309 3.691 19 O -0.417 6.417 20 N -0.354 5.354 21 C -0.010 4.010 22 C -0.205 4.205 23 C 0.046 3.954 24 O -0.373 6.373 25 C -0.168 4.168 26 C -0.016 4.016 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.225 0.775 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.429 -12.729 -15.151 23.368 hybrid contribution 0.342 0.851 -0.471 1.031 sum 12.770 -11.878 -15.622 23.414 Atomic orbital electron populations 1.23800 0.95845 1.01701 1.00875 1.23418 0.96380 0.99066 0.99623 1.20607 0.93160 0.95280 0.89859 1.48209 1.10536 1.59961 1.13587 1.19279 0.95419 0.93756 0.78831 1.21475 1.40288 0.93346 1.01208 0.92415 1.24940 0.95116 0.98725 0.95372 1.69947 1.42168 1.36046 1.05217 0.86456 0.77905 0.85037 0.78099 1.19802 1.21000 1.20900 1.20318 0.82413 0.78539 0.89501 1.90655 1.52596 1.56923 1.42223 1.21442 0.95479 1.02689 0.96959 1.21423 0.97735 1.03111 0.94079 1.20931 0.80641 0.76691 0.90811 1.90677 1.52628 1.56023 1.42411 1.48163 1.12382 1.62791 1.12019 1.21480 1.00371 0.93105 0.86014 1.22673 1.00018 0.98131 0.99704 1.21794 0.93764 0.84445 0.95374 1.86540 1.78447 1.32710 1.39577 1.21884 1.01498 0.96541 0.96869 1.21790 0.93117 0.96406 0.90316 0.88834 0.88314 0.87800 0.89499 0.90489 0.94991 0.93882 0.92805 0.88794 0.88951 0.88072 0.87936 0.88570 0.91485 0.90573 0.90494 0.92519 0.77531 0.89635 0.90474 0.90841 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 14.32 29.02 0.42 -2.10 16 2 C -0.17 -2.48 9.74 -36.03 -0.35 -2.83 16 3 C 0.13 2.27 5.65 -5.20 -0.03 2.24 16 4 N -0.59 -12.59 2.44 -176.44 -0.43 -13.02 16 5 C 0.25 6.46 5.16 -5.20 -0.03 6.44 16 6 C -0.52 -14.86 9.39 -34.44 -0.32 -15.18 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 10 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.51 10.31 7.67 -10.98 -0.08 10.22 16 15 O -0.55 -13.12 15.56 5.55 0.09 -13.03 16 16 C -0.13 -1.92 3.54 -27.88 -0.10 -2.02 16 17 C -0.12 -1.64 3.34 -27.88 -0.09 -1.73 16 18 C 0.52 6.70 7.70 -10.98 -0.08 6.62 16 19 O -0.54 -8.53 15.39 5.56 0.09 -8.44 16 20 N -0.62 -6.19 2.98 -172.80 -0.51 -6.71 16 21 C 0.11 0.95 6.43 -3.71 -0.02 0.92 16 22 C -0.17 -1.14 5.71 -26.59 -0.15 -1.29 16 23 C 0.11 0.72 3.43 -26.67 -0.09 0.63 16 24 O -0.57 -4.28 13.32 -35.23 -0.47 -4.75 16 25 C -0.13 -1.00 5.73 -26.64 -0.15 -1.15 16 26 C 0.11 0.84 6.34 -3.74 -0.02 0.82 16 27 H 0.09 1.11 8.06 -52.49 -0.42 0.68 16 28 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 29 H 0.10 1.48 7.83 -52.48 -0.41 1.07 16 30 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 31 H 0.08 1.13 6.44 -51.93 -0.33 0.79 16 32 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.09 1.40 7.36 -51.93 -0.38 1.02 16 36 H 0.09 1.33 7.73 -51.93 -0.40 0.93 16 37 H 0.10 1.30 7.65 -51.93 -0.40 0.90 16 38 H 0.10 1.35 7.90 -51.93 -0.41 0.93 16 39 H 0.10 0.95 7.00 -51.93 -0.36 0.59 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 1.25 9.08 45.56 0.41 1.66 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.10 0.82 5.93 -51.92 -0.31 0.51 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -35.61 392.59 -7.96 -43.58 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.14 Total: 2.31 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.22 Total: 3.22 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.21 Total: -45.65 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.30 Total: -26.22 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.61 -7.96 -43.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359405508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.609 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds